Sarcophilus harrisii (Tasmanian devil): 100917870
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Entry
100917870 CDS
T02286
Symbol
COL18A1
Name
(RefSeq) collagen alpha-1(XVIII) chain isoform X1
KO
K06823
collagen type XVIII alpha
Organism
shr
Sarcophilus harrisii (Tasmanian devil)
Pathway
shr04974
Protein digestion and absorption
Brite
KEGG Orthology (KO) [BR:
shr00001
]
09150 Organismal Systems
09154 Digestive system
04974 Protein digestion and absorption
100917870 (COL18A1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
shr04147
]
100917870 (COL18A1)
00535 Proteoglycans [BR:
shr00535
]
100917870 (COL18A1)
00536 Glycosaminoglycan binding proteins [BR:
shr00536
]
100917870 (COL18A1)
Exosome [BR:
shr04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
100917870 (COL18A1)
Proteoglycans [BR:
shr00535
]
Extracellular matrix (ECM) proteoglycans
Basement membrane proteoglycans
100917870 (COL18A1)
Glycosaminoglycan binding proteins [BR:
shr00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
100917870 (COL18A1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Endostatin
Collagen
Collagen_trimer
DUF959
Laminin_G_3
Motif
Other DBs
NCBI-GeneID:
100917870
NCBI-ProteinID:
XP_031824186
LinkDB
All DBs
Position
4:complement(463784852..463866075)
Genome browser
AA seq
1523 aa
AA seq
DB search
MAPLPSAVALLFLLAAHWPGAGAQFFNWWGLKATEAPPGTLPATSAPQGGPAPSAGPAAP
SAGPAAASSAPGAIPEELTEPGSPAPANASAAPTPSRAPPGRADLKEENLAGVGAKILNV
AQGIRSLVQFWNESSEAERSAEGEAAAGAPATLPTLPSAGAGAEPSAPGSVSTQAAGEAS
PPDAPRPTSSSAPPPGSGAPELAPGQPSAPPPGKNVSAEVSLAQLLGQPPPQHVSQVYDP
DSGPAYVFGPDASGGQVARYHVPSPFYRDFSLLFHVKPTSARAGVLLALTDAAQAVISVG
VKLSAPRGGKQDVLFFYTEPGASETRTAASFSLPSFVNQWTRFALSVDGDEVALYVNCKE
IQRLPLARSAQELELEPGAGLFVAQAGGADPDKFQGVISELKLRGDPRVTLLQCLDDDDE
DSDGASGDFGSGEYEQGGASGSHMGGQRENPRRLSSQGAPLLPRLPEAPPVTLPPLDRIP
TSSQPSLVEAGASSGAQLAPSGEEGAQGSGRPEGAQDQDGRGAEEGPRYETPGLKGQKGE
PGARGPPGPVGPQGPAGPTLHNPDGSTAQQVPGPQGPPGKDGEPGDPGEDGKPGEMGPQG
FPGTPGDVGPKGEKGDPGIGPMGPPGPPGPPGPPGPAFRPDKLTFIDMEGSGFGGDLESI
RGPRGFPGPPGPPGVPGLPGEPGRFGMNSTGGPAPPGLPGVPGRDGSPGSRGPPGPAGLP
GKDGQQGPQGPKGDRGDVGSPGLKGSKGEAGPVGAPGETGLAGLPGPMGPRGLPGPPGPP
GPGWRAGFDDMEGSGGPFWSAGPGTRGAAGPQGLPGFPGLKGDQGVAGLPGEKGDPGLPG
LRGREGEPGAQGPKGDAGSPGQKGEPGKDGVGQPGPPGPPGPPGELTYVSEDRRTLAGVA
GREGRPGYAGFPGPAGPKGDNGLPGFPGAKGEKGEPGRVLTMAEKGDKGEQGHRGPPGPY
GRPGYKGEIGMPGRPGRPGMNGLKGEKGEPADAGRGVGPRGPPGLPGPPGPPGPPGSFGT
SFYDNNGFLEPGRPGPPGLPGYQGPPGAKGDKGEAGPAGPPGLLPYDFSSLVEHMKGEKG
EAGTKGERGEPGSGGFFSSGVPGLPGPPGPPGYPGVPGPKGESIRGQPGPPGPQGPPGIG
YEGRQGPPGPPGPPGPPSFPGPHRQTISVPGPPGPPGPPGPPGTSGTSSGQLRLWSSYQS
MLQQAHEVPEGWLVYVADREELFVRVRGGLRKVPLEARIALSRGVDNEVAVLQPPVVEYS
PGNPAPAGSLPYPRRGHPHSTAKPWRADDIRAGPLRFPEHGGQHPPYPGVQQQHHDRVPS
YHGAYTNGRPAQPTAALPHAHHDFQPALHLIALNGPQSGSMRGIRGADFQCFQQARQVGL
MGTFRAFLSSRLQDLYSIVRRADRSNVPILNLQDELLFDNWEALFSGSEGQLRPGARILS
FDGRDVLQHAAWPQKSVWHGSDAQGRRLTESYCETWRTDQGTATGQASSLFSGRLLEQKA
VSCHNSFIVLCIENSFMTSSSSK
NT seq
4572 nt
NT seq
+upstream
nt +downstream
nt
atggcgccccttccgagcgccgtggccctcctcttcttgttggccgctcactggcccggc
gccggggctcagttttttaactggtggggcctgaaggcgaccgaagcccccccgggaacc
ctcccggccacctcggcgcctcagggcgggcctgccccctctgcagggcccgcagccccc
agcgcaggcccggcagccgcgagcagcgcccccggggcgatcccggaggagctgacggag
cccggctcccccgcccccgccaatgccagcgctgccccgaccccctcgcgggcgcccccc
gggagggcggacctcaaggaggagaacctcgccggcgtgggcgccaagatcctgaacgtg
gcccaggggatccgcagtctggttcagttctggaatgagagcagcgaagcggagagatcc
gccgagggggaggcggcggccggcgcccccgcgacccttcccacgctcccctcggccggg
gccggggcggagcccagcgccccggggagcgtgagcacccaggctgccggagaggcttcc
ccgcccgacgccccccgcccgacctcctcctcggccccccctccgggaagcggggccccg
gagctggccccgggacagccctcggcccctcccccaggtaaaaacgtgagcgctgaggtg
agcctcgcgcagctgcttgggcagccgcccccccagcatgtctcccaggtctacgacccc
gacagcggcccggcctacgtcttcgggccggacgccagcggcgggcaggtggcgcgctac
cacgtgcccagccctttctaccgggacttctcgctgctcttccacgtcaagcccaccagc
gcgcgggcaggggtgctgctggcgctcacggacgcggcccaggcagtcatctcggtgggc
gtgaagctctcggctccacgtggcggcaagcaggacgtgctcttcttctacacggagccg
ggcgccagcgagacgcgcacggcggccagcttcagcctgccctccttcgtgaaccagtgg
acgcgctttgccctcagcgtggacggtgacgaggtggcgctctatgtcaactgcaaggag
attcagaggctcccgctggcgcggtctgcacaggagctggagctggagcctggggccggc
ctcttcgtggcccaggcaggtggcgctgaccctgataagtttcagggggtgatctccgag
ctaaagctgcgaggggacccccgggtgaccctgctgcagtgtctggatgatgacgatgaa
gacagtgatggggcgtccggagactttggaagcggagagtatgagcaggggggagcctcg
gggtcgcacatgggagggcaacgggagaaccctcgacgtctttcctcccagggggccccc
ttgttgcccaggctccccgaggccccaccggtcacgctgccgcccctggacaggatcccc
acgagttcgcagccgagccttgtggaggcaggagcctcctctggagctcagctcgctcct
agcggggaggagggggcccaaggctcgggcaggcctgaaggggctcaggaccaggacggg
agaggagcagaggaaggccccagatacgagactccaggcttgaaggggcagaaaggtgag
cccggggctcggggcccgcccgggcccgtcggtccccagggccccgccggccccactctc
cacaacccagacggttccacggcgcagcaggtccccgggccgcaggggcctccgggcaag
gacggagagcccggggatcccggtgaggacggaaagccgggcgagatggggcctcagggc
ttcccgggaaccccaggagacgtggggcccaagggcgagaagggagatcctggcattggg
ccgatgggcccccctggtcccccaggacccccgggacctcccggacctgctttccgaccc
gacaagttgacttttatcgacatggaaggctctggctttggaggggacctggagagcata
cggggtcctcgaggattcccagggcccccggggcccccaggcgtgccaggcttaccagga
gagccggggcggtttggaatgaacagcaccggtggaccggcccccccgggccttcctggg
gtgccaggaagagatggctctcccggatcccgaggacccccgggccccgcagggcttcca
ggaaaggacgggcagcaaggcccccagggaccgaaaggagaccggggcgacgtgggctcc
ccaggactgaagggcagcaagggagaggccggcccggttggcgccccgggtgaaacgggc
ttggctggtctcccgggacccatgggccctcgaggactgccgggcccccccgggcctcct
ggccccggctggagagctggatttgatgacatggaaggctcaggggggccgttctggagc
gccggcccgggcacgcgaggggccgcgggaccgcagggactgcccggctttcctgggctc
aagggtgaccagggcgtggctggactccccggagagaagggagatcccggccttcctggg
ctgcgggggcgtgaaggcgagccaggggctcagggcccaaaaggggatgcaggaagcccc
gggcagaagggagaaccagggaaggatggggtggggcagcccggcccccccgggcccccc
ggacccccgggagagctgacctacgtgtccgaggacaggagaacactggccggcgtggca
ggacgggagggcagacccggctacgctggattcccgggcccagctggtcccaagggagat
aacgggctgccgggcttcccgggagccaagggggagaagggtgagcctggaagggtcctc
acgatggctgagaaaggagacaagggggagcaaggccacagggggcctccgggcccatac
gggcggccggggtacaaaggcgaaatcggaatgccgggaagaccgggccgcccgggcatg
aatggcctgaagggtgagaagggggagcctgcagacgccggcagaggcgtaggaccgagg
ggccctcctggactcccagggcccccgggccccccgggccccccaggctcctttggtact
tctttctatgacaataatggattccttgagcccggccgccctgggcctccgggactgcca
ggttaccaaggcccccccggagccaagggcgataagggagaagccggacctgccgggccg
ccagggctcctgccgtatgatttcagctccctggttgagcacatgaagggagagaagggg
gaagcaggcacaaaaggagaacggggggaacccggcagtggaggatttttcagctccgga
gtcccgggcctgcccggcccccctggccccccggggtaccccggagttccgggtcccaag
ggagagagcatcaggggtcagcctgggcccccggggcctcaggggcctccgggcataggc
tacgagggacgacagggcccccccggcccccccggccctccaggaccaccatcgttcccg
ggaccgcacaggcagactatcagtgttcctggcccccccggacccccaggtcccccgggc
cctcccgggacttcagggacatcatcagggcagctgaggctgtggagcagctaccagagc
atgctgcagcaggcccacgaggtgcctgagggctggctggtctacgtggccgacagggag
gagctgttcgtgcgcgtgcgcggcggcctcaggaaggtcccgctcgaggcccggatcgcg
ctctcgcggggggtggataatgaggtcgcggtcctgcagccgcccgtggtggagtattcc
ccggggaacccggcgcccgcgggcagcctcccgtacccccgccggggccatccgcactcc
accgccaagccgtggcgggcggacgacatccgggccggccctctccgcttccccgagcac
ggcgggcagcaccccccgtaccccggcgtccagcagcagcaccacgaccgtgtccccagc
tatcatggtgcctacaccaacgggcggccggcccagcccacggccgcgctgccgcacgcc
caccacgatttccagcctgcgctccatctcatcgctctcaacggtccccagagcggcagc
atgcgcggcatccggggggccgacttccagtgcttccagcaggcccgccaagtgggcctg
atgggcaccttcagggccttcctgtcctcccggctgcaggacctctacagcatcgtgcgc
agggccgaccgcagcaacgtgcccatcctcaacctccaggacgagctcctctttgacaac
tgggaggcgttgttctccggctctgaaggccagctccggccaggcgcccgcatcctctct
ttcgacggcagggacgtcctgcagcacgccgcctggccacagaagagcgtgtggcacggc
tctgacgcccagggacgccggctgacggagagctactgtgagacctggcgcacggaccag
ggcaccgctaccggccaggcgtcctccctgttctcgggcagactgctggagcagaaggcc
gtgagctgccacaactccttcattgtcctctgcattgagaacagcttcatgacctcctcc
tcctccaagtag
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