Sarcophilus harrisii (Tasmanian devil): 100917842
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Entry
100917842 CDS
T02286
Name
(RefSeq) sodium channel protein type 1 subunit alpha isoform X1
KO
K04833
voltage-gated sodium channel type I alpha
Organism
shr
Sarcophilus harrisii (Tasmanian devil)
Pathway
shr04728
Dopaminergic synapse
Brite
KEGG Orthology (KO) [BR:
shr00001
]
09150 Organismal Systems
09156 Nervous system
04728 Dopaminergic synapse
100917842
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
shr04040
]
100917842
Ion channels [BR:
shr04040
]
Voltage-gated cation channels
Sodium channel, voltage-gated (Nav)
100917842
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ion_trans
Na_trans_cytopl
Na_trans_assoc
IQ_SCN5A_C
PKD_channel
ATP-synt_B
GPHH
IQ
Lustrin_cystein
FUT8_N_cat
PFF1_TM
Motif
Other DBs
NCBI-GeneID:
100917842
NCBI-ProteinID:
XP_031816398
Ensembl:
ENSSHAG00000012609
LinkDB
All DBs
Position
3:407971099..408179449
Genome browser
AA seq
2004 aa
AA seq
DB search
MEQTVLVPPGPDSFNYFTRESLAAIEQRIAEEKAKNPKPDKKDDDENGPKPNSDLEAGKS
LPFIYGDIPPGMVSEPLEDLDPYYINKKTFIVLNKGKAIFRFSATSALYILTPFNPLRKI
AIKILVHSLFSMLIMCTILTNCVFMTMSNPPDWTKNVEYTFTGIYTFESLIKIIARGFCL
EDFTFLRDPWNWLDFTVITFAYVTEFVDLGNVSALRTFRVLRALKTISVIPGLKTIVGAL
IQSVKKLSDVMILTVFCLSVFALIGLQLFMGNLRNKCVQWPPANSSYEEHSIEKNITMDY
NGTLVNETIFEFDWKSYIEDEKYFYYLEGYMDALLCGNSSDAGQCPEGYMCVKTGRNPNY
GYTSFDTFSWAFLSLFRLMTQDFWENLYQLTLRAAGKTYMIFFVLVIFLGSFYLINLILA
VVAMAYEEQNQATLEEAEQKEAEFQQMLEQLKKQQEAAQAAAATASEHSREPSAAGGLSE
SSSEASKLSSKSAKERRNRRKKRKQKEQSGGEEKDEDEFHKSESEESIRRKGFRFSIEGN
RLTYEKRYSSPHQSLLSIRGSLFSPRRNSRTSLFSFRGRAKDVGSENDFADDEHSTFEDN
ESRRDSLFVPRRHGERRNSNISQASRSSRMLAVFPVNGKMHSTVDCNGVVSLVGGPSAPT
SPVGQLLPEVIIDKPATDDNGTTTETEIKKRRSSSFHVSMDFLEDPIQRQRAMSIASILT
NTVEELEESRQKCPPCWYKFSNIFLIWDCSPHWLKVKHIVNLIVMDPFVDLAITICIVLN
TLFMAMEHYPMTPHFNNVLSVGNLVFTGIFTGEMFLKIIAMDPYYYFQEGWNIFDGFIVT
LSLVELGLANVEGLSVLRSFRLLRVFKLAKSWPTLNMLIKIIGNSVGALGNLTLVLAIIV
FIFAVVGMQLFGKSYKDCVCKIAPNCELPRWHMHDFFHSFLIVFRVLCGEWIETMWDCME
VAGQAMCLTVFMMVMVIGNLVVLNLFLALLLSSFSADNLAATDDDNEMNNLQIAVDRMHR
GIAYVKRKIYEFIQQAFVRKQKVLDEIKPLDDLNNKKDSCMSNHTTEAGKDLDYLKDANG
TTSGIGTGSSVEKYIIDESDYMSFINNPSLTVTVPIAVGESDFENLNTEDFSSESDLEES
KEKLNESSSSSEGSTVDIGLPEEEQPVAEPEEALEPEACFTEGCVRRFKCCQVSVEEGRG
KQWWNLRKTCFRIVEHNWFETFIVFMILLSSGALAFEDIYIEQRKTIKIMLEYADKVFTY
IFILEMLLKWVAYGYQTYFTNAWCWLDFLIVDVSLVSLTANALGYSELGAIKSLRTLRAL
RPLRALSRFEGMRVVVNALLGAIPSIMNVLLVCLIFWLIFSIMGVNLFAGKFYHCVNTTT
GDMFDISQVYNRSQCFELIERNETARWKNVKVNFDNVGFGYLSLLQVATFKGWMDIMYAA
IDSRNVELQPKYEDNLYMYLYFVIFIIFGSFFTLNLFIGVIIDNFNQQKKKFGGQDIFMT
EEQKKYYNAMKKLGSKKPQKPIPRPGNKFQGMVFDFVTRQVFDISIMILICLNMVTMMVE
TDDQSEEMTSILSRINLVFIVLFTGECVLKMISLRHYYFTIGWNIFDFVVVILSIVGMFL
AELIEKYFVSPTLFRVIRLARIGRILRLIKGAKGIRTLLFALMMSLPALFNIGLLLFLVM
FIYAIFGMSNFAYVKREVGIDDMFNFETFGNSMICLFQITTSAGWDGLLAPILNSGPPDC
DPQKVHPGSSVKGDCGNPSVGIFFFVSYIIISFLVVVNMYIAVILENFSVATEESAEPLS
EDDFEMFYEVWEKFDPDATQFMEFEKLSQFAAALDPPLNLPQPNKIQLIAMDLPMVSGDR
IHCLDILFAFTKRVLGESGEMDALRIQMEERFMASNPSKASYEPITTTLKRKQEEVSAVI
IQRAYRRHLLKRTVKQASFTYNKNKLKGGANLLVKDDILIENSITEKTDLTMSTAACPPS
YDRVTKPILEKHEREDKDDKAKGK
NT seq
6015 nt
NT seq
+upstream
nt +downstream
nt
atggagcaaacagtgcttgtaccaccaggacctgacagcttcaactacttcaccagagaa
tctcttgcagctattgaacaacgcattgcagaagagaaagctaagaatccaaaaccagac
aagaaagatgacgatgaaaatggcccaaagccaaatagtgacttggaagctggaaagtcc
cttccatttatttatggagacattccacctggaatggtgtctgagcccttggaggacctg
gacccatattatatcaataaaaaaacttttatagtattgaataaagggaaggcaatcttc
cgattcagtgccacttctgccctgtacattttaactcccttcaatcctcttaggaaaata
gctattaagattttggtacattcattattcagcatgctaattatgtgcactattttgaca
aactgcgtgtttatgacaatgagtaatcctcccgactggacgaagaatgtagagtacact
ttcacaggaatatatacatttgaatcacttataaaaatcattgcaagaggtttctgttta
gaagatttcacttttcttcgagatccatggaattggcttgatttcactgtcattacattt
gcatatgtgacagagtttgtggacctgggcaatgtctcagcgttgagaacattcagagtt
ctccgagcattgaaaacaatttcagtcattccaggcttgaagactattgtaggggctctg
atccagtcagtgaagaaactttctgatgtcatgatcctgactgtgttttgtctaagtgta
tttgctcttattggactacagttgttcatgggtaacctgaggaataaatgtgtgcaatgg
cctcctgccaattcctcttatgaagaacacagtattgaaaagaatattactatggattac
aatggcacccttgtaaatgaaaccatctttgagtttgactggaaatcttacattgaagat
gaaaaatatttttattatctggaaggatatatggatgcactcctctgtggtaacagctca
gatgccggccagtgtccagaaggatatatgtgtgtgaaaactggccgaaatcctaattat
ggctatacaagctttgataccttcagctgggctttcttgtccctgtttcgattgatgact
caggacttctgggaaaacctttaccaactgacactacgtgcagctggcaagacatacatg
atattttttgtcctggtcattttcttgggctctttctatcttataaatctgattctggct
gtggttgccatggcctatgaggagcagaatcaggctaccttggaagaggcagagcaaaag
gaggctgagtttcaacagatgctggaacagcttaagaagcaacaggaagcagctcaggca
gcagcagccactgcctctgaacattccagagaacccagtgcagcaggtggactctcagag
agctcgtcagaagcctcaaaactgagttcaaaaagtgcaaaggaaagaaggaataggcga
aagaaaagaaaacagaaagaacagtcaggtggagaagagaaagatgaggatgaattccac
aaatctgaatctgaagagagtattaggaggaaaggcttccggttttccattgaagggaat
cgattgacctatgagaagaggtactcctccccgcaccagtccttgttgagcattcgtggc
tccctgttttctccaaggcgcaacagcagaacaagccttttcagctttagagggcgagca
aaggatgtgggatctgagaatgattttgctgatgatgaacacagcacattcgaggacaat
gaaagcaggagagattccctctttgtccctcgtcgccatggagaacgacgcaacagtaac
ataagtcaggccagtagatcatcccggatgctggcggtgtttccagtgaatgggaagatg
cacagcactgtagattgcaatggtgtggtttccttggttggtggaccttcagctcctaca
tcgcctgttggacagcttctgccagaggtgataatagataagccagctactgatgacaat
ggcacaactactgaaacagaaatcaaaaagagaaggtcaagttctttccatgtttccatg
gattttctagaagatcctatccaaaggcaaagagcaatgagtatagccagtatattaacc
aatactgtggaagaacttgaagaatccagacaaaagtgtccaccttgctggtataaattt
tccaacattttcttaatctgggactgttccccacactggttgaaagtgaaacacattgtc
aatctaattgtgatggatccatttgttgatctggcaattaccatctgtattgtcttaaat
actctgttcatggccatggaacattatccaatgactcctcatttcaataatgtactttca
gtaggaaacttggtctttactgggatctttacaggagaaatgtttctgaagataattgcc
atggacccctactattattttcaagagggctggaatatatttgatggttttattgtaact
cttagcttagtagaacttggattggccaatgtggaaggattgtccgttctccgttctttc
agactgctccgagttttcaagttggcaaaatcttggccaacattaaatatgctgataaaa
atcattggcaactcagtaggagctctgggaaacttgacattggtgttggccattattgtt
ttcatttttgctgtggttggcatgcagctctttggtaaaagctacaaagactgtgtctgc
aagatcgcccctaactgtgaacttccacgctggcacatgcatgacttcttccattccttc
ctgattgtgttccgggtgctgtgtggagaatggatagagaccatgtgggattgtatggag
gttgctggccaagccatgtgtcttactgttttcatgatggtcatggtgattggaaacctt
gtggtattgaatctgtttctggccttactcctgagttcatttagtgcagacaaccttgct
gctacagatgatgataatgaaatgaacaatctccagattgctgtggatcgaatgcatcga
ggcatagcttatgtgaaaaggaaaatatatgaattcattcaacaggcctttgtcagaaaa
cagaaggttttagatgaaatcaaaccacttgatgatctgaataacaagaaagatagctgc
atgtccaatcacacaacagaagcaggaaaagatcttgattatctgaaagatgccaatggg
actacaagtggaatagggacaggcagcagtgtggaaaaatacataattgatgaaagtgat
tacatgtcattcataaataaccccagcctcacagtaacagtaccaattgctgttggagaa
tctgactttgaaaatttaaacacagaagacttcagcagtgaatcagatctggaagaaagc
aaagaaaaacttaatgagagcagcagttcatctgaaggcagtactgtagacattgggctt
cctgaagaggaacagcctgtagcagaacctgaagaagcccttgaacctgaagcctgtttc
actgaaggttgtgtacgaaggttcaaatgctgtcaagtcagtgtggaagaaggtagagga
aaacagtggtggaacctgagaaaaacctgtttcaggatagttgaacacaactggtttgag
actttcattgttttcatgattcttctcagtagtggtgctctggcatttgaagacatttat
attgaacagcgaaagactattaaaatcatgttggaatatgctgataaagttttcacttac
atcttcattctagaaatgcttctaaagtgggtggcatatggttatcaaacttatttcact
aatgcctggtgttggttagacttcttaattgttgatgtctctttggttagtttaacagcg
aatgccttgggctactcagaacttggtgccattaaatccctcagaacactaagagctctg
agacctcttagagccctatcaagatttgagggaatgagggtggttgtgaatgccctctta
ggagccattccctccatcatgaatgtgcttctggtttgtcttatattctggctaattttc
agcatcatgggagtaaatctgtttgctggcaagttctaccactgtgttaataccacaact
ggtgatatgtttgacatctcacaagtctataatcgttctcagtgtttcgaacttatagaa
agaaatgagactgcccggtggaaaaatgttaaagtaaactttgataatgtaggattcgga
tatctctctttacttcaagtagctacatttaaaggatggatggatattatgtatgcagct
attgactcaagaaatgtggaactacaacccaaatatgaagacaacctttacatgtatctt
tactttgttattttcatcatctttgggtcattcttcaccttgaatctgttcattggtgtc
atcattgataatttcaatcagcaaaaaaagaagtttggaggccaagatatcttcatgaca
gaggaacagaaaaaatactacaatgcaatgaaaaaattggggtccaagaaaccacaaaaa
ccaataccacgtccagggaacaaattccagggaatggtttttgattttgtaaccagacaa
gtctttgatatcagtatcatgattctcatctgcctcaatatggtcaccatgatggtggag
actgatgatcagagtgaagaaatgactagcattctatcccggattaatttggtgttcatt
gtcctcttcactggagaatgtgtgctgaagatgatctcccttcgccattactacttcacc
ataggatggaacatatttgattttgtggtagttattctctccattgtaggtatgtttctg
gcagagctgatagaaaaatatttcgtgtcccctaccctgtttcgagtgatccgtctcgcc
aggattggacgaatcctccgtcttatcaaaggagcaaagggaatcagaacacttctcttt
gctttgatgatgtccctccctgctctgtttaacattggcctcctactcttcctggttatg
tttatttatgctatttttggaatgtctaattttgcctatgtcaagagggaagttggaatt
gatgatatgttcaactttgaaacctttggcaacagcatgatctgtctcttccaaattacc
acatctgctggttgggatggtttgcttgcacccattcttaacagcggaccaccagattgt
gatcctcaaaaagtacaccctggaagttcagtcaaaggagattgtggcaacccctcagtt
gggattttcttttttgtcagttatattattatctcatttctggtagttgtaaatatgtac
attgctgttattctagaaaatttcagtgttgctactgaagaaagtgctgagcccctgagt
gaagatgactttgagatgttctatgaggtttgggagaagtttgatcctgatgccactcaa
ttcatggaatttgaaaaactttctcaatttgcagcagctctggatccacctctcaattta
ccacagccaaacaaaattcagcttattgccatggatctgcccatggtgagtggggatcga
attcactgccttgacatcctatttgcttttacaaagcgtgttttgggagagagtggagag
atggatgctctcagaatacagatggaagagagattcatggcatctaatccttccaaagcc
tcttatgagccaattaccacaacactaaaaagaaaacaagaggaagtatctgctgttatc
attcaacgggcttacagacgtcatcttttaaagcgaacggtaaaacaagcctcatttact
tataacaaaaataaactcaaaggtggggcaaaccttctggttaaagacgacattcttatt
gaaaactctatcacagaaaaaacagatctgaccatgtccacagcggcttgtccaccttcc
tatgatcgagtaacaaagccaatcctagagaaacatgaaagagaagacaaagatgacaag
gccaagggaaagtga
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