Sarcophilus harrisii (Tasmanian devil): 100919755
Help
Entry
100919755 CDS
T02286
Symbol
SCN9A
Name
(RefSeq) sodium channel protein type 9 subunit alpha isoform X1
KO
K04841
voltage-gated sodium channel type IX alpha
Organism
shr
Sarcophilus harrisii (Tasmanian devil)
Pathway
shr04742
Taste transduction
Brite
KEGG Orthology (KO) [BR:
shr00001
]
09150 Organismal Systems
09157 Sensory system
04742 Taste transduction
100919755 (SCN9A)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
shr04040
]
100919755 (SCN9A)
Ion channels [BR:
shr04040
]
Voltage-gated cation channels
Sodium channel, voltage-gated (Nav)
100919755 (SCN9A)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ion_trans
Na_trans_cytopl
Na_trans_assoc
IQ_SCN5A_C
PKD_channel
GPHH
IQ
ATP-synt_B
Dynamin-like_hel_bact
Motif
Other DBs
NCBI-GeneID:
100919755
NCBI-ProteinID:
XP_031816394
Ensembl:
ENSSHAG00000014022
LinkDB
All DBs
Position
3:407781329..407880326
Genome browser
AA seq
1988 aa
AA seq
DB search
MAMLPPPGPESFVYFTRQSLALIEQRISEGKSKEPKEEKTDEEEEGPKPSSDLEAGKQLP
FIYGDIPPGMVSEPLEDMDPFYMDKKTFIVLNKGKTIFRFSATPALYILSPFSLIRRISI
KILVHSLFSMLIMCTILTNCIFMTMSNPPDWTKNVEYTFTGIYTFESLVKILARGFCIGP
FTFLRDPWNWLDFIVICFAYVTEFVDLGNVSALRTFRVLRALKTISVIPGLKTIVGALIQ
SVKKLSDVMILTLFCLSVFALIGLQLFMGNLRHKCVRWPLEDENITLENISVLCEAENYR
SYFYHVEGQKDALLCGNGTDAGQCPEGYMCVKACANPDYGYTSFDTFSWAFLALFRLMTQ
DFWENLYQQTLRAAGKTYMIFFVVVIFLGSFYLINLILAVVAMAYEEQNQATIEEARQKE
LEFQQMLERLKKEQEEAEAIVAAADEYTSIGGGKVMGLSESSSETSKLSSKSAKERRNRR
KKKNQKKQSNGDEKKDNEKLSKSESDESIKKKSCHLGVEGHRLPQGKRMSSPNQSPLSIR
GSLRSTRPSSRTSIFSFRGQGKDVGSETDFADDEHSIFGDNESRRGSLFVPHGHRERRSS
NISQTSRSPRMLPVNGKMHSAVDCNGVVSLVDGPTALMLPNGQLLPEVIIDKATSDDSGG
TTKIDAPKRASSSFLISMDMLDDPTVRQRALSIASIITNTMEELEESRQKCPPWWYKFAN
TFLIWNCSPRWLKFKKFIHLIVMDPFVDLAITICIVLNTLFMAMEHYPMTAGFKNVLYVG
NLVFTGIFTAEMVLKLIALDPYEYFQVGWNIFDSVIVTLSLVELLLNDVEGLSVLRSFRL
LRVFKLAKSWPTLNMLIKIIGNSVGALGNLTLVLAIIVFIFAVVGMQLFGKSYKECVCKI
NSDCTLPRWHMNDFFHSFLIVFRVLCGEWIETMWDCMEVAGQSMCLIVYMMVMVIGNLVV
LNLFLALLLSSFSSDNLTAIEEDTDANNLQLAVVRIKKGINYVKKNMYEFIQKAFIKKPK
ISNEIRRVDNQNIKKENYIPNRTLAEMSKDQYFHPDRDGTSGFDSSMERYMMDESDYQSV
IHNPSLTVTVPIALGESDFENANTEEFSSESDIEGSKERVHRSSSSEGSTIDNAIPDDRE
EEIAEPENSDEPEACFTDGCVRRFPCCQVSIESGKGKVWWNIRKTCYKIVEHNWFESFIV
LMILLSSGALAFEDIYIEKRKTIKTVLEYADKIFTYVFIMEMLLKWVAYGYKTYFTNAWC
WLDFLIVDVSIITLVASTLGYSDLGPIKSLRTLRALRPLRALSRFEGMRVVVNALLGAIP
SIMNVLLVCLIFWLIFSIMGVNLFAGKFYECINTTDGERFPISMVENHEQCEQLMNSSHD
VRWKNVKVNFDNVGIGYLSLLQVATFKGWMDIMYAAVDSVDIGHQPQYEANLYMYLYFVI
FIIFGSFFTLNLFIGVIIDNFNQQKKKLGGQDIFMTEEQKKYYNAMKKLGSKKPQKPIPR
PGNKFQGCIFDLVTKQAFDITIMVLICLNMVTMMVEKDEQSQTMTYVLYWINMVFIILFT
GECVLKLISLRHYYFTIGWNIFDFVVVILSIVGMFLADMIEKYFVSPTLFRVIRLARIGR
ILRLIKGAKGIRTLLFALMMSLPALFNIGLLLFLVMFIYAIFGMSNFAYVKKEAGINDMF
NFETFGNSMICLFQITTSAGWDGLLAPILNSGPPDCDPEKVHPGSSVKGDCGNSSVGIFY
FVSYIIISFLVVVNMYIAVILENFSVATEESAEPLSEDDFEMFYEVWEKFDPDATQFIEY
SKLSDFAASLDPPLHIAKPNKVQLIAMDLPMVNGDRIHCLDILFAFTKRVLGESEEMDTL
RLQMEERFVAANPSKVSYEPITTTLKRKQEEVSATIIQRAFRRYRLRQNVKNISGIYNKG
DERVDLVMKEDIVFGKGNENSTPEKMDDVTPSTTSPPSYDSVTKRDKEKYEKDKTEKEDK
DKDGREDE
NT seq
5967 nt
NT seq
+upstream
nt +downstream
nt
atggcaatgttgcctcccccaggacctgaaagttttgtctacttcaccagacagtctctt
gcactcattgaacaacgcatttccgaaggaaaatctaaggaacctaaagaggagaaaaca
gatgaggaagaagaaggcccaaagccaagtagtgacttggaagctggtaaacagcttcca
tttatttatggagacattcctccagggatggtgtcagagcccttggaagatatggaccca
ttctacatggataaaaaaacattcatagtattgaataaagggaaaacaattttccgattc
agtgccactcctgccttgtacattttatcacctttcagcctgattagaagaatttctatt
aagattttggttcattctttattcagcatgctcatcatgtgtactatcctgactaattgt
atatttatgacaatgagcaaccctccagattggacaaagaatgttgagtacactttcacg
ggaatatatacttttgaatcgctggtaaaaattcttgcaagaggcttctgtatagggcca
tttacttttctccgtgatccctggaactggcttgacttcattgtcatttgttttgcatat
gtgacagagtttgtggatctgggcaacgtctcagcgttgagaacattcagagttctccga
gcgttgaaaacaatttcagtcattccaggactgaagactattgtgggggccctgatccag
tcagtgaagaagctttctgatgtcatgatcctgacattgttttgtctcagtgtatttgct
ctcattgggctgcagctgtttatgggcaacctgaggcataaatgtgtacggtggccttta
gaagatgaaaatataactctagaaaatataagtgttctttgtgaagcagaaaattacaga
agctatttctatcatgtggaaggacaaaaggatgctcttctttgtggtaatggcactgat
gcaggccagtgtccagaaggatatatgtgtgtgaaagcctgtgccaatccagattatggc
tacacaagttttgacactttcagttgggccttcttggctttatttcgattaatgactcaa
gatttctgggaaaatctttaccaacagactttacgtgctgctgggaagacttacatgata
ttttttgttgtggtgattttcttgggctcattttatttgataaacctgatcttggctgta
gttgccatggcctatgaagaacagaaccaggcaaccattgaagaagctcggcaaaaagaa
ttggaatttcagcaaatgttagagcggcttaaaaaagagcaagaggaagcagaggcaata
gtagcagcagcagatgagtatacaagtattggtggaggcaaagttatgggactttcagaa
agttcttctgaaacatccaaattgagctcaaagagtgctaaagaaaggcgtaaccgaagg
aaaaaaaagaatcagaaaaaacagtccaatggagacgaaaagaaagataatgaaaaatta
tctaaatctgaatcagatgagagtatcaagaagaaaagttgtcaccttggtgttgaagga
catagactacctcaaggaaagaggatgtcttctccaaatcagtctcctcttagcatacgt
ggctccttgcgttctacaagacccagcagtagaacaagtatttttagcttcaggggtcag
ggaaaggatgttggatctgagactgattttgcagatgatgagcacagtatttttggagac
aacgaaagcagaaggggctctttgtttgtgccccatgggcacagagaacgacggagtagt
aacatcagccaaaccagtagatctcctcggatgcttccagtgaatggcaagatgcacagt
gctgtggattgtaatggtgtggtgtccctggttgatggtcctacagccctcatgctgcct
aatggacagcttttgccagaggtgataatagataaggcaacttctgatgacagtggtggg
acaactaaaatagacgcacccaaaagagcatcaagttctttcctcatttctatggatatg
ttggatgatcctactgtcagacaaagggcactgagcatagccagcataataacaaacaca
atggaagaacttgaagaatccagacaaaaatgtccaccttggtggtataagtttgctaat
acttttctcatctggaattgctcaccacgttggttgaaattcaaaaagtttatccattta
attgtaatggatccatttgttgatcttgccattactatttgcatagttttaaatacacta
tttatggcgatggaacattatccaatgactgcaggatttaaaaatgtgctttatgtggga
aacctggtattcactgggattttcactgcagaaatggttttaaagctaattgctctggat
ccatatgagtatttccaagtaggctggaacatttttgatagtgtcatcgtgactcttagt
ttagtggagcttcttctaaatgatgtggaaggattgtctgttctccgttcattcagattg
ctacgagttttcaagttggcaaaatcttggccaacattgaatatgctgataaaaattatt
ggcaactcagtgggggctctaggaaacctgaccttggtgttggccatcattgtctttatt
tttgccgtggtcggtatgcagctctttggcaagagttataaagaatgtgtctgcaagatc
aacagtgattgcacactgccacgctggcacatgaatgacttttttcactccttcctaatt
gtattccgagtgctatgtggagaatggatagagaccatgtgggattgtatggaggttgca
ggtcaatctatgtgcctcattgtttacatgatggtcatggtgattggaaacctagtggtc
ctgaacctttttctggctttgttactgagctcatttagttcagataatcttacagcaatt
gaagaagatactgatgcaaataatcttcagcttgcagtggtgagaatcaaaaagggaata
aattatgtgaaaaaaaacatgtatgaattcattcaaaaagcattcattaaaaagccaaag
atttcaaacgagatcagaagagtggataatcaaaatattaaaaaggaaaattacataccc
aatcgtactcttgctgaaatgagcaaagatcagtattttcacccagatagagatgggacc
agtggttttgacagcagcatggaaagatacatgatggatgagagtgactatcaatctgtc
attcacaatcctagtctcactgtcacagtacctattgccctgggagaatctgattttgaa
aatgcaaatactgaagaatttagcagtgaatcagatattgagggcagcaaagagcgagta
caccgatctagttcctctgaaggcagtacaattgataatgctatccctgatgacagagaa
gaagaaatagctgaacctgaaaattcagatgaaccagaggcctgttttacagatggttgt
gtacgaaggttcccatgctgtcaagtcagcatagaatctggcaaaggaaaagtttggtgg
aacataaggaaaacctgctacaaaatagtagaacacaactggttcgagagtttcattgtt
ctcatgatccttctcagcagtggtgccttggcttttgaagatatatacattgaaaagcga
aagaccattaagactgtattggaatatgctgacaagatcttcacttatgtcttcattatg
gaaatgcttctaaaatgggtagcatatggttataaaacatattttactaatgcttggtgc
tggctggacttcttgattgttgatgtatctataattacacttgtagccagtactcttgga
tattcagaccttggtcccattaaatccctccggacattaagagctttaagaccactccgt
gctttatctcgatttgaaggaatgagggtggtggtgaatgcacttttaggagcaattcca
tccattatgaatgtacttctggtctgcctcatattctggctaatttttagcattatggga
gtaaatttgtttgctggcaagttctatgaatgcattaacaccacagacggcgagaggttt
cctataagcatggttgagaatcatgagcagtgtgaacaactcatgaatagtagccatgat
gtccggtggaaaaatgtgaaagtgaactttgataatgttggaattggttacctttctctg
cttcaagttgctacatttaaaggatggatggatattatgtatgcggctgtcgattcagtt
gatataggtcatcagcctcaatatgaagcaaacctctacatgtatctttattttgtcatc
tttatcatctttgggtcattcttcactttgaatctcttcattggtgtcatcatagataat
ttcaatcaacagaaaaagaagcttggaggccaagatatctttatgacagaagagcagaag
aaatattataatgcaatgaaaaagctgggatccaagaaaccacaaaaaccaatacccagg
ccagggaacaaattccaaggatgtatatttgatttggtgacaaagcaagcttttgatatt
acaatcatggtacttatttgtcttaacatggtgaccatgatggtagaaaaagatgaacaa
agtcaaaccatgacttatgttttatattggataaatatggtttttattatcttattcact
ggagaatgtgtactgaagctgatttcccttcgccattattatttcactattggatggaac
atttttgattttgtggtggtcattctgtctatcgtaggtatgtttctagctgatatgata
gaaaaatatttcgtatctcctaccctgtttcgtgtaatccggcttgccagaattggccga
atccttcgtctcattaaaggggcaaaagggatccgcacactgctctttgctttgatgatg
tcccttcctgctctatttaacattgggctcctgctttttctagtcatgtttatctatgcc
atctttggaatgtccaattttgcctatgttaaaaaggaagctggaattaatgacatgttc
aactttgaaacctttggcaacagcatgatctgcctcttccaaattaccacatctgctggt
tgggatggtttgcttgcacccattcttaacagcggaccaccagactgtgaccctgaaaaa
gttcatcctggaagctcagtcaaaggcgattgtggcaattcctctgttgggattttctat
tttgtcagctacatcatcatctcattcctggtggttgtgaacatgtacattgctgtaatc
ctggaaaatttcagtgttgcaactgaagaaagtgcagagccattaagtgaggacgacttt
gagatgttctatgaagtttgggaaaagtttgatcctgatgctacccagttcatagaatac
agtaaactctctgattttgcagcttcattagatcctcctcttcatatagcaaaaccaaac
aaagttcagctcatagccatggatctacccatggtaaatggggaccgaattcactgcctt
gacatcttatttgcatttacaaaacgtgtgttgggtgaaagtgaagagatggacaccctt
cgtttacaaatggaagagcgttttgtggctgcaaatccttctaaagtttcttatgaaccc
attaccactacactaaaacgaaaacaagaggaagtatcagctacaatcattcagcgcgca
tttagacgttaccgcttaagacaaaatgtcaaaaatatatcaggcatatataacaaaggt
gatgaaagagttgatctggttatgaaagaagatattgtttttggtaagggtaatgaaaac
tcaactccagagaaaatggatgatgtgactccttccactacttctccaccttcttatgac
agtgtaacaaagagagacaaagagaaatatgaaaaagacaaaacagaaaaggaagataaa
gataaagatggcagggaagatgagtga
DBGET
integrated database retrieval system
