Sarcophilus harrisii (Tasmanian devil): 100920217
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Entry
100920217 CDS
T02286
Symbol
CDC40
Name
(RefSeq) pre-mRNA-processing factor 17 isoform X1
KO
K12816
pre-mRNA-processing factor 17
Organism
shr
Sarcophilus harrisii (Tasmanian devil)
Pathway
shr03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
shr00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
100920217 (CDC40)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
shr03041
]
100920217 (CDC40)
Spliceosome [BR:
shr03041
]
Complex C
Other components
Step II factors
100920217 (CDC40)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
WDR55
EIF3I
WD40_WDHD1_1st
WD40_CDC20-Fz
Beta-prop_EML_2
Beta-prop_TEP1_2nd
Beta-prop_WDR90_POC16_2nd
Beta-prop_EML
WD40_MABP1-WDR62_2nd
Beta-prop_CAF1B_HIR1
Beta-prop_EIPR1
Beta-prop_WDR75_1st
Beta-prop_TEP1_C
WD40_RFWD3
Beta-prop_RIG_2nd
ANAPC4_WD40
Beta-prop_DCAF4
Beta-prop_SPT8
WD40_MABP1-WDR62_1st
Beta-prop_IFT122_1st
WDR90_beta-prop_4th
Beta-prop_NWD2_C
WDR54
Beta-prop_Vps41
Motif
Other DBs
NCBI-GeneID:
100920217
NCBI-ProteinID:
XP_003769401
Ensembl:
ENSSHAG00000010955
UniProt:
A0A7N4PAG1
LinkDB
All DBs
Position
4:complement(191410150..191469515)
Genome browser
AA seq
579 aa
AA seq
DB search
MSAAIAALAASYGSGSGSESDSDNESGRCSLPAADSLIHLTKAPSAKLSLVGTVDAAPEV
AVKEDVETGVHLDPAIKEVQYNPSYETMFAPEFGPENPFRTQQMAAPRNMLSGYAEPTHI
NDFMFEQQRRTFATYGYALDPSLDNHQVSTKYIGSVEEAEKNQGLTVFETGQKKTEKRKK
FKENDASNIDGFLGPWAKYVDEKEVAKPSEEEQKELDEITAKRQKKGKHEDDKPGEEKTI
LHVKEMYDYQGRSYLHVPQDVGVNLRSTVPPEKCYLPKKQIHVWSGHTKGVSAVRLFPLS
GHLLLSCSMDCKIKLWEVYGDRRCLRTFVGHSKAVRDICFNGVGTQFLSAAYDRYLKLWD
TETGQCISRFTNRKVPYCVKFNPDEDKQNLFVAGMSDKKIVQWDIRSGEIVQEYDRHLGA
VNTIVFVDENRRFVSTSDDKSLRVWEWDIPVDFKYIAEPSMHSMPAVTLSPNGKWLACQS
MDNQILIFGAQNRFRLNKKKIFKGHMVAGYACQVDFSPDMSYVISGDGNGKLNIWDWKTT
KLYSRFKAHDKVCIGAVWHPHETSKVITCGWDGLIKLWD
NT seq
1740 nt
NT seq
+upstream
nt +downstream
nt
atgtcggctgccatcgccgccctggcagcgtcctacgggtcgggctcgggatccgagtcc
gactccgacaacgagagtggccgctgttccctgccagcagccgactcccttatccatctg
acgaaggcgccctcggccaagctctctctagtggggactgtggacgcggcgccggaggtg
gcggttaaggaagatgtggagactggagtacaccttgaccctgccattaaggaagtccaa
tacaatccttcctatgagaccatgtttgctcctgagtttggaccagaaaatccctttagg
actcaacagatggctgcccctaggaatatgctttctggatatgcagaaccaactcatatc
aatgacttcatgtttgaacagcagaggcgcacttttgcaacctatggctatgcattggat
ccttcattagataatcatcaagtttctactaaatatattggctctgtagaagaagctgaa
aaaaatcaaggtttaacggtatttgaaactggacagaaaaaaacagaaaagagaaaaaag
ttcaaagaaaatgatgcatcaaatattgatggtttcttaggaccttgggcaaaatacgta
gatgaaaaagaagtggctaaaccttccgaagaagaacagaaagagttagatgaaatcaca
gcaaagaggcaaaagaaaggcaaacatgaagacgacaaacctggggaagaaaagaccatt
ttacatgtcaaagaaatgtatgactatcaaggcaggtcttatcttcatgttcctcaagat
gttggtgttaatctccgttcgacagtaccacctgagaaatgttatcttcctaaaaaacaa
attcatgtttggtctggacacacaaagggtgtcagtgccgtcaggctatttcctctttct
ggccatttgttactgtcttgttccatggactgcaaaattaagctttgggaagtttatgga
gatcggcgctgtttaagaacatttgttggtcacagtaaagctgttagagatatctgtttt
aatggtgtaggaactcagttcctcagtgcagcatatgacaggtatctcaagctatgggac
actgagacaggtcagtgtatatcaagatttacaaaccggaaagttccttattgtgtcaag
ttcaatcctgatgaagataaacaaaatctttttgtggctggcatgtcagataagaagatt
gtacaatgggacatcagaagtggggagattgtacaagaatatgataggcatttgggagct
gtcaataccattgtgtttgtggatgagaataggcggtttgtgagcacttctgacgacaag
agcttacgcgtttgggaatgggacattcctgtagattttaaatatatagcagaacccagt
atgcattcaatgcctgcagtgactttatctccaaatgggaagtggctagcatgtcaatcc
atggacaatcagattttaatttttggagcacagaaccgatttagattgaataagaaaaaa
atatttaaagggcacatggtggcaggatatgcttgtcaggtggacttttccccagatatg
agctacgtgatatcaggagatggaaatggaaaattaaatatttgggactggaagactaca
aaactctacagtcgatttaaagctcatgataaagtatgcataggtgctgtgtggcaccca
catgaaacatctaaagttatcacttgtggctgggatggtcttattaaattatgggattaa
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