Sarcophilus harrisii (Tasmanian devil): 100920191
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Entry
100920191 CDS
T02286
Symbol
COL8A1
Name
(RefSeq) collagen alpha-1(VIII) chain isoform X1
KO
K23455
collagen type VIII alpha
Organism
shr
Sarcophilus harrisii (Tasmanian devil)
Pathway
shr04974
Protein digestion and absorption
Brite
KEGG Orthology (KO) [BR:
shr00001
]
09150 Organismal Systems
09154 Digestive system
04974 Protein digestion and absorption
100920191 (COL8A1)
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Gene cluster
GFIT
Motif
Pfam:
Collagen
C1q
Motif
Other DBs
NCBI-GeneID:
100920191
NCBI-ProteinID:
XP_003763594
Ensembl:
ENSSHAG00000012024
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All DBs
Position
3:276800136..277016943
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AA seq
740 aa
AA seq
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MAVPLTPLQLLEVVILIHLSFIRSIHGGAYYGIKQLPPQIPAQIPQYQALGQQVPHMALG
KDGLPMGKEMPHMQYGKEYPHLPQYMKEIPQVPRMGKEAAPKKSKEIPLASLRGEQGPRG
EPGPRGPPGPPGLPGHGIPGTKGKPGPQGYPGIGKPGMPGMPGKPGGMGMPGAKGEAGPK
GEIGPMGLPGPQGPPGPHGLPGIGKPGGPGFPGQQGPKGEPGPKGQPGPPGLQGPKGDKG
FGMPGLPGLKGPPGMHGPPGPVGLPGVGKPGVTGFPGPQGPLGKPGLQGEPGPRGPIGVP
GIQGPPGVPGVGKPGQDGIPGRPGFPGGKGEQGLPGVPGPPGLPGVGKPGFPGPKGDRGM
GGLPGALGPQGEKGPIGAPGMGGPPGEPGLPGIPGPMGPPGAIGFPGPKGEGGAVGPQGP
LGPKGEPGLQGFPGKPGFLGEVGPPGMRGLPGPIGPKGEAGHKGLPGIPGAPGLIGPKGE
PGIPGDQGLQGPSGIPGIGGPSGPIGPPGLPGPKGEPGLPGPPGFPGVGKPGVAGLHGPP
GKPGALGPQGQPGLPGPPGPPGPPGPPAVMPPTPPAHGEYLPEMGPGIDGVKTPHAYGGK
KGKNGGVAYEMPAFTAELTTPFPPVGAPVKFDKLLYNGRQNYNPQTGIFTCEVPGVYYFA
YHVHCKGGNVWVALFKNNDPMMYTYDEYKKGFLDQASGSAVLQLRPGDRVFLQMPSEQAA
GLYAGQYVHSSFSGYLLYPM
NT seq
2223 nt
NT seq
+upstream
nt +downstream
nt
atggctgttcccctgacccctcttcagctactggaagtggtgatcctcattcatctcagt
ttcatcaggtccattcatggaggtgcctattatgggatcaaacagcttccacctcaaatc
ccagctcagataccccaataccaggccctgggacaacaagtacctcacatggcattgggc
aaagatggacttcccatgggtaaggagatgccccacatgcagtatggcaaagaataccca
cacctaccccagtatatgaaggaaattccacaggtgcccaggatgggcaaggaggcagct
cccaagaaaagcaaagaaatcccattagccagcttaagaggagagcaaggtccccgtgga
gaacctggcccaagaggaccccctggacccccaggtttaccaggccatgggataccagga
accaaaggaaagccaggcccccaaggctaccctggcattggcaaaccaggtatgcctgga
atgcctggaaagcctggaggcatgggcatgcctggggcaaaaggcgaagctggacccaag
ggggagattggacctatgggcctgcctgggcctcaaggccccccaggacctcacggactc
cctggcattggaaagccaggtggcccagggttcccaggacaacaaggacccaagggtgag
ccgggccccaaaggacagccagggcctccaggtctccaagggcccaaaggagacaagggc
tttgggatgccaggtctgccaggactaaagggtcctccgggaatgcacggacctcctggg
cctgtgggactgccgggagtaggcaaaccaggagtgacaggatttccagggccacagggt
cctctcggtaaaccaggcctgcaaggtgaaccaggcccgcggggtcccataggcgtacct
gggattcaaggcccacctggcgtgcctggagttggaaagccaggtcaggatggcatccct
ggacgacctggatttcccggtggcaaaggggaacaaggattacctggggtgccaggaccc
cctggccttccaggggttgggaagccagggttcccagggcctaagggtgaccgaggtatg
gggggtcttcctggagctcttggacctcaaggagagaagggccccataggtgcacccgga
atgggggggcccccaggggaaccaggcttgcctggaattccaggtcccatgggacctcca
ggtgctattggctttccagggcccaaaggagaaggtggagctgtggggccacaaggacca
ttgggtcccaaaggcgagccagggttacagggtttcccagggaaaccaggtttccttggt
gaagtaggacccccgggcatgagaggtttgccaggtccaattgggcccaaaggggaggct
gggcataaaggtttaccaggtatccctggtgccccagggcttattggacccaaaggggaa
ccaggaattccaggtgatcagggtttacaaggcccatctggaattccaggaattgggggg
ccaagtggtccaattggacctcctggactcccaggtcctaaaggagaaccaggtctacca
ggtcctcctgggttccctggggtaggaaaacctggagtagcaggactccatggaccccca
gggaagcctggggctcttggtcctcaaggccagccgggccttccaggacccccgggacct
ccaggtcccccggggcccccagctgtgatgcctcccacaccaccagcccatggagagtat
ttgccagaaatggggccagggattgatggagtaaaaactccacatgcttatggaggcaaa
aagggcaaaaacggaggagtagcttatgagatgcctgcctttacagccgagttgaccacg
cccttcccaccagtgggggctccagtaaagtttgacaaattgctctacaacggcagacag
aactacaacccacagactggcatcttcacctgcgaagtccctggtgtctactactttgca
taccatgtccactgcaaaggaggaaatgtatgggtagctttgttcaagaacaatgaccct
atgatgtacacgtatgatgaatacaaaaagggctttctggatcaggcctcagggagtgct
gtgctacagcttagaccaggagaccgggtttttctccagatgccctcagagcaagctgca
ggactatacgcgggacaatatgtccattcctctttttcaggatatttattatatcccatg
taa
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