Sarcophilus harrisii (Tasmanian devil): 100918380
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Entry
100918380 CDS
T02286
Symbol
COPA
Name
(RefSeq) coatomer subunit alpha isoform X1
KO
K05236
coatomer subunit alpha
Organism
shr
Sarcophilus harrisii (Tasmanian devil)
Brite
KEGG Orthology (KO) [BR:
shr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
shr04131
]
100918380 (COPA)
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
shr04147
]
100918380 (COPA)
Membrane trafficking [BR:
shr04131
]
Endoplasmic reticulum (ER) - Golgi transport
Retrieval pathways
Coat protein complex I (COP-I)
100918380 (COPA)
Exosome [BR:
shr04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
100918380 (COPA)
Exosomal proteins of bladder cancer cells
100918380 (COPA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
COPI_C
B-prop_COPA_B_2nd
WD40
WD40_Prp19
WD40_WDHD1_1st
WD40_CDC20-Fz
WDR55
Beta-prop_EML_2
TPR_COPA_B
Beta-prop_WDR90_POC16_2nd
EIF3I
Beta-prop_TEP1_2nd
Beta-prop_EML
Beta-prop_CAF1B_HIR1
Beta-prop_TEP1_C
Beta-prop_EIPR1
Beta-prop_WDR75_1st
WD40_RFWD3
WD40_MABP1-WDR62_1st
ANAPC4_WD40
WD40_MABP1-WDR62_2nd
Beta-prop_SCAP
Beta-prop_SPT8
Beta-prop_IFT140_1st
NBCH_WD40
Beta-prop_RIG_2nd
Motif
Other DBs
NCBI-GeneID:
100918380
NCBI-ProteinID:
XP_031822731
Ensembl:
ENSSHAG00000006995
UniProt:
G3VY09
LinkDB
All DBs
Position
4:complement(363363776..363407716)
Genome browser
AA seq
1224 aa
AA seq
DB search
MLTKFETKSARVKGLSFHPKRPWILTSLHNGVIQLWDYRMCTLIDKFDEHDGPVRGIDFH
KQQPLFVSGGDDYKIKVWNYKLRRCLFTLLGHLDYIRTTFFHHEYPWILSASDDQTIRVW
NWQSRTCVCVLTGHNHYVMCAQFHPSEDLVVSASLDQTVRVWDISGLRKKNLSPGAVESD
VRGITGVDLFGTTDAVVKHVLEGHDRGVNWAAFHPTMPLIVSGADDRQVKIWRMNESKAW
EVDTCRGHYNNVSCAVFHPRQELILSNSEDKSIRVWDMSKRTGVQTFRRDHDRFWVLAAH
PNLNLFAAGHDGGMIVFKLERERPAYAVHGNMLHYVKDRFLRQLDFNSSKDVAVMQLRSG
SKFPVFNMSYNPAENAVLLCTRASNLENSTYDLYTIPKDADSQNPDAPEGKRSSGLTAVW
VARNRFAVLDRMHSLLIKNLKNEITKKVQVPNCDEIFYAGTGNLLLRDADSITLFDVQQK
RTLASVKISKVKYVIWSADMSHVALLAKHAIMICNRKLESLCNIHENIRVKSGAWDESGV
FIYTTSNHIKYAVTTGDHGIIRTLDLPIYVTRVKGNNVYCLDRECRPRVLTIDPTEFKFK
LALINRKYDEVLHMVRNAKLVGQSIIAYLQKKGYPEVALHFVKDEKTRFSLALECGNIEI
ALEAAKALDDKNCWEKLGEVALLQGNHQIVEMCYQRTKNFDKLSFLYLITGNLEKLRKMM
KIAEIRKDMSGHYQNALYLGDVSERVRILKNCGQKSLAYLTAATHGLDEEAESLKETFDP
EKETIPDIDPNARLLQPPAPIMPLDTNWPLLTVSKGFFEGSIASKGKGGALAADIDIDTV
GTEGWGEDAELQLDEDGFVEAADGFGDEALAKGQEEGGGWDVEEDLELPPELDVSPGAIG
GTEDGFFVPPTKGTSPTQIWCNNSQLPVDHILAGSFETAMRLLHDQVGVTQFGPYKQLFL
QTYARGRTTYQALPCLPTMYGYPNRNWKDAGLKNGVPAVGLKLNDLIQRLQLCYQLTTAG
KFEEAVEKFRSILLSVPLLVVDNKQEIAEAQQLIAICREYIVGLSMEIERKKLPKESLEQ
QKRTCEMAAYFTHSNLQPVHMILVLRTALNLFFKLKNFKTAATFARRLLELGPKPEVSQQ
TRKILSACEKNPTDAYQLNYDMHNPFDICAASYRPIYRGKPVEKCPLSGACYCPEFQGQI
CRVTTVTEIGKDVIGLRISPLQFR
NT seq
3675 nt
NT seq
+upstream
nt +downstream
nt
atgctgaccaaattcgagaccaagagcgcgcgagtcaaaggactcagctttcaccccaaa
cgaccctggatcttgactagtcttcacaatggagtcatccagctctgggattaccggatg
tgtaccctcattgacaaatttgatgagcacgatggtcctgtacgagggattgacttccac
aaacagcagccactgttcgtctctggaggagatgattataagatcaaggtctggaattac
aaacttcggcgctgcctgttcactttgcttggacacctggattatattcgtaccacattt
tttcatcatgaatatccttggattctgagtgcctcggatgatcagaccattcgtgtatgg
aactggcagtctaggacctgtgtctgtgtgctaacaggacacaaccactatgtaatgtgt
gcccagttccacccttcagaagacctggtagtatcagctagcctggaccagactgttcgt
gtttgggatatttctggtctgagaaagaagaatctttcccctggagctgtggagtcagat
gtgaggggaataacaggggttgatctctttgggacaacggatgcagtcgtaaaacacgtt
ttggagggtcatgatcgtggagttaattgggctgccttccatcccactatgcctctcatt
gtgtctggggcagatgaccgtcaagtgaagatttggcggatgaatgaatctaaggcttgg
gaggtagatacctgtcgaggtcactacaataatgtctcctgtgctgtcttccaccctcgt
caagaactcatcctcagcaattctgaagataaaagtatccgagtgtgggatatgtcaaaa
cggactggagttcagaccttccgaagagaccatgaccgtttttgggttctagctgcccat
cccaatctcaatctctttgctgcaggtcatgatggtggtatgattgtctttaaattggaa
cgggagcgaccagcttatgctgtccatggcaacatgctgcactatgtcaaggatcgattc
ttgcgccagttagattttaacagctctaaagatgttgctgtcatgcagttgaggagtggt
tccaagtttccagtgttcaacatgtcgtataatccagcagagaatgcagtccttctatgc
acaagagccagtaacctagaaaacagcacctatgatctatataccattcccaaggatgcc
gactctcagaatcctgatgcccctgaaggaaaacgttcctctggcctgacagccgtatgg
gttgcccgaaatcgttttgctgtcctggatcgtatgcattcacttctgatcaagaacttg
aagaatgaaatcaccaagaaagtgcaggtacctaattgtgatgagatcttttatgcaggc
acagggaatctgctgcttcgtgatgctgattccatcacactttttgatgtacagcagaaa
cggactctagcatccgtgaagatttccaaagtgaagtatgtcatttggtcagcagatatg
tcccatgtagccctgctggccaagcatgccatcatgatctgcaatcgtaaactggaatca
ctttgtaacatccatgagaatattcgtgtcaagagcggggcctgggatgagagtggtgtg
tttatctataccaccagcaaccacatcaaatatgctgtcactactggggaccatgggatc
atccgtacccttgatttgccaatctatgtcacaagggtaaagggaaataatgtgtactgt
ctagaccgagagtgtcgtccacgagtgcttaccattgatcccactgagttcaaattcaag
ctagccttgatcaataggaaatatgatgaggtactgcacatggtgcggaatgccaagttg
gtgggccagtccatcattgcctatctccagaagaaaggctatcctgaagtggcactacat
tttgttaaggatgagaagactcgatttagtttggctctggaatgtggaaacattgagatt
gctctagaagcagccaaggctctagatgacaagaattgctgggaaaagctaggagaagta
gctctactccagggaaatcatcagattgtggagatgtgctaccagcgtaccaagaatttt
gataagctttccttcctatacctcatcactggcaaccttgagaaacttcgaaagatgatg
aaaattgctgagattcgaaaagacatgagtggccattaccagaatgccctgtacctgggt
gatgtttcagaacgtgtgcgcatcttgaagaattgtgggcagaaatccctggcctacctt
acagctgccacccatggtctggatgaagaagcagagagcctcaaggaaacatttgaccca
gaaaaggagacaattccagacattgaccctaatgccaggctgcttcagccacctgcaccc
atcatgccattggacactaactggcccctactaactgtttccaaaggcttctttgagggt
tccattgccagcaagggaaaaggaggtgcactggctgctgacatagacattgatactgtt
ggcactgaaggttggggagaggatgcagagctgcagctggatgaagatggattcgtggaa
gcagcagatggttttggtgatgaagctcttgctaagggacaggaagaaggaggtggctgg
gatgttgaggaagacttagagctcccacctgagctagatgtttctcctggagcaattgga
ggcactgaagatggattctttgtgcctcccactaagggaacaagtcctactcagatctgg
tgcaataattcccaactgccagttgaccacatcctagcaggctcttttgagacagctatg
cggctccttcacgaccaggttggggtaacccaatttggcccctataagcaactgtttctc
cagacatatgcccgaggccgaaccacataccaggctctgccctgcctacctaccatgtat
ggttacccaaaccgcaattggaaggatgcagggctaaagaatggtgttccagctgtggga
ctgaagcttaatgatctaatccaacgactgcaactgtgctatcagctcactacagcgggc
aagtttgaggaggcagtggagaaattccgttctatcctgcttagcgtgccacttcttgta
gtagacaataagcaagaaattgctgaggcccagcagctcattgccatctgtcgtgagtac
attgtgggcttgtcaatggaaatcgagaggaagaagttgcctaaggagagcctagaacag
cagaagcgcacctgcgagatggcagcttacttcacccattccaatctgcagcctgtccac
atgatcctggtgcttcgcacagcccttaatctcttctttaaactcaagaacttcaagact
gctgctacctttgcacggcgcctgttagagctggggcccaagcctgaggtgtcccagcag
actcgaaagatcctgtcagcctgtgagaagaaccccactgatgcctaccagctcaattat
gacatgcacaacccttttgatatctgtgctgcatcctaccgacctatttaccgtggcaag
ccagtggaaaagtgtcccctcagtggggcttgctattgccctgagtttcaaggccagatc
tgccgtgtcaccacagtaacagaaattggcaaagatgtgattggtctaagaatcagtcct
ctgcagttccgctga
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integrated database retrieval system
