Sarcophilus harrisii (Tasmanian devil): 100917989
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Entry
100917989 CDS
T02286
Symbol
SYNPO
Name
(RefSeq) synaptopodin
KO
K21112
synaptopodin
Organism
shr
Sarcophilus harrisii (Tasmanian devil)
Pathway
shr04530
Tight junction
Brite
KEGG Orthology (KO) [BR:
shr00001
]
09140 Cellular Processes
09144 Cellular community - eukaryotes
04530 Tight junction
100917989 (SYNPO)
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Calsarcin
Motif
Other DBs
NCBI-GeneID:
100917989
NCBI-ProteinID:
XP_031809379
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All DBs
Position
2:complement(382606630..382679460)
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AA seq
1188 aa
AA seq
DB search
MFGAQVFQPPPLGTRPSEGRAHSGDFGLPEEGYKCPAVEPKEGRLNMLEDSEQASLLDLD
EEEEKGLGRISCGMRKDGSQLSNPLLAHLACGPRQALGRSHQTCGTDQDWKVARVQPVTV
SSPSSAQKPALSRSTSLTEKDLTEARVQSQRIAAQLTTPPSSNSRGVLLFHRRRQRVNEF
TFESVGRQGPAPLPGHCSRNPPAESPDHVPELCLNPTARALCPSPSASLGIRAPEAGNPR
FAMEGPGEKADVLTQRPLEKAASEEEEIPLVVYLKENAALLTANGLHLSQSKEPQKGPSA
AEANALPLDVNQNPSLAETAPTTLVSDENQNPPETDAGQKAPARGTQLGVSEAQGPQDGP
MADLEPSALLKDEGAHPAAPDLSSSALINEVKPSAVTPDSRAGPHSEVLPSPTTNVSNVK
SSVLVIDVKPSAPAAGPEPSGPAVGASAPKQHSEVHLTLARPQSVVNRTARPFGVQSQGI
NSQLERSPMLERRPLGERGPRAPAHPIGQRSPQVQRHAVMVRSPMLERRPLRESSPTVER
GLVVERPGMGQRSPVLEKRPLANFTPPPTYAETLSTAAPVSRGRSPPSYSVLYPGTEHKP
ALLKGPSYGEGRSVSAPKTGILEESMARRGNRKSMFTFVEKPKVTPNPDLLDLVQTADEK
RKQRDQGELGPEEEPFALGAEASNFQNEPPPRDWSSPTSEDTLPEWSSCLKSPSIRAKPQ
PKPNQNLTEATGKGAELYARRQSRMEKYVIESPSHTELARCPSPTMSLPPSWKYSNAPGF
PGGFRVASRSPARTPPASLYHGYLPENRTPRREAEPPKQQPYQLQSSLFVLTPAKEPAKA
LARAASPAKPVSLDLEPVGRLGPCPSPALPRAARSSPGLCPSPVGPGGLVQDVSQMSGSS
PTFGGEVSPVSPSRAWSPRAKGQAPRPSFSTRNAGIEPQERWECRPTSPSEAPSSPRPAS
SLDGWVGRGPSEFCPMVTTSSPPPPPPMSPSWSERSLSPMQAEPRGSSRQMQALVARNII
NAARRKSCSSPKSPGAEWLRPLSTTQALPPASPKGLAGPCPPLKSPPGEGHRLSSLPGGT
FSPILKSPLPSSPAPSGDGPRPFLPSPRSPGATRPLGFTSPVPSPGPQAHSLAKPYISRS
PTDSDVDSEDSGLKSPSIRGYSVCPRGWNGGSLRLKRGSLPSETSCTS
NT seq
3567 nt
NT seq
+upstream
nt +downstream
nt
atgtttggcgctcaggtgttccagccaccacccttagggaccagacccagtgaaggaaga
gctcactctggtgactttggacttcctgaggaaggctacaagtgtccagctgtggagccc
aaggagggcaggttgaacatgctggaagattcagaacaggccagtcttttggacctagat
gaggaagaggaaaaaggcttgggcagaatatcctgtggaatgaggaaagatgggtcccag
ctgtcaaatcctctgctggcccatttggcctgtggtcctaggcaagcccttggaagatcc
catcagacatgtggcaccgaccaggactggaaggtagccagagtccaacctgtcacagtt
tctagccccagctcagcccagaaaccagccttgagtcgcagtaccagtctcaccgagaag
gacctgacagaggccagggtgcagagccagcgcatcgctgcccagctgaccacccccccc
agctccaactcccgaggggtcctgctcttccacaggcgccggcagagggtgaacgagttc
acctttgagagcgttgggagacaggggccggcgcctctccctgggcactgctctcggaac
ccgcctgctgagagtccagaccatgttccagagctctgcctgaatcccaccgcacgcgcc
ctgtgcccaagcccttctgcatcccttggaattcgggccccggaagcagggaaccctcgc
ttcgccatggaggggcctggggagaaggcagacgtcctgacgcagagacccctggagaag
gcggccagcgaggaggaggagattcctttggtggtctacttaaaggagaacgcagcctta
ctcacggccaacgggctccacctctcccagagcaaggagccccagaaagggccgtcagcg
gccgaggcaaatgctctccctctggatgttaatcagaatccttccctggccgagactgcg
cccaccacgctggtgagcgacgagaaccagaaccccccggagacggacgccgggcagaag
gccccagcccgcggcacccagctgggcgtgtccgaagcccagggcccacaggacggcccc
atggctgacttggaacccagtgctctgctcaaggatgagggagcccacccagcagcccca
gacttgagttccagtgccctgattaacgaggtaaagccgagtgccgtgacccccgacagc
agggccggcccccactctgaggtcctccccagccccaccacgaacgtctccaatgtcaag
tctagcgtcttggtcattgatgtcaagcccagtgccccagcagcggggccggagccgtct
ggacccgccgtcggcgcctcagcccccaagcagcacagcgaagtccacctcaccctggcc
aggccgcagtcggtggtcaacaggacggccaggccgttcggggtccagtcccaagggatc
aacagccagctggagcgtagccccatgctggagagacggcccctgggggagcggggcccc
agagccccggcacaccccatcgggcagaggagcccccaggtgcagaggcacgctgtgatg
gtgaggagccccatgctggagagacggcccctgagagagagcagccccaccgtggagagg
ggcctggtggtggagaggcccggaatgggccagagaagtcctgtcctggaaaagcgtccc
ctggcaaacttcactccgccccccacctacgcagagaccttgtccacggcagctccagtc
tccaggggcagatcccccccttcttactctgttctgtaccccggcaccgaacacaaacca
gctctcctaaaggggccgagctacggcgagggccgatccgtatctgcccccaagactggc
atcttggaggagtccatggcccgccgaggcaacaggaagtccatgttcaccttcgtggag
aagcccaaagtcacccccaaccctgacctcctggatttggtgcagacggcggatgagaag
cggaagcagagggaccagggggagctgggccccgaggaggagccgtttgcccttggggct
gaggcgtccaactttcagaacgagccccctccccgggactggtcgagccccacctccgag
gacaccctcccagagtggtcttcatgcctgaagtcccccagcatccgggccaagcctcag
ccaaaaccgaaccaaaacctcactgaggccacgggcaagggagccgaactgtatgcccga
cgtcagtcccggatggagaaatacgtgattgagtcaccaagccacaccgagctggcccgc
tgcccatctcccaccatgtccctgcctccctcctggaaatactccaacgctccagggttc
ccggggggcttccgggtggcgagccggagcccggcccggaccccccctgcgtctctgtac
catggctacctgccggagaacaggactccacgcagggaggcagagccccccaaacagcag
ccttaccagctgcagtcctcgctctttgttctcactcccgccaaggagccagccaaggcc
ctggcccgagcagcctcccctgccaagccggtgtctctcgatctggagcccgtggggagg
ctgggcccctgcccttctcctgctctgcctcgggcggcccgctcttcacctggcctgtgc
ccctcgccggtgggccccgggggtctcgtccaagatgtcagccagatgagtggcagcagc
cccacctttggaggcgaagtctccccggtgtctccttcccgggcatggtctcccagagcc
aagggccaagctcccagaccctccttctctacacggaacgcagggattgagccccaggaa
agatgggaatgtcgccccacctccccttccgaggcccccagctcgccgaggccagccagc
agcctagacggctgggtgggccgtggcccttccgagttctgcccgatggtcaccacaagc
agccctcccccacccccacccatgtccccctcctggagcgagcgctccttgtccccaatg
caggccgagcccaggggcagcagccgccagatgcaggccctggttgccaggaacatcatc
aatgctgcccgccgaaagagctgctcctcccccaagtccccgggggcagagtggctgagg
cccctctccaccacgcaggccctccccccggccagccccaaagggctggccggcccctgc
cctcctctgaagagccccccgggagagggccatcgcctgtcctccctgcctggtggtacc
ttctcccccatcttgaagagccccctgccctcgtccccggccccctcgggggacggcccc
cggcccttcctccccagccccaggagccccggtgccaccagacccttgggcttcacgagt
ccggtgccctcccctggcccacaggctcactcacttgccaagccctatatcagccgctca
cccacagactctgacgtcgactctgaggactcgggactcaagtcccccagtatccggggc
tacagcgtctgcccccggggctggaacgggggcagcctgcggctcaagagaggcagcctc
ccttcggagacctcctgtacctcctaa
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