Sarcophilus harrisii (Tasmanian devil): 100919808
Help
Entry
100919808 CDS
T02286
Symbol
IGHMBP2
Name
(RefSeq) DNA-binding protein SMUBP-2
KO
K19036
ATP-dependent RNA/DNA helicase IGHMBP2 [EC:
5.6.2.5
5.6.2.3
]
Organism
shr
Sarcophilus harrisii (Tasmanian devil)
Brite
KEGG Orthology (KO) [BR:
shr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
shr03009
]
100919808 (IGHMBP2)
03012 Translation factors [BR:
shr03012
]
100919808 (IGHMBP2)
Enzymes [BR:
shr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
100919808 (IGHMBP2)
5.6.2.5 RNA 5'-3' helicase
100919808 (IGHMBP2)
Ribosome biogenesis [BR:
shr03009
]
Eukaryotic type
Other ribosome biogenesis factors
100919808 (IGHMBP2)
Translation factors [BR:
shr03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
100919808 (IGHMBP2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_11
AAA_12
SMUBP-2_HCS1_1B
R3H
AAA_30
AAA_19
zf-AN1
AAA_22
nSTAND3
AAA_16
DEAD
ResIII
AAA_25
UvrD-helicase
SLFN-g3_helicase
Flavi_DEAD
IstB_IS21
AAA
DnaB_C
PhoH
UvrD_C_2
AAA_33
RNA12
NTPase_1
AAA_18
T2SSE
bpMoxR
ATPase
Motif
Other DBs
NCBI-GeneID:
100919808
NCBI-ProteinID:
XP_031799958
Ensembl:
ENSSHAG00000001585
LinkDB
All DBs
Position
6:complement(239289928..239304796)
Genome browser
AA seq
999 aa
AA seq
DB search
MESVESFVTRQLELLEQEREAEVQEKRAWQEGVSPKELQRRGVCLLKLQVVSQRTGLYGR
LLVVLEPRTWEPAAALPSNSFGPGDIVGLYESAPDSAALATGVLTRVTQRAVTVALDEVQ
DGAVVLDPGGLYRLLRLANDVTYKRLKKALLALNQHRSGPAAPLIDVLLCASEPSSPVPP
QTLTFCNSNLDTSQKEAVAFALAQKELAIIHGPPGTGKTTTVLEVVLQAVHRGLKVLCCA
PSNVAVDNLVERLAAQKQKVLRLGHPARLLDAIQHHCLDAVLARSDQAQIVADIRKDIDR
VKGMKTLDKRDKSYGRNELKLLRKELREREEAAMLRSLSWADVILATNTGASPDGPLKLL
PDNYFDVVVIDECAQALEASCWIPLLKARKCVLAGDHQQLPPTIVSHQAASGGLALSLME
RLIAKHGDKVVRMLTVQYRMHQAIMQWASDELYHGQLTAHSSVAGHLLKDLPGVVPTEET
SIPLLLIDTAGCGLFELEDEDEQSRGNPGEVRLVSLHVQALVDAGVRVGDMAVITPYNLQ
VDLLRQQLSPKYPELEIKSVDGFQGREKEAVILSFVRSNRKGEVGFLAEDRRINVAVTRA
RRHVAVVCDSRTIGSDAFLKRLVDYFTLRGEVRTAFEYLDDIVPDNYCHEGPQSGQAGRR
PGDPARPGPRPRPEGRKARGGHKSGRSGTPGQPPEGPRVNGEGRPGAPEGAVDSFRTRIV
DFLESSETLLEFPASLNSHDRMLVHQLAEEHGLKHESVGEGKKRYISVRKKGVPAVPTPT
PAAAPAAAPSATGPSPTSTESEGQGLQCPGPGRPGLSPGEQDPPGSPGDSRSQKAPHRQR
EETGQAGPGQRARERQDPAGSGAPKVSGRKKGKGRKGPTGGDGAAEEDFDALISAAIKAD
STCGFSGCKASVVTLGQLCPHCAHRFCLRHHIPEVHGCGEKARAQARQRISREGVLYAGS
GMKAKGPDPVKRVHLQRRLDQKLVELSSQRKSKKKDKDK
NT seq
3000 nt
NT seq
+upstream
nt +downstream
nt
atggagtctgtggagagttttgtgactcggcagctggagctgctggagcaggagcgagag
gcggaggtgcaggagaagagggcctggcaggagggcgtgtcccccaaggagctgcagcgc
cgcggcgtgtgcctgctgaagctgcaggtggtgagccagcgcacgggcctctacggacgc
ctgctcgtcgtcttggagccccggacgtgggagcccgcggccgccctgccctccaacagc
ttcgggcccggtgacatcgtggggctctacgagagtgctccggactccgccgcgctcgcc
accggcgtcctgacgcgcgtcacgcagcgggccgtgaccgtggctttggatgaagtccag
gatggggcggtggtcttggaccccggcggcctttaccggctgctccggctggccaacgac
gtcacctacaagcgactcaaaaaagccctcctggccctgaaccagcaccgctcgggcccg
gctgcgcccctcatcgacgtcctcctctgcgcttctgagccaagcagccccgtcccacca
caaacgctgacgttctgcaacagcaatctggacacgtcacagaaagaggccgtggccttt
gccctggcccagaaagagctggccatcatccacggcccccccggcactgggaagaccacg
accgtgctggaggtggtgctgcaggccgtgcaccggggcctgaaggtcctgtgctgcgcc
ccttccaacgtcgccgtggacaacctggtagagagactggccgcgcagaagcagaaggtc
ctccgcctcgggcaccccgcgcgcctcctggacgccatccagcaccactgcctcgatgcc
gtcctggcccgcagtgaccaggcccagatcgtggccgatatccgcaaggacattgaccgg
gtgaagggcatgaagaccctggacaagagggacaagagctatggccgcaacgagctgaag
ctgctgaggaaggagctgagggagagggaggaagccgccatgctcaggagcctctcctgg
gccgacgtcatcctggccacaaacacaggtgcctcccccgacggccccctgaagctgctc
cccgacaactactttgacgtggtggtgatcgacgagtgcgcccaggccctggaggccagc
tgttggatccccctgctgaaggccaggaagtgcgtcctggccggagaccaccagcagctg
cctcccaccatcgtgtcccaccaggccgccagcgggggtctggccctcagcctaatggag
cgcctgatcgcgaagcacggggacaaggtggtgaggatgctgacggtccagtaccgcatg
caccaggccatcatgcagtgggcctcggacgaactgtaccacggacagctcactgcccac
tcctctgtggctggccatcttctgaaggatctgccgggggtcgtgcccaccgaggagacg
agcatccccctgctgcttatcgacactgccggctgcggcctgtttgagcttgaggatgag
gatgaacagtccagggggaacccaggtgaggtccgccttgttagtttgcacgtccaggct
ttggtggacgctggcgtccgagtgggtgacatggctgtcatcacgccctacaacctgcag
gtggacctgctcaggcagcagctttccccaaagtatccggagcttgaaatcaagtcagtc
gatggcttccagggaagagagaaggaggcggtcatcttgtcctttgtgcgatccaaccgg
aaaggtgaggtgggttttctggcggaggaccggaggatcaacgtggcggtcactcgtgcc
cggcgccacgtggccgttgtctgcgactctcggacaatcggcagcgatgccttcttgaag
aggctggtggattatttcactctgagaggcgaagtccgcacggccttcgagtacctcgac
gacatcgtccctgacaactactgccacgaaggcccccagagtggccaggcgggcaggagg
cccggagaccccgcccggcccggcccccgacctcgcccggaaggccggaaggccagaggg
ggccacaagtccggcagaagcgggaccccgggccagccaccagagggccccagagtcaat
ggcgagggtcggcctggggcccccgagggtgccgtggactccttcagaaccaggatcgtg
gactttctggagagcagcgagaccctgctcgagtttcccgcgtccctgaattcccacgac
aggatgctggtccaccagctggccgaggagcacgggctgaagcatgagagtgttggtgaa
gggaagaagaggtacatctctgtgcgcaaaaagggggtccctgctgtccctaccccaact
cccgctgctgcccccgccgctgccccctccgccacggggccgtctccaaccagcacggag
agtgaagggcaggggctccagtgcccgggcccaggacggccgggcctttccccgggtgag
caggacccccccggcagccccggggacagtcgcagtcagaaggcccctcacaggcaaaga
gaagagacggggcaagccgggcccggtcagcgggccagagaacgccaagaccctgctggc
tccggggcgccaaaggtgtcaggaaggaagaagggaaaggggaggaaaggccccacggga
ggagacggcgcagctgaggaagactttgacgccctgatctctgctgccatcaaagccgac
agcacctgtgggttctctgggtgcaaagccagcgtggtgaccctgggccagctgtgcccg
cactgcgcccaccgcttctgcctccgccaccacatccctgaggtgcacgggtgtggcgag
aaggcccgagcgcaggcgcgccagaggatcagcagagaaggggtcctgtatgcgggcagt
ggaatgaaggccaaggggccggaccctgtgaagagggtccatctccagaggaggctggac
cagaagcttgtggagctgagtagccagaggaaaagcaaaaagaaggacaaggacaagtga
DBGET
integrated database retrieval system
