Sarcophilus harrisii (Tasmanian devil): 100917699
Help
Entry
100917699 CDS
T02286
Symbol
COL11A1
Name
(RefSeq) collagen alpha-1(XI) chain isoform X1
KO
K19721
collagen type V/XI/XXIV/XXVII, alpha
Organism
shr
Sarcophilus harrisii (Tasmanian devil)
Pathway
shr04820
Cytoskeleton in muscle cells
shr04974
Protein digestion and absorption
Brite
KEGG Orthology (KO) [BR:
shr00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
100917699 (COL11A1)
09150 Organismal Systems
09154 Digestive system
04974 Protein digestion and absorption
100917699 (COL11A1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
shr00536
]
100917699 (COL11A1)
Glycosaminoglycan binding proteins [BR:
shr00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
100917699 (COL11A1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
COLFI
Laminin_G_2
Laminin_G_3
Laminin_G_1
Motif
Other DBs
NCBI-GeneID:
100917699
NCBI-ProteinID:
XP_031823033
UniProt:
G3VW44
LinkDB
All DBs
Position
4:complement(403890585..404147001)
Genome browser
AA seq
1807 aa
AA seq
DB search
MERWSTRWKTKRWLWDSTITIFVVIAFIFQAAEVRGATPVDVLKALDFHNSPEGISKTAG
FCTNRRNSKGSDTAYKVTKQAQISAPTKQLYPGGTFPQDFSILFTVKPKKGIQSFLLSIY
NEQGIQQIGVEIGRSPVFLYEDQHGKPAPEDYPLFRTVNIADGKWHRIAISVEKKTVTMI
VDCKKKTTKPLQRSDKAVVDTNGITVFGTRILDEEVFEGDIQQLLITADPKAAYDYCEHY
SPDCDSPSPNAAQAQEPHIEEYAPEDIIEYDYEYGEAEYKEAESVTEGPTLIEETIAQTE
ANVVDDFQEYNYGTSESYQTENPRRVSGPNEQDPVEEVFTEEYITGEDYDSQRKNVEDNQ
YESKGVDGRDSDLLVDGDLGEYDFYEYKEYEDKPTNPTNEEFGPGVPAETDITETSIHGH
GAYGEKGQKGEPAVVEPGMLIEGPPGPAGPAGLMGPPGLQGPTGPPGDPGERGPAGRPGL
PGADGLPGPPGTMLMLPFRYGGDGSKGPTISAQEAQAQAILQQARIALRGPPGPMGLTGR
PGPVGGPGSAGAKGEGGEPGPQGPRGIQGPPGPTGKAGKRGRPGADGGRGMPGEPGAKGD
RGFDGLPGLPGDKGHRGERGPQGPPGSPGEDGMRGEDGEIGPRGLPGEAGPRGLLGPRGT
PGPPGQPGIAGVDGPPGPKGNMGPQGEPGPPGQQGIPGPQGLPGPQGPIGPPGEKGPQGK
PGLAGLAGADGPPGHPGKEGQSGEKGALGPPGPQGPIGYPGPRGVKGADGVRGLKGSKGE
KGEDGFPGFKGDMGLKGDRGEVGQVGPRGEDGPEGPKGRAGPTGDPGGPGQAGEKGKLGV
PGLPGYPGRQGPKGSTGFPGFPGANGEKGARGVAGKPGPRGQRGPTGPRGSRGARGPTGK
PGPKGTSGSDGPPGPPGERGPQGPQGPVGFPGPKGPPGPPGKDGLPGHPGQRGETGFQGK
TGPPGPGGVVGPQGPTGETGPIGERGHPGPPGPPGEQGLPGAAGKEGAKGDPGPQGISGK
DGPAGLRGFPGERGLPGAQGAPGLKGGEGPQGPPGPLGSPGERGSAGTAGPIGLPGRPGP
QGPPGPAGEKGAPGEKGPQGPAGRDGVQGPVGLPGPAGPAGSPGEDGDKGEIGEPGQKGS
KGDKGENGPPGPPGLQGPVGAPGIAGGDGEPGPRGQQGMFGQKGDEGARGFPGPPGPIGL
QGLPGPPGEKGENGDVGPMGPPGPPGPRGPQGPNGADGPQGPSGSVGSVGGVGEKGEPGE
AGNPGPPGESGPGGPKGERGEKGEAGPPGAAGPPGIKGPPGDDGPKGNPGPVGFPGDPGP
PGEPGPAGQDGVGGDKGEDGDAGQPGPPGPSGEAGPPGPPGKRGPPGAAGSEGRQGEKGA
KGEAGSEGAPGKTGPVGPQGPAGKPGPEGLRGIPGPVGEQGLPGAAGQDGPPGPLGPPGL
PGLKGDPGSKGEKGHPGLIGLIGPPGEQGEKGDRGLPGTQGTPGAKGDGGIPGPAGPVGP
PGPPGLPGPQGPKGNKGSSGPTGQKGDSGLPGPPGPPGPPGEVIQPLPILSPKKTRRHAE
GMQADAGDNILDYSDGMEEIFGSLNSLKQDIERMKYPMGTQNNPSRTCKDLQLSHPDFPD
GEYWIDPNQGCSGDSFKVYCNFTAGGETCIYPDKKSEGVRISSWPKEKPGSWFSEFKRGK
LLSYLDIEGNSINMVQMTFLKLLSASARQNFTYNCHQSVAWYDVTSDSHDKALRFLGSND
EEMSYDNNPYIKALYDGCSSRKGFGKSVIEINTPKIDQVPIVDVMINDFGDQNQKFGFEV
GPVCFLG
NT seq
5424 nt
NT seq
+upstream
nt +downstream
nt
atggagcgttggtccacaaggtggaaaacgaaaaggtggctttgggattccacgataacc
atcttcgtcgtaatagctttcatcttccaagctgcagaggtcagaggagcgaccccagtt
gatgtattaaaagcattagactttcataattcaccagagggaatatcaaaaacagcagga
ttctgcacaaacagaagaaattcaaaaggttcagatactgcttataaagttacaaaacaa
gcacagatcagtgcccccacaaaacagctatatccaggtggtacatttcctcaagatttt
tcaatactatttacagtaaagcccaaaaagggaatccagtccttccttttatccatctac
aatgagcagggtattcagcaaattggtgttgagattggaaggtcccctgtctttctctat
gaagatcagcatggaaaacctgcccctgaagactatcctcttttcagaactgtcaacatt
gctgatgggaagtggcatcgaattgctatcagtgtggagaaaaaaactgtgactatgatt
gttgactgcaagaagaaaacaactaaaccactccagagaagtgacaaagcagttgttgac
accaatgggataacagtttttggaacaaggattctggatgaagaagtttttgagggtgat
atccagcaactgttaattacagctgaccctaaagcagcttatgactactgtgagcattat
agcccagactgtgactcccctagcccaaatgctgctcaggctcaggaaccacatatcgag
gagtatgcacctgaagatattatcgaatatgactatgagtatggggaagcagagtataaa
gaggctgaaagtgtaacagagggacccacactaattgaggaaaccatagcacaaactgag
gcaaatgttgttgatgattttcaagaatacaactatggaacatctgaaagctaccagact
gaaaatcctaggcgggtatctggaccaaatgagcaagatccagttgaagaagtatttact
gaagaatacataactggagaggattatgattcccagagaaaaaatgtcgaggataaccag
tatgaaagcaaaggagtagacggcagggattctgatcttctggtagatggagatttagga
gaatatgatttttatgaatataaggaatatgaagataaacccaccaatcccactaatgaa
gaatttggtccaggtgtaccagctgaaactgatattacagaaacaagcatacatggccat
ggtgcctatggggaaaaggggcagaaaggagaaccagctgtggttgaacctggaatgctt
attgaagggccaccaggacctgctggacctgctggtctcatgggtcctcctggtctgcaa
ggccccactggacctcctggtgatcctggtgaaaggggcccagctggacgtcctggttta
ccaggggctgatggtttacctggccctcctggtaccatgttaatgttaccatttcgctat
ggtggagatggttctaaaggaccaactatatctgctcaagaagctcaggctcaagctatt
cttcagcaagctcggattgctctcagaggtccacctggcccaatgggtctaactggaaga
ccgggtcctgtgggtggccctggttcagcaggagccaaaggagaaggaggtgaaccaggt
cctcagggtcctcgtggcattcaaggtcctcctggtccaactggcaaagctggaaaaagg
ggtcgtccaggcgctgatggaggaagaggaatgccaggagaacctggggcaaagggtgac
agaggatttgatggacttcctggtctacctggtgacaaaggccatagaggagaacgtggt
ccccaaggtcctcctggttctcctggtgaagatggaatgagaggagaagatggagaaatt
ggaccgagaggtcttccaggtgaagctggtccacgaggtctgttgggacccagaggaaca
cctggtcccccaggacaacctggtattgcaggtgtggatggcccacctggtccaaaagga
aatatgggtcctcaaggggaacctgggcctccaggtcaacaaggaattccaggtccacaa
ggccttcctggtccccaaggtccaattggccctcctggtgaaaaaggcccacaaggaaaa
cctggtcttgctggacttgctggtgctgatgggcctcctggtcatcctggcaaagaaggt
caatctggagaaaaaggtgctctgggccctcctggaccacagggtcctattggttatcct
ggtccccgtggtgtgaaaggtgctgatggtgtaagaggtctcaagggctctaaaggtgaa
aagggtgaagatggtttccctggatttaaaggtgacatgggtcttaaaggtgacagagga
gaagttggacaagtgggtccaagaggagaagatggcccagaaggtcccaaaggtagagca
ggtccaactggagaccctggtggtcctggtcaagctggggagaagggaaaacttggagtt
ccaggtttaccaggatacccaggaagacaaggtccaaagggttccactggttttccaggg
ttcccaggtgccaatggagaaaaaggtgccaggggtgtagctggcaaaccaggcccccgg
ggacaacgcggtccaacggggccacgaggttcgagaggtgcaaggggtcccacaggaaaa
ccaggcccaaagggtacttcagggagtgatggtccacctggtcctcctggtgagagagga
cctcaaggacctcagggccctgttggatttcctggaccaaaagggccccctgggccacct
ggaaaagatggacttcctgggcacccaggacaacgtggagaaactggatttcaaggcaaa
acaggtcctccaggaccaggaggcgttgttggaccacagggtcctactggtgagactggt
ccaataggtgaacgaggtcatcctggacctcctggacctcctggtgagcaaggacttcct
ggtgcagctggaaaagagggtgcaaagggtgatcctggtcctcaaggtatctcagggaaa
gatggaccagcaggacttcgtggtttcccaggagaaagaggccttcctggagcgcagggt
gcacctggactgaaaggtggagaaggtccccagggtccacctggtccacttggatcacca
ggagaacgaggttctgcaggtacagctggcccaattggtttacctggtcgcccagggccc
caaggtccccctggtccagcaggagaaaaaggtgctcctggagaaaaaggtccccaaggt
ccagctggacgtgatggtgtgcagggtcctgtaggtcttccaggtccagctggccctgca
ggctcccctggagaagatggagataaaggtgaaattggtgaacctggacaaaaaggaagt
aaaggtgacaaaggagaaaatggtcctcctggacccccaggccttcaaggacctgttggt
gcccctggaattgctggaggtgatggggaacctggaccaagaggtcagcaggggatgttt
ggccaaaaaggtgatgaaggtgccagaggatttcctggtcctccaggtcccattggcctt
cagggccttcctggtccccctggagaaaaaggtgaaaatggtgatgttggtccaatgggt
ccacctggtcctccaggcccaagaggtcctcagggtcccaatggtgcagatggtccacaa
ggcccctcaggctcagttggctcagttggtggtgttggtgaaaagggtgaacctggagaa
gcaggaaatcctggcccccctggtgaatctggtcctggtggtccaaaaggtgaacgagga
gaaaaaggtgaagcagggcctcctggtgctgcaggacctccaggaatcaaaggaccccca
ggagatgacggacctaaaggcaacccaggtcctgttggcttccctggagatcctggtcct
cctggtgaaccaggacctgctggtcaagatggtgttggtggtgataagggtgaagatgga
gatgctggtcagcctggtcctcctggtccttctggtgaagctgggccccctggacctcct
ggaaaaagaggccctcctggagctgctgggtcagaaggaagacaaggcgaaaaaggtgct
aagggagaagcaggatcagaaggtgcccctggcaaaactggtcctgttggccctcaagga
ccagcaggaaaacctggcccagaaggtcttcgtggcattcctggtcctgtcggagaacaa
gggttacctggagctgcaggccaagatggtccacctggtcctttaggtccccctggctta
ccgggactgaaaggtgaccctggttctaaaggggagaagggacatcctggtttgattggt
ctgattggtcctccaggagagcaaggtgaaaaaggcgacaggggacttccaggaacacaa
ggaactccaggagccaagggtgatggtgggatccctggtccagctggtcctgttggcccc
cctggtcctccaggcttgccaggtcctcaaggtccaaaaggcaacaaaggttcttctggt
cctactggtcaaaaaggtgacagcggtcttcctgggcctcctgggcctccaggccctcct
ggtgaagtcatccagcctttaccaattttgtcacccaaaaagaccagacggcatgctgaa
ggtatgcaagctgatgcaggagataatatccttgattactctgatggcatggaagaaatc
tttggttctctcaactctctgaaacaagatatcgagcggatgaaatatcccatgggcaca
cagaacaatccatcccgaacttgcaaagatctgcagctctcccatccagacttcccagat
ggtgagtattggattgatccaaaccaaggctgttctggagattcctttaaagtttactgt
aacttcacagctggtggagaaacttgcatttaccctgacaagaaatctgaaggagtaaga
atttcatcatggccaaaggagaagccaggaagctggtttagtgaatttaagagaggaaaa
ctgctctcttacttggatatagaagggaattccattaatatggttcaaatgacattcctt
aaacttctgagtgcttcagccaggcaaaatttcacctacaattgtcatcaatcagtggct
tggtatgatgtaacatctgacagtcatgacaaagcactccgattcttgggatcaaatgat
gaggagatgtcttacgacaacaacccttacatcaaggctctttatgatggctgttcttca
cgaaaaggctttggaaagagtgtgattgaaatcaatacccctaagatagaccaagtacct
attgttgatgtgatgattaatgactttggagatcagaatcagaagttcggattcgaagtt
ggcccagtttgtttccttggttaa
DBGET
integrated database retrieval system
