Sarcophilus harrisii (Tasmanian devil): 100918678
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Entry
100918678 CDS
T02286
Symbol
DICER1
Name
(RefSeq) endoribonuclease Dicer
KO
K11592
endoribonuclease Dicer [EC:3.1.26.-]
Organism
shr
Sarcophilus harrisii (Tasmanian devil)
Pathway
shr05206
MicroRNAs in cancer
Brite
KEGG Orthology (KO) [BR:
shr00001
]
09160 Human Diseases
09161 Cancer: overview
05206 MicroRNAs in cancer
100918678 (DICER1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
shr03036
]
100918678 (DICER1)
Chromosome and associated proteins [BR:
shr03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
100918678 (DICER1)
microRNA pathway
RISC loading complex
100918678 (DICER1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Dicer_platform
Dicer_dsRBD
Dicer_PBD
Ribonuclease_3
Ribonucleas_3_3
Dicer_dimer
PAZ
ResIII
DEAD
Helicase_C
Cas3-like_C_2
Amidoligase_2
Motif
Other DBs
NCBI-GeneID:
100918678
NCBI-ProteinID:
XP_003756622
Ensembl:
ENSSHAG00000012077
UniProt:
G3WFC6
LinkDB
All DBs
Position
2:369030987..369126333
Genome browser
AA seq
1923 aa
AA seq
DB search
MKSPALQPLSMAGLQLMTPASSPMGPFFGLPWQQEAIHDNIYTPRKYQVELLEAALDHNT
IVCLNTGSGKTFIAVLLTKELSYQIRGNFNRNGKRTVFLVNSANQVAQQASAVRTHSDLK
VGEYSSLEISASWTKEKWNQEFIKHQVLVMTCQVALNVLKNDYLSLSNINLLVFDECHLA
ILDHPYREIMKICEDYPSCPRILGLTASILNGKCDPAELEEKIQKLEKILKSNAETATDL
VVLDRYTSQPCEIVVDCGPYTDTSGLYERLLKELDEALNFLNDCNISVHSKEKDSILISK
QILSDCRAVLVVLGPWCTDKVAGMMVRELQKYIKHEQEELHRKFLLFTDTFLRKIHALCE
EHFSPASLDLKFVTPKVIKLLEILRKYKPYERQQFESVEWYNNRNQDNYVSWSDSEDDDE
DEEIEEKEKPETNFPSPFTNILCGIIFVERRYTAVVLNRLIKEAGKQDPELAYISSNFIT
GHGIGKNQPRNKQMEVEFRKQEEVLRKFRAHETNLLIATSIVEEGVDIPKCNLVVRFDLP
TEYRSYVQSKGRARAPISNYIMLADSDKIKSFEEDLKTYKAIEKILRNKCSKSVDTGETE
TEPIVDDDDIFPPYVLRPDDGSPRVTINTAIGHINRYCARLPSDPFTHLAPKCKTRELSD
GTFYSTLYLPINSPLRAAIVGPPMSCARLAERVVALICCEKLHKIGELDDHLMPVGKETV
KYEEELDLHDEEETSVPGRPGSTKRRQCYPKAIPECLRNSYPKPDQPCYLYVIGMVLTTP
LPDELNFRRRKLYPPEDTTRCFGILTAKPIPQIPHFPVYTRSGEVTISIELKKSGFTLSL
QMLELITRLHQYIFSHILRLEKPALEFKPTEADSAYCVLPLNVVNDSSTLDIDFKFMDDI
EKSEARTGIPSTQYTKETPFIFKLEDYQDAVIIPRYRNFDQPHRFYVADVYTDLTPLSKF
PSPEYETFAEYYKTKYNLDLTNLNQPLLDVDHTSSRLNLLTPRHLNQKGKALPLSSAEKR
KAKWESLQNKQILVPELCAIHPIPASLWRKAVCLPSILYRLHCLLTAEELRAQTAIDAGV
GVKSLPADFRYPNLDFGWKKSIDSKSFISIPNSSLAENENYCKHSTIVVPENAAHQGTNR
TSSLENHDQMSVTCRSLFSESPNKIQIEVSTELTAINGISYNKNLANGSYDLVNRDFCQG
NQLNYYRQEIPVQPTTSYPIQNLFNSENQPKPNNECTLLSNKYLDGNANKSTSDGCPTKA
VTVTTSTSETSVTSKGRIDSEQSPSNGYSSKTLGPNPGLILQALTLSNASDGFNLERLEM
LGDSFLKHAITTYLFCTYPDAHEGRLSYMRSKKVSNCNLYRLGKKKGLPSRMVVSIFDPP
VNWLPPGYIVNQDKSNTDKWEKDEMTKDNMLANGKLDEDYDEEEDEDLMWRVPKEEVDYE
DDFLEYDQEHIKFIDNMLMGSGAFVKKISLSPFSTNDSNYEWKMPKKSSLGNIPFSSDID
DFDYSSWDAMCYLDPSKAVEEDDFVVGFWNPSEENCGIDTGKQSISYDLHTEQCIADKSI
ADCVEALLGCYLTSCGERAAQLFLCSLGLKVLPVIKRSDWENTLYPSKDNFNSQQKNLSV
NFASISVANLQSSLYKDLEYGCLKIPPRCMFDYPDAEKTLNHLISGFENFEKKINYNFKN
KAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPRQHSPGVLTDLRSAL
VNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVQFQLEKNEMQGMDSELRRSEEDEEKE
EDIEVPKAMGDIFESLAGAIYMDSGMSLEMVWQVYYPMMRPLIEKFSANVPRSPVRELLE
MEPETAKFSPAERTYDGKVRVTVEVVGKGKFKGVGRSYRIAKSAAARRALRSLKANQPQV
PNS
NT seq
5772 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagccctgctttgcaacccctcagcatggcaggactacagctcatgacccctgct
tcctcaccaatgggtcctttttttggactaccatggcaacaagaagcaattcatgataac
atttacaccccaagaaaatatcaggttgaactgcttgaagcagctctggatcataatacg
atagtctgtttaaacactggctcagggaagacgtttattgcagtactactcactaaagag
ctgtcctatcagatcaggggaaatttcaacagaaatggaaaaaggacggtgttcttggtc
aactctgcaaaccaagttgctcagcaagcatcagctgtcagaacgcattcagatctcaag
gttggagaatattcaagcttagaaattagtgcatcttggacaaaggagaaatggaaccaa
gagtttattaaacaccaggttctggttatgacctgtcaagttgccttgaatgttttgaaa
aatgattacttatcattatccaacattaatctgttggtatttgatgagtgtcatcttgca
atcctggaccatccctatagagaaattatgaagatctgtgaagattatccatcatgtcct
cgaattttgggattaactgcttctattttaaatgggaagtgtgatcctgcagaattagag
gagaagattcagaaactggagaaaatccttaagagtaatgctgaaactgcaactgatttg
gtagtcttagacagatatacttctcaaccatgtgagattgtggtagattgtggaccatat
actgatactagtgggctctatgaaaggctgctaaaggaattggatgaagcacttaatttt
ctcaatgactgcaacatatctgtgcattcaaaagaaaaggattctatattaatttctaaa
cagattctttcagactgccgagcagtattggtggttctgggaccctggtgtacagataag
gtagctgggatgatggtaagagaacttcagaaatatatcaaacatgagcaagaggagctg
cacaggaaatttttattgtttacagacactttcttaaggaaaatacatgcactctgtgaa
gagcacttctcacctgcctcacttgacctgaaatttgttacaccgaaagtaataaaactg
cttgaaattttacgtaaatataaaccatatgagcggcagcagtttgagagtgttgaatgg
tataataataggaatcaagataattatgtgtcttggagtgattctgaagatgatgatgag
gatgaagaaattgaagaaaaagagaagccagagacaaattttccctctccatttaccaat
attttatgtggtattatttttgtggagagaagatatacagcagttgttttaaacagattg
ataaaagaagctggcaaacaagatccagagctggcttatattagcagcaattttataact
ggacatggcattggaaagaatcagcctcgtaacaaacagatggaagtggaattcagaaaa
caggaagaggtacttaggaaatttagggcacatgagaccaaccttcttattgcaaccagt
attgtagaggaaggtgttgacataccaaaatgcaacttggtggttcgttttgatttgccc
acggaataccgatcttatgtacaatccaagggaagagcaagggcacccatctctaattat
attatgctagctgattcagacaaaataaaaagttttgaagaagatctcaaaacctacaaa
gctattgaaaagattttaagaaataaatgttcgaagtcagttgatactggtgagactgaa
actgaacctattgtggatgatgatgacattttcccaccatatgttttgaggccagatgat
ggaagtccacgagtcacaattaatacagccattggacacataaatagatattgtgcaaga
ttaccaagtgatccatttactcatctagctcctaagtgtaaaacccgtgaattgtcagat
ggtacattttattcaactctctatctgccaattaactcacctctccgagctgccattgtt
ggtccaccaatgagttgtgcaagactggctgaaagagttgtagctctcatttgctgtgaa
aaactgcacaaaattggtgaattagatgatcatttgatgccagttggaaaagagactgtt
aaatatgaggaagagcttgatttgcatgatgaagaagaaaccagcgttccaggtcgacca
ggctccacaaaaagaaggcagtgttaccccaaagcaattccagaatgtttgaggaatagt
tatcctaagcctgatcagccctgttacttatatgtaattgggatggtattaactacccct
ttacctgatgagcttaactttaggagaagaaaactctatcctccagaggataccacaaga
tgctttggaatactgacagccaaacctatacctcagattcctcattttcctgtgtataca
cgctctggagaggttactatatctattgagttgaagaagtctggtttcactttgtcatta
caaatgcttgagctgatcacgagacttcaccagtacatattctcacatattcttcggctt
gaaaaacctgcactagaattcaaacccacagaagctgattcagcctactgtgttctacct
cttaatgttgttaatgactccagcactttggacattgactttaagttcatggatgatatt
gaaaaatctgaagctcgtacaggcattcccagtactcagtatacgaaagaaacacctttt
attttcaaactagaagattaccaggatgcagttatcattccaaggtatcggaattttgat
cagcctcatcgattttatgttgctgatgtatatactgatcttacaccactcagtaaattc
ccatcccctgaatatgaaacttttgcagaatattataaaacaaagtacaatcttgatctg
accaatctaaaccagcctttgctggatgtggaccatacatcttcaagactaaatctattg
actcctcgccatttaaatcagaaggggaaagcccttcctttaagtagtgctgaaaaaagg
aaagccaaatgggaaagtctgcaaaataaacagatactggttcctgagctctgtgcaatt
catccaattcctgcatcattatggagaaaagcagtttgtctccctagcatcctttatcgc
ctgcactgccttttgacagcagaggaactaagagcccagacagccattgatgctggcgta
ggggtcaaatcactccctgctgatttcagatatcctaatttggactttggatggaaaaaa
tctattgacagtaaatctttcatctcaattcctaactcctctttagctgaaaatgaaaat
tactgtaagcacagcacaattgtagtccctgaaaatgctgcacatcaaggcactaataga
acctcttctctagaaaatcatgaccagatgtctgtgacctgcagatcattattcagtgag
tcacccaataagattcaaattgaagtttccacagaactcacagcaattaatggtatttca
tacaataaaaatcttgccaatggcagttatgatttagtcaatagagacttttgccaagga
aatcagctaaattactacaggcaggaaatacctgtacaaccaactacctcatatcccatt
cagaatttattcaatagtgagaaccagcccaaacccaacaatgaatgtactctgctgagt
aataaataccttgatggaaatgctaacaaatctacctcagatggatgccccacaaaggca
gtgacagtgaccaccagtacttcagaaacttctgttacttcaaaagggagaattgattct
gaacaaagcccttccaatgggtattcctcaaaaacccttggcccaaatcctggactcatt
cttcaggctttgacgctttccaatgcgagtgatggatttaacttggagcgacttgaaatg
cttggtgactcctttttaaagcacgcaatcaccacgtatctgttttgcacttaccctgat
gctcatgagggccgcctttcttacatgagaagtaaaaaggtcagcaactgtaatctctat
cgccttgggaaaaagaaaggtctgcccagtcgcatggtagtgtcaatttttgatccccct
gtaaattggcttcctcctggttatatagtaaatcaagacaaaagtaacacagataaatgg
gagaaagatgaaatgacaaaagacaacatgttggcaaatggtaagctagatgaagattat
gatgaggaggaagatgaagatctgatgtggagggttccaaaagaggaagtagattatgag
gacgatttcttagagtatgatcaggaacatattaagtttatagataatatgttaatggga
tcaggggcttttgtgaagaaaatatctctttctccattttcaaccaatgattcaaattat
gaatggaaaatgcccaaaaaatcatccctaggtaatataccattttcatctgatattgat
gattttgattatagctcttgggatgcaatgtgctatttggatcctagcaaagctgttgaa
gaagatgattttgtagtagggttctggaatccatcagaagaaaactgtggtattgacaca
ggaaaacagtcaatttcttatgacttgcatacagagcagtgtattgctgataaaagcatt
gcagactgtgtggaagctctactgggctgctatttaaccagctgtggtgagagagctgct
caactttttctctgttctttggggctgaaggtgctcccagtaattaaaaggagtgattgg
gagaacacattataccccagtaaggataatttcaacagtcaacaaaagaatctttcagtg
aactttgcttctatctctgtagccaatttacagtcttctttatataaagacttagaatat
ggctgtttgaagattccgccgaggtgcatgtttgattatccagatgctgaaaaaacactg
aatcaccttatatcaggctttgaaaattttgaaaagaaaattaactacaatttcaagaat
aaagcttaccttcttcaagcatttactcatgcctcctaccactacaataccattactgat
tgttatcagcgtttggaattcttgggagatgcaattttggactacctcataaccaagcac
ctttatgaagacccacggcagcactccccaggagttctaactgacctaagatctgctctt
gtcaataatactatctttgcatcattagctgttaagtatgactaccacaagtacttcaaa
gctgtttctcctgaattattccatgttattgatgattttgtgcagtttcaacttgagaag
aatgaaatgcaaggaatggattctgagcttagacgatctgaggaggatgaagagaaagag
gaagatatagaagtgccgaaggctatgggagatatatttgaatcacttgctggtgccatt
tatatggatagtggaatgtcattggaaatggtttggcaagtctattatccaatgatgcga
ccattaatagaaaaattttctgctaatgtcccccgttctcctgtaagagaattgcttgag
atggaaccagaaactgccaaatttagccctgcagaaagaacctatgatggaaaggtccga
gttactgtggaagtggttgggaagggaaagtttaaaggtgttggccggagctacaggatt
gccaaatctgcagctgcgaggagagcactacgaagcctcaaagcaaatcagcctcaggtt
cccaacagctga
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integrated database retrieval system
