Sarcophilus harrisii (Tasmanian devil): 100919478
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Entry
100919478 CDS
T02286
Symbol
ATXN2
Name
(RefSeq) ataxin-2 isoform X1
KO
K23625
ataxin 2/2L
Organism
shr
Sarcophilus harrisii (Tasmanian devil)
Pathway
shr05014
Amyotrophic lateral sclerosis
shr05017
Spinocerebellar ataxia
shr05022
Pathways of neurodegeneration - multiple diseases
Brite
KEGG Orthology (KO) [BR:
shr00001
]
09160 Human Diseases
09164 Neurodegenerative disease
05014 Amyotrophic lateral sclerosis
100919478 (ATXN2)
05017 Spinocerebellar ataxia
100919478 (ATXN2)
05022 Pathways of neurodegeneration - multiple diseases
100919478 (ATXN2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
shr03019
]
100919478 (ATXN2)
Messenger RNA biogenesis [BR:
shr03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
100919478 (ATXN2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SM-ATX
LsmAD
PAM2
LSM
Motif
Other DBs
NCBI-GeneID:
100919478
NCBI-ProteinID:
XP_031804441
Ensembl:
ENSSHAG00000007304
LinkDB
All DBs
Position
1:complement(689008465..689104855)
Genome browser
AA seq
1055 aa
AA seq
DB search
MRMVHILTSVVGSKCEVQVKNGGVYEGVFKTYSPKCDLVLDAAHKKTTDSSPGPKREDIV
ERILFKCSDFVVVQFKDMDSNYARRVPSETDAFTDSAISAKVNGEHKEKDLEPWDGGETA
TTEEFEALETDVSNGWDPNDMFRYNEENYGVVSTYDSSLSSYTVPLERDNSEEFLKREAR
ANQLAEEIESSAQYKARVALENDDRSEEEKYTAVQRNASEREGHSLNTRESKYIPPGQRT
RDVMTWGSGRQNSPRMGQPASGPTPSRSGSHTSEFNLNSAADQRVVNGGVPWPSPCPSPS
SRPPSRYQSGPNSLPPRAATPTRPPSRPPSRPSRPPSHPSAHGSPAPVSTMPKRMSSEGP
PRMSPKAQRHPRGHRVSTGRGSISSGLEFVSHNAPGEVSAPPVARSSPSGGTWSSVVSGV
PRLSPKTHRPRSPRQNNIANTPPGPILSSPQAGTVPTESVAVPVPAASPTPANLASNRAV
TPSSDAKDSRLQDQRQNSPAGNKENIKPSETSPSFVKAENKGISPIVSEHRKQIDDLKKF
KNDFRLQPSSTPDSVDHLLNKNREGEKPRDMIKDQPEPSSKDILLENISAGCPSSSSKPG
SPCISPSASGSSDQKRGPEVTSQGVQTASPGSKHDKEDQEDKKDAAEQVRKSTLNPNAKE
FNPRSFAQPKPSTTPTSPRPQAQPSPSMVGHQQPTPVYTQPVCFAPNMMYPVPVSPGVQP
LYPIPMTPMPVNQAKTYRAGKVPNMPQQRQDQHPQNTLMHPASAAGPPIVATPPAYSAQY
VAYSPQQFPNQPLVQHVPHYQSQHPHVYSPVIQGNTRMMAPPTHAQPGLVSSTAAQYGAH
EQTHAMYACPKLPYNKETGPSFYFAISTGSLAQQYAHPNATLHPHTPHPQPSATPTGQQQ
NQHSGSHTAPSPVQHHQHQAAQALHLANPQQQPAIYHAGLAPTPPSMTPGSNTQSPQNSF
PAAQQTVFTIHPSHVQPAYTNPPHMAHVPQAHVQSGMVPSHPTAHAPMMLMTTQPPGGPQ
AAIAQSALQPIPVSTTAHFPYMTHPSVQAHHQQQL
NT seq
3168 nt
NT seq
+upstream
nt +downstream
nt
atgaggatggttcatatacttacatcagttgttggatccaaatgtgaagttcaagtgaaa
aatggaggtgtatatgaaggagtttttaaaacatatagtcctaagtgtgatttagtgctc
gatgctgctcataagaaaaccacagattccagccctgggccaaagcgtgaagatatcgtg
gagaggattttgttcaagtgttcagactttgtagtagtacagttcaaagacatggattcc
aattatgccagaagagttccttcagaaacagatgcttttactgattcagctatcagtgct
aaagtaaatggcgaacacaaagagaaggaccttgaaccatgggatggaggtgaaactgct
accactgaagagtttgaggctttagagactgatgtttctaatggatgggatccgaatgat
atgtttcgatacaatgaagaaaattacggtgtagtttccacctatgatagcagtttgtca
tcatatacggtaccattagaaagagataactcagaagaatttttaaaacgggaagcacga
gcaaaccagttagctgaagaaattgaatcaagtgctcaatacaaagctcgggtagccctt
gaaaatgatgatagaagcgaagaagaaaaatatactgctgttcagagaaatgccagtgaa
cgtgaggggcacagcctcaacactagagaaagcaagtacattccacctggacaaagaacc
cgagatgtcatgacttggggaagtggtagacaaaattcaccaaggatgggccagcctgca
tccggtcccaccccgtccagatctggatctcatacttcagagtttaacctgaattctgca
gcagaccaaagagtcgttaatggaggtgttccctggccatcgccttgcccatctccttcc
tctcgcccaccttctcgctaccagtcaggtcccaactctcttccacctcgggcagccacc
cctacaaggccgccctccaggcccccctcgaggccatccagacccccgtctcacccctct
gctcatggttctccagctcctgtctctactatgcctaaacgcatgtcttcagaaggaccg
ccaaggatgtcgccaaaggcccaaagacaccctcgtggtcaccgagtttctactgggagg
ggctcaatctccagtggtttagaatttgtttcccataatgcaccaggcgaagtatctgct
cctcctgtagcacgcagtagcccctcaggaggaacatggtcatcagtggtcagtggggtt
ccaagattatctccgaaaacacacagaccgaggtctccaaggcaaaacaatattgcaaat
actcctcctggtccaattctctcttctccccaagctgggactgtgcccacagaatctgtt
gctgtgcctgtgccagctgcatctcctacacctgccaatcttgcttccaaccgagcagtt
accccatctagtgacgctaaagattctaggcttcaagatcagaggcaaaattcaccagct
ggaaacaaagaaaatattaagccgagtgagacctcgccaagctttgttaaagcagaaaat
aaaggtatatcacccattgtttcagaacatagaaaacaaatcgacgatttaaagaaattt
aagaatgattttaggttacagccgagttccacccctgacagtgtggatcacctgctcaac
aaaaacagagaaggagaaaagcctagagatatgatcaaagaccagcctgaacccagctct
aaggacatcctcctggagaatatcagtgctggctgcccaagcagcagcagcaagccaggc
agcccttgcatttctccatcagccagtgggagctctgatcagaagagaggtccagaggtt
acttcccaaggtgtgcaaaccgccagcccggggagtaaacatgacaaggaggatcaagaa
gacaaaaaagatgcagccgagcaagttaggaaatctacattgaatcccaatgcgaaggag
ttcaatccacgttcttttgctcagccaaagccttcaacaactcctacttcccctcgtcct
caagctcagccaagcccttctatggtgggtcatcagcagccaactccggtatatacccag
ccagtttgttttgcaccaaatatgatgtacccagttccagtgagcccaggcgtgcagcct
ctgtatcctatacctatgacgcctatgccagtgaaccaagccaagacatatagagcaggt
aaagtaccaaatatgccccaacagcggcaagatcagcacccccagaacaccctgatgcac
cctgcctcagctgcaggcccaccgatcgtggccacgccgccagcctactcagcacaatat
gtggcctacagccctcagcaatttcccaatcagcctcttgttcagcatgtgccacattat
caatctcagcatcctcatgtctatagtcctgtgatacagggtaatactagaatgatggcc
ccgccaacccatgcccagcctggtttagtatcctccacagcagctcagtatggtgctcat
gagcagacacatgcgatgtatgcatgtcccaaattaccatacaacaaggagacaggccct
tctttctactttgccatttctactggttcccttgctcagcagtatgctcatcctaatgct
accctgcacccacatactccacatcctcagccttctgccacccctactggacaacaacag
aaccaacattcgggaagccacactgcacctagccctgtgcagcaccatcagcaccaagct
gcgcaggcccttcatctggcaaaccctcagcagcagccggccatttaccatgccggtctg
gcaccgaccccaccttccatgacaccgggctcaaatacacaatctccacaaaatagtttc
ccagcagcacaacaaacagtctttacgattcacccctctcatgtccagcctgcatatacc
aacccaccccacatggcccacgtacctcaggctcatgtacagtcaggaatggttccttct
catccaactgctcatgctccaatgatgctaatgacgacccagccacctggcggtccccag
gccgccatcgctcaaagtgcactacagcccattccagtctcgacaacagcgcatttccct
tatatgacgcacccttcagtacaagcccaccaccaacagcagttgtaa
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