Sarcophilus harrisii (Tasmanian devil): 100918768
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Entry
100918768 CDS
T02286
Symbol
PCDHB1
Name
(RefSeq) protocadherin beta-1
KO
K16494
protocadherin beta
Organism
shr
Sarcophilus harrisii (Tasmanian devil)
Brite
KEGG Orthology (KO) [BR:
shr00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
shr04515
]
100918768 (PCDHB1)
Cell adhesion molecules [BR:
shr04515
]
Cadherins
Protocadherins
100918768 (PCDHB1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Cadherin_2
Cadherin_C_2
Cadherin_CELSR2_9th
MP_p6
ZirS_C
Motif
Other DBs
NCBI-GeneID:
100918768
NCBI-ProteinID:
XP_003756704
Ensembl:
ENSSHAG00000007367
UniProt:
G3VZ99
LinkDB
All DBs
Position
2:373890062..373895017
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AA seq
820 aa
AA seq
DB search
MAALQGKLRANRQIVALFLFLCASEGDAGTVRYSVAEEMESGSFVANVAKDLGLEAGELL
TRGARLVSDDSKQHFRLHRKTGDLFVKEKLDREELCGKADPCVLRFEIVLEEPLQSFRAE
VRVFDINDNAPVFPNRGPLLKIPESTPLGSRFPLQSAQDWDVGLNGLQNYTLSSNAYFHL
HTRFRSHGPKYAELVLIKPLDREEQPQINLTLTAVDGGSPAKSGTAQILVLVLDVNDNVP
QFSRLVYRTQILENSPNGSLVISVSATDLDDGTNREITYSLAHNPEGIHQTFQINSENGE
IRLRGPVDFEAVENYDIDVQAIDGGGLSAHSKVLVEVVDVNDNAPDVLVTSISSPIPEDS
PLNTVVALFGVRDRDVRVGGKITCFLQGNLPFTIKPTFRNSYSLVTGGALDREKVPGYNL
TIIAMDTGTPTLSTETTIEVLISDINDNPPVFKEASYTMTVRENNSPAVFIGKVHAEDLD
SEENAQITYSLLPPESGDLSVFSYISINSNNGKLYALRSMDYEAIQAFQFVVKAVNGGPL
PLSSQITVRVVVLDVNDNLPMILYPLQNSTSPCNDLVPRAAEVGYLVTKVVAVDGDSAQN
SWLSYELLKATDLGLFSVGRQNGEIRTLRVITERDHMKQKMVIVVRDHGQPSLSTTATLN
ILLVDGFSDPYVQLRDQSKRERKTKPSTKYLVISLAVLSCFFLFSVTVIFLIHIYQKIKY
REKQFTASEHFYYDCSFPSHLIDGQSGETLGRVCPYEVGSATGTSNSEFRFLKRLMPNFP
APSGVVERNKEESENHVPSNLDLDSPRRSEGPLRMSDEYM
NT seq
2463 nt
NT seq
+upstream
nt +downstream
nt
atggcagctctacagggtaaacttcgggctaacagacaaatcgtagcccttttcctcttt
ctgtgcgcatccgagggtgatgcggggacagtgcggtattcggtggctgaagagatggag
agcggttcctttgtggccaatgtagccaaggacctgggactggaggcgggagagttgttg
accagaggggcgcggctggtttcagatgacagcaaacagcattttcgactccaccgcaag
acgggagacctcttcgtgaaagagaagttggaccgagaggagctgtgcgggaaagcagac
ccgtgcgtgctacgctttgaaatagtcctggaggagccgttgcagtccttcagagccgag
gtaagggtttttgatatcaatgacaatgccccagtgttcccaaatcgcgggccactttta
aaaatccctgaaagcactcccctgggctctcggtttcctttgcagagcgcccaggattgg
gacgtagggctcaatggtcttcagaattacactctgagttccaacgcctatttccacttg
cacactcgtttccgcagccacggccccaaatatgcggaactcgtactaattaaacctcta
gatcgagaggaacagcctcagattaacttaaccctcaccgcagtggatggcggctccccg
gctaaatctggaacagctcagatcctcgtcttggttcttgatgtaaatgacaacgtccct
cagttttctcggttggtgtaccgcacccagatattggaaaatagtcccaatggttcttta
gtaatctctgtgtccgctaccgacctagatgacggcactaaccgagaaataacgtattct
ttggctcataatccagaaggaattcatcagacttttcaaatcaactctgaaaatggagaa
atccgacttcgaggaccagtggattttgaagctgttgagaattatgatattgatgttcaa
gccattgatggtggggggctgtctgctcacagcaaagtcctggtggaagtggtagatgtg
aacgataatgctccggacgtactggtcacttccatttcaagcccaatcccagaggactct
ccactcaatacagtcgttgccctttttggtgttcgagaccgtgacgttcgagtaggaggg
aaaatcacctgcttccttcaaggcaatcttccatttaccatcaaaccgacattcagaaat
tcctattccttggtcactggaggggcccttgatcgtgagaaagtcccaggatataacttg
acaattatagcaatggatacaggtactcctacgctgtccacagagacaaccatcgaagtg
ctgatctccgatattaatgataatccccctgtgtttaaggaggcgtcttataccatgact
gtcagagagaataacagccctgcagtgtttattggtaaagtgcacgctgaggatttagat
tctgaggagaatgcccagattacttattcactgcttcctcccgaaagtggtgatctttct
gtcttctcctatatctccattaattcgaacaatgggaagctctatgctttgagatctatg
gattatgaagcaatccaagcctttcaattcgttgtgaaggcggtaaatggtgggcccctg
cctttgagcagccaaatcacggtccgagtagttgtcttggatgtcaacgacaacctcccg
atgatcttgtaccccctgcaaaatagcacttcgccttgcaatgatctggtgcccagggca
gcagaggtgggttacttggtgacaaaagtggtcgctgttgatggggactctgctcagaat
tcttggctttcttatgaattgctcaaggccacagaccttgggctgttttccgtgggacgg
caaaacggagaaattcgaaccttacgggtgataacggagagagatcatatgaagcaaaaa
atggtcattgtggttcgggatcacggccagcctagtctctcaaccactgccacactgaat
attctgctggtagatggtttctctgatccttatgtacagcttcgggatcagtccaagcgg
gagaggaaaacaaaaccctccaccaaatacctagttatttccctggctgtgctttcctgt
ttctttctgttttcagtcactgtaattttccttattcacatctatcagaaaatcaaatat
cgagaaaaacagtttactgcctctgagcacttctactatgactgcagtttccctagtcat
ttgatagatgggcagagtggggagactctgggccgagtctgtccttatgaagtgggttct
gctacaggcactagtaatagtgagtttcgatttctcaaacgactcatgcccaactttcca
gctccctccggtgtggtagaaagaaataaagaagaatctgaaaaccatgtaccctccaac
ttggatctggatagcccaaggagatcagagggccctctcagaatgtctgatgaatatatg
taa
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