Sarcophilus harrisii (Tasmanian devil): 100919645
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Entry
100919645 CDS
T02286
Symbol
MSH6
Name
(RefSeq) DNA mismatch repair protein Msh6
KO
K08737
DNA mismatch repair protein MSH6
Organism
shr
Sarcophilus harrisii (Tasmanian devil)
Pathway
shr01524
Platinum drug resistance
shr03430
Mismatch repair
shr05200
Pathways in cancer
shr05210
Colorectal cancer
Brite
KEGG Orthology (KO) [BR:
shr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
100919645 (MSH6)
09160 Human Diseases
09161 Cancer: overview
05200 Pathways in cancer
100919645 (MSH6)
09162 Cancer: specific types
05210 Colorectal cancer
100919645 (MSH6)
09176 Drug resistance: antineoplastic
01524 Platinum drug resistance
100919645 (MSH6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
shr03400
]
100919645 (MSH6)
DNA repair and recombination proteins [BR:
shr03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
100919645 (MSH6)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_I
PWWP
MutS_IV
MutS_II
MUM1-like_PWWP
Motif
Other DBs
NCBI-GeneID:
100919645
NCBI-ProteinID:
XP_031806307
Ensembl:
ENSSHAG00000008029
UniProt:
G3W1H2
LinkDB
All DBs
Position
2:88520669..88555149
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AA seq
1399 aa
AA seq
DB search
MSRQSTLFSFFPKSPALCSNNKAAAIAADGSGAGAGAGASGIEGVGRAGVSGASSACGDA
ARSEEARPSPDPAAASGPGPHVPSPRSSSGVAPLPREIKLNGGPRRRPTGVPTPAPAPAA
AAPPASSCDFSPGDLVWAKMEGYPWWPCLVYNHPTEGTFIRERGKTFRVHVQFFDDNPVR
GWVNKRLVKPYTGSKCKEAQKGGPFYTAKPEILRAMQLADDAISIEKNKRLELAVCDEPS
DPDEEEMEVALASASDNSGEDLESEEEVRPKRQMAKRSTARNKKMRVVSDSESDIGGSDV
EFKPDTKEEGSSDEASSGMGESDSDMDSPVKAAPKRKRGTAVNSSLKRKSLGGCTSNVPK
RVVGVSSETKNTLNAFSAPQNFEAQAQVSGGGDGSCGSTQWYHETLEWLKEGKRKDACRR
RPDHPDYDPNTVHVPEDFLNTCTPGMRRWWQIKSQNFDLVIFYKVGKFYELYHMDAIIGV
NELGLVFMKGNWAHSGFPEIAFGRYSDSLVQKGYKVARVEQTETPEMMEARCRKLTHISR
FDRVVRREICRIITKGTQTYSVLDGEPSESNNKYLLCVKEKEEEASGHMRLYGVCFIDTS
VGKFYMGQFSDDRHCSRFRTLVAHYTPAQILFEKGNLSAETRKVLKVSLSSSIQESLTPG
SQFWDAAKTLRTLLEEGYFKEKLNVADGVVLPPVLKSMTSESDSIGLTPNEKSELALSAL
GGCVFYLKKCLIDYELLSMANFEEYIPVDADMVKAVKPGAIFGKRDCRMVLDAVTLSNLE
ILQNAVNGSTEGTLLERIDSCCTPFGKRLLKQWLCAPLCNPSSINDRLDAMEDLMAVPDK
ISEVVDLLKKLPDLERLLNKIHSVGSPLKSQKHPDSRAIMYEETTYSKKKIVDFLSALEG
FKVMCKIVGIMEEVVGNFKSKILKQVITLRTQNSGGRFPELTTELNRWDTAFDHEKARKT
GIITPKTGFDSDYDQALVDIKDNEQSLLDYLEKQRKRIGCRSIVYWGVGKNRYQLEIPES
FTLHDLPGEYELKSTKKGCKRYWTKDIEKKLADLMNAEERRDVSLKDCMRRLFFNFDKNY
RDWQTAVECIAVFDVLLCLANYSRGGEGPMCRPVILVPDEETRPFLKLKGSRHPCVTNNF
FGDDFIPNDIMIGCKEEDSEDSTWDAYCVLVTGPNMGGKSTLMRQAGLLLIMAQMGCYVP
AEVCSFTPVDRVFTRLGASDRIMSGESTFFVEMNETASILQHATEHSLVLMDELGRGTAT
FDGTAIANAVVKELAETIKCRTLFSTHYHSLVEDYSQNVAVCLGHMACMVENECEDPSQE
TITFLYKFTKGACPKSYGFNAARLACLPEEIIQKGHRKAKEFEKMTQSLRLFREVCLALE
NSAADVQAIHKLLTLIKEI
NT seq
4200 nt
NT seq
+upstream
nt +downstream
nt
atgtcgcgacagagcaccctattcagcttcttccccaagagcccggcgctgtgcagcaac
aacaaggccgccgccattgctgcggatggaagcggcgctggggctggagcgggggcttcg
gggattgagggggtggggcgggccggagtctccggggcctcgtcggcttgcggagacgcg
gcccggagcgaagaagcccgcccgagtcctgaccctgctgctgcctcaggccccggccct
cacgtccccagcccccgctccagctccggggtcgccccgctgccccgagagataaaactg
aatggagggccgcgccggcgaccgactggagtgccgaccccggctccagccccagccgcg
gctgctcctccagccagctcttgtgacttctctcctggtgatttggtttgggccaagatg
gaaggttacccctggtggccttgccttgtgtataatcatcccactgaaggaacattcatc
agagaaaggggaaaaactttccgtgttcatgtacaattttttgatgacaatccagtgagg
ggctgggttaacaaaaggcttgtaaagccctatacaggttcaaaatgtaaggaagcccag
aaaggaggtcctttttatactgcaaagcctgaaatactcagagcaatgcaactggcagat
gatgccataagtatagagaagaataagcggcttgaattagcagtatgtgatgagccttca
gatccagatgaggaggagatggaggtggctctagcttctgcatcagataatagtggagag
gatctagaaagtgaagaggaagtgagacccaagaggcagatggctaagcgtagcacagcc
cggaacaaaaaaatgagagttgtttcagactcggagagtgacattggtggctctgatgta
gaatttaagccagataccaaggaggaagggagcagtgatgaagcaagcagtggaatgggt
gaaagtgatagtgacatggacagtcctgtcaaagctgccccaaaacggaagagaggaact
gctgtcaacagctccctcaagaggaaaagcttgggaggttgtacttctaatgtacccaaa
cgagtagtaggagtttcttcagaaactaagaacactttgaatgctttctctgctccacag
aactttgaggcccaagcccaagtcagtggaggtggtgatgggagctgtggctctactcag
tggtaccatgaaacactagaatggttaaaggagggaaagaggaaagatgcatgcaggagg
cgtccagatcatcctgattatgacccaaacactgttcatgttcctgaggatttccttaat
acctgtactccaggaatgagaaggtggtggcaaatcaagtctcagaactttgacctagta
atcttctataaagtagggaagttctatgaactataccacatggatgcaatcattggggtc
aatgagctggggctagtgtttatgaaaggcaattgggcccattcaggcttcccagaaatt
gcatttggtagatactctgattccctggttcagaagggttacaaagttgctcgagttgag
cagacagagactcctgaaatgatggaagctcgctgtcgaaagttgactcatatatccaga
tttgatagagtggtgcggagagaaatatgcagaattattaccaagggaacacagacttat
agtgtgctggatggtgaaccttctgaaagcaacaataagtatttgctatgtgttaaagaa
aaagaggaggaagcttctggtcacatgcgtttatatggtgtttgctttatcgacacctcc
gtgggcaagttttatatgggtcaattttcagatgaccgtcattgctcccgatttaggact
ctggtggcacattatactcctgcacaaatactgtttgagaaaggaaatctctctgctgaa
acaaggaaggttctgaaggtgtctctatcttcttccattcaagaaagtctgactccaggc
tctcagttttgggatgcagccaaaaccttgagaacactccttgaagaaggatactttaaa
gaaaagctaaatgtggctgatggggtagtattaccccctgtgcttaaaagcatgacatca
gagtctgactccattggcttaacacctaatgagaagagtgaactggcattgtctgctttg
ggtggttgtgtcttctacctcaaaaaatgccttatcgattatgagcttttgtctatggcc
aactttgaagaatacattcctgttgatgctgatatggtaaaagctgtaaagcctggtgcc
atctttggtaagagagattgtcgaatggtactagatgctgtgaccctcagcaacctggag
attctccagaatgcagtaaatggctccactgaagggacgctgttagagaggattgatagt
tgctgtactccctttgggaagcggctcctaaaacagtggctttgtgctccactttgtaac
ccatcctcaatcaatgaccgtttagatgcaatggaagatctcatggctgtgcctgacaag
attagtgaagtagttgaccttctgaagaagcttccagaccttgagagactgttgaacaag
attcatagtgttggctctccactaaagagtcagaagcacccagacagcagagccataatg
tatgaagaaaccacttacagcaaaaaaaagattgttgatttcttgtctgctctggaagga
ttcaaagtgatgtgcaagattgttggaattatggaagaagtagtaggtaatttcaagtct
aaaatccttaagcaagttattacactccggactcaaaattcggggggtcgtttccctgag
ttgaccacagaattgaatcgatgggatacagcctttgaccatgaaaaagctcgaaagact
ggaattattactcctaaaacaggatttgattctgattatgaccaagcattggttgatatt
aaggacaatgagcagagccttttagactatttagagaaacagcgtaaacggattggctgc
aggtccatagtctattggggtgttggcaaaaatcgttaccaattggaaattccagaaagt
ttcacattgcatgatttgccaggggaatatgaactaaagtccaccaagaagggctgtaaa
cgatactggacaaaggacattgagaagaagcttgctgatttgatgaatgctgaagagcgg
agagatgtatcactgaaggattgtatgaggagactcttctttaattttgataaaaattac
agggactggcagactgctgtggagtgcattgcagtgttcgatgtcttactatgcttggcc
aactatagtcgaggtggtgaaggtcccatgtgtcgtccagtaatcctagtaccagacgag
gagactcgaccctttttaaagcttaaaggatcccgacatccatgtgttacaaataacttt
tttggtgatgattttattcctaatgacattatgataggctgtaaggaagaagattcggaa
gatagtacctgggatgcttattgtgtgctggttactggaccaaatatggggggcaaatca
accctcatgagacaggctggtcttttgcttataatggctcagatgggctgttatgttcct
gctgaagtttgtagtttcacaccagttgatagagtgttcactagattaggtgcttcagac
agaataatgtcaggtgaaagtaccttttttgttgaaatgaatgagactgccagcatacta
cagcatgcaacagaacattccttggtgctcatggatgaactaggtagaggcactgcaact
tttgatggtacagctatagcaaatgcagttgttaaagaacttgccgagaccataaagtgt
cgtactttattttctacacactaccattcattagtagaggattactcccaaaatgttgct
gtgtgcctaggacacatggcatgcatggttgaaaatgaatgtgaagacccaagccaggaa
accattaccttcctctataaatttactaaaggtgcttgtcctaaaagctatggcttcaat
gcagcaaggcttgcctgtcttcctgaagagattattcagaaaggccataggaaagcaaaa
gaatttgagaagatgacccaatcattgagactatttcgggaagtttgtttggctcttgaa
aattcagctgcagatgtccaggctattcacaagttgttgactttgatcaaggaaatataa
DBGET
integrated database retrieval system