| Entry |
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| Symbol |
COL18A1
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| Name |
(RefSeq) collagen alpha-1(XVIII) chain isoform X1
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| KO |
| K06823 | collagen type XVIII alpha |
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| Organism |
shr Sarcophilus harrisii (Tasmanian devil)
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| Pathway |
| shr04974 | Protein digestion and absorption |
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| Brite |
KEGG Orthology (KO) [BR:shr00001]
09150 Organismal Systems
09154 Digestive system
04974 Protein digestion and absorption
100917870 (COL18A1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:shr04147]
100917870 (COL18A1)
00535 Proteoglycans [BR:shr00535]
100917870 (COL18A1)
00536 Glycosaminoglycan binding proteins [BR:shr00536]
100917870 (COL18A1)
Exosome [BR:shr04147]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
100917870 (COL18A1)
Proteoglycans [BR:shr00535]
Extracellular matrix (ECM) proteoglycans
Basement membrane proteoglycans
100917870 (COL18A1)
Glycosaminoglycan binding proteins [BR:shr00536]
Heparan sulfate / Heparin
Extracellular matrix molecules
100917870 (COL18A1)
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| SSDB |
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| Motif |
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| Other DBs |
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| LinkDB |
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| Position |
4:complement(463784852..463866075)
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| AA seq |
1523 aa
MAPLPSAVALLFLLAAHWPGAGAQFFNWWGLKATEAPPGTLPATSAPQGGPAPSAGPAAP
SAGPAAASSAPGAIPEELTEPGSPAPANASAAPTPSRAPPGRADLKEENLAGVGAKILNV
AQGIRSLVQFWNESSEAERSAEGEAAAGAPATLPTLPSAGAGAEPSAPGSVSTQAAGEAS
PPDAPRPTSSSAPPPGSGAPELAPGQPSAPPPGKNVSAEVSLAQLLGQPPPQHVSQVYDP
DSGPAYVFGPDASGGQVARYHVPSPFYRDFSLLFHVKPTSARAGVLLALTDAAQAVISVG
VKLSAPRGGKQDVLFFYTEPGASETRTAASFSLPSFVNQWTRFALSVDGDEVALYVNCKE
IQRLPLARSAQELELEPGAGLFVAQAGGADPDKFQGVISELKLRGDPRVTLLQCLDDDDE
DSDGASGDFGSGEYEQGGASGSHMGGQRENPRRLSSQGAPLLPRLPEAPPVTLPPLDRIP
TSSQPSLVEAGASSGAQLAPSGEEGAQGSGRPEGAQDQDGRGAEEGPRYETPGLKGQKGE
PGARGPPGPVGPQGPAGPTLHNPDGSTAQQVPGPQGPPGKDGEPGDPGEDGKPGEMGPQG
FPGTPGDVGPKGEKGDPGIGPMGPPGPPGPPGPPGPAFRPDKLTFIDMEGSGFGGDLESI
RGPRGFPGPPGPPGVPGLPGEPGRFGMNSTGGPAPPGLPGVPGRDGSPGSRGPPGPAGLP
GKDGQQGPQGPKGDRGDVGSPGLKGSKGEAGPVGAPGETGLAGLPGPMGPRGLPGPPGPP
GPGWRAGFDDMEGSGGPFWSAGPGTRGAAGPQGLPGFPGLKGDQGVAGLPGEKGDPGLPG
LRGREGEPGAQGPKGDAGSPGQKGEPGKDGVGQPGPPGPPGPPGELTYVSEDRRTLAGVA
GREGRPGYAGFPGPAGPKGDNGLPGFPGAKGEKGEPGRVLTMAEKGDKGEQGHRGPPGPY
GRPGYKGEIGMPGRPGRPGMNGLKGEKGEPADAGRGVGPRGPPGLPGPPGPPGPPGSFGT
SFYDNNGFLEPGRPGPPGLPGYQGPPGAKGDKGEAGPAGPPGLLPYDFSSLVEHMKGEKG
EAGTKGERGEPGSGGFFSSGVPGLPGPPGPPGYPGVPGPKGESIRGQPGPPGPQGPPGIG
YEGRQGPPGPPGPPGPPSFPGPHRQTISVPGPPGPPGPPGPPGTSGTSSGQLRLWSSYQS
MLQQAHEVPEGWLVYVADREELFVRVRGGLRKVPLEARIALSRGVDNEVAVLQPPVVEYS
PGNPAPAGSLPYPRRGHPHSTAKPWRADDIRAGPLRFPEHGGQHPPYPGVQQQHHDRVPS
YHGAYTNGRPAQPTAALPHAHHDFQPALHLIALNGPQSGSMRGIRGADFQCFQQARQVGL
MGTFRAFLSSRLQDLYSIVRRADRSNVPILNLQDELLFDNWEALFSGSEGQLRPGARILS
FDGRDVLQHAAWPQKSVWHGSDAQGRRLTESYCETWRTDQGTATGQASSLFSGRLLEQKA
VSCHNSFIVLCIENSFMTSSSSK |
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| NT seq |
4572 nt +upstreamnt +downstreamnt
atggcgccccttccgagcgccgtggccctcctcttcttgttggccgctcactggcccggc
gccggggctcagttttttaactggtggggcctgaaggcgaccgaagcccccccgggaacc
ctcccggccacctcggcgcctcagggcgggcctgccccctctgcagggcccgcagccccc
agcgcaggcccggcagccgcgagcagcgcccccggggcgatcccggaggagctgacggag
cccggctcccccgcccccgccaatgccagcgctgccccgaccccctcgcgggcgcccccc
gggagggcggacctcaaggaggagaacctcgccggcgtgggcgccaagatcctgaacgtg
gcccaggggatccgcagtctggttcagttctggaatgagagcagcgaagcggagagatcc
gccgagggggaggcggcggccggcgcccccgcgacccttcccacgctcccctcggccggg
gccggggcggagcccagcgccccggggagcgtgagcacccaggctgccggagaggcttcc
ccgcccgacgccccccgcccgacctcctcctcggccccccctccgggaagcggggccccg
gagctggccccgggacagccctcggcccctcccccaggtaaaaacgtgagcgctgaggtg
agcctcgcgcagctgcttgggcagccgcccccccagcatgtctcccaggtctacgacccc
gacagcggcccggcctacgtcttcgggccggacgccagcggcgggcaggtggcgcgctac
cacgtgcccagccctttctaccgggacttctcgctgctcttccacgtcaagcccaccagc
gcgcgggcaggggtgctgctggcgctcacggacgcggcccaggcagtcatctcggtgggc
gtgaagctctcggctccacgtggcggcaagcaggacgtgctcttcttctacacggagccg
ggcgccagcgagacgcgcacggcggccagcttcagcctgccctccttcgtgaaccagtgg
acgcgctttgccctcagcgtggacggtgacgaggtggcgctctatgtcaactgcaaggag
attcagaggctcccgctggcgcggtctgcacaggagctggagctggagcctggggccggc
ctcttcgtggcccaggcaggtggcgctgaccctgataagtttcagggggtgatctccgag
ctaaagctgcgaggggacccccgggtgaccctgctgcagtgtctggatgatgacgatgaa
gacagtgatggggcgtccggagactttggaagcggagagtatgagcaggggggagcctcg
gggtcgcacatgggagggcaacgggagaaccctcgacgtctttcctcccagggggccccc
ttgttgcccaggctccccgaggccccaccggtcacgctgccgcccctggacaggatcccc
acgagttcgcagccgagccttgtggaggcaggagcctcctctggagctcagctcgctcct
agcggggaggagggggcccaaggctcgggcaggcctgaaggggctcaggaccaggacggg
agaggagcagaggaaggccccagatacgagactccaggcttgaaggggcagaaaggtgag
cccggggctcggggcccgcccgggcccgtcggtccccagggccccgccggccccactctc
cacaacccagacggttccacggcgcagcaggtccccgggccgcaggggcctccgggcaag
gacggagagcccggggatcccggtgaggacggaaagccgggcgagatggggcctcagggc
ttcccgggaaccccaggagacgtggggcccaagggcgagaagggagatcctggcattggg
ccgatgggcccccctggtcccccaggacccccgggacctcccggacctgctttccgaccc
gacaagttgacttttatcgacatggaaggctctggctttggaggggacctggagagcata
cggggtcctcgaggattcccagggcccccggggcccccaggcgtgccaggcttaccagga
gagccggggcggtttggaatgaacagcaccggtggaccggcccccccgggccttcctggg
gtgccaggaagagatggctctcccggatcccgaggacccccgggccccgcagggcttcca
ggaaaggacgggcagcaaggcccccagggaccgaaaggagaccggggcgacgtgggctcc
ccaggactgaagggcagcaagggagaggccggcccggttggcgccccgggtgaaacgggc
ttggctggtctcccgggacccatgggccctcgaggactgccgggcccccccgggcctcct
ggccccggctggagagctggatttgatgacatggaaggctcaggggggccgttctggagc
gccggcccgggcacgcgaggggccgcgggaccgcagggactgcccggctttcctgggctc
aagggtgaccagggcgtggctggactccccggagagaagggagatcccggccttcctggg
ctgcgggggcgtgaaggcgagccaggggctcagggcccaaaaggggatgcaggaagcccc
gggcagaagggagaaccagggaaggatggggtggggcagcccggcccccccgggcccccc
ggacccccgggagagctgacctacgtgtccgaggacaggagaacactggccggcgtggca
ggacgggagggcagacccggctacgctggattcccgggcccagctggtcccaagggagat
aacgggctgccgggcttcccgggagccaagggggagaagggtgagcctggaagggtcctc
acgatggctgagaaaggagacaagggggagcaaggccacagggggcctccgggcccatac
gggcggccggggtacaaaggcgaaatcggaatgccgggaagaccgggccgcccgggcatg
aatggcctgaagggtgagaagggggagcctgcagacgccggcagaggcgtaggaccgagg
ggccctcctggactcccagggcccccgggccccccgggccccccaggctcctttggtact
tctttctatgacaataatggattccttgagcccggccgccctgggcctccgggactgcca
ggttaccaaggcccccccggagccaagggcgataagggagaagccggacctgccgggccg
ccagggctcctgccgtatgatttcagctccctggttgagcacatgaagggagagaagggg
gaagcaggcacaaaaggagaacggggggaacccggcagtggaggatttttcagctccgga
gtcccgggcctgcccggcccccctggccccccggggtaccccggagttccgggtcccaag
ggagagagcatcaggggtcagcctgggcccccggggcctcaggggcctccgggcataggc
tacgagggacgacagggcccccccggcccccccggccctccaggaccaccatcgttcccg
ggaccgcacaggcagactatcagtgttcctggcccccccggacccccaggtcccccgggc
cctcccgggacttcagggacatcatcagggcagctgaggctgtggagcagctaccagagc
atgctgcagcaggcccacgaggtgcctgagggctggctggtctacgtggccgacagggag
gagctgttcgtgcgcgtgcgcggcggcctcaggaaggtcccgctcgaggcccggatcgcg
ctctcgcggggggtggataatgaggtcgcggtcctgcagccgcccgtggtggagtattcc
ccggggaacccggcgcccgcgggcagcctcccgtacccccgccggggccatccgcactcc
accgccaagccgtggcgggcggacgacatccgggccggccctctccgcttccccgagcac
ggcgggcagcaccccccgtaccccggcgtccagcagcagcaccacgaccgtgtccccagc
tatcatggtgcctacaccaacgggcggccggcccagcccacggccgcgctgccgcacgcc
caccacgatttccagcctgcgctccatctcatcgctctcaacggtccccagagcggcagc
atgcgcggcatccggggggccgacttccagtgcttccagcaggcccgccaagtgggcctg
atgggcaccttcagggccttcctgtcctcccggctgcaggacctctacagcatcgtgcgc
agggccgaccgcagcaacgtgcccatcctcaacctccaggacgagctcctctttgacaac
tgggaggcgttgttctccggctctgaaggccagctccggccaggcgcccgcatcctctct
ttcgacggcagggacgtcctgcagcacgccgcctggccacagaagagcgtgtggcacggc
tctgacgcccagggacgccggctgacggagagctactgtgagacctggcgcacggaccag
ggcaccgctaccggccaggcgtcctccctgttctcgggcagactgctggagcagaaggcc
gtgagctgccacaactccttcattgtcctctgcattgagaacagcttcatgacctcctcc
tcctccaagtag |
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