Sarcophilus harrisii (Tasmanian devil): 100920290
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Entry
100920290 CDS
T02286
Symbol
COL16A1
Name
(RefSeq) collagen alpha-1(XVI) chain isoform X4
KO
K24339
collagen type XVI alpha
Organism
shr
Sarcophilus harrisii (Tasmanian devil)
Pathway
shr04974
Protein digestion and absorption
Brite
KEGG Orthology (KO) [BR:
shr00001
]
09150 Organismal Systems
09154 Digestive system
04974 Protein digestion and absorption
100920290 (COL16A1)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
Laminin_G_2
Motif
Other DBs
NCBI-GeneID:
100920290
NCBI-ProteinID:
XP_023355982
Ensembl:
ENSSHAG00000010645
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All DBs
Position
3:complement(545946820..546020107)
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AA seq
1609 aa
AA seq
DB search
MWAAWAPGLWLVSLWVTCGSQGAETGEQCPTLKQEGLKLEANGDSPTNMTGFNLIKRFAL
MKVSAIKRIRNPKGPFILRLGNAQLALPTAQVFPGGVPDQFAIVLTLLLKKQTSKDTWYL
LQVTDKDGYPQISLEVNSHEKSLEFRARGLDGDFVSCIFPVAQLFDLHWHKLVLSVTGRV
VSVQLDCTSVSSQPVGPRRAVLPEGHVLLGVDAEQGKPIFFDLQQAHIYCDPALVMEEGC
CEVSPAGCPQEASKARRDTQNNELIEISPQAEGKVYTRCFCLEEPQGSKVNAQLSGNAEI
KKERGSKDASWVQKAMPADECPPCASHAVENVTLGPPGLKGGKGERGLPGSEGPKGEKGA
RGSDCVRTSPEAPLQCAEGPKGEKGDRGDSGPAGITGSTGQKGQKGERGDAGFKGSVGKP
GRDGRPGEICVIGPKGQKGDPGFVGPEGLAGEPGPPGLPGPPGIGLPGTPGDPGGPAGPK
GDKGSSGSPGKEGPGGKPGRPGTPGLKGEKGDPCEVCPTLPEGIQNFMGLPGRPGPKGEP
GEPGLLKDYLGSAMGRKGNRGEPGISGMKGEKGEPCLPCSPGVDAQNLVGPKGDVAFPGF
GLPGLPGKAGAPGPTGIKGEKGNFGEMGPIGQPGTPGTMGPAGIKGEKGEPCEQCPSTSE
PSGRALPGPPGEKGEPGQPGSGQPGKPGKAGEPGLKGQKGDAGNPGDPGKPGTEGQPGLS
GQPGIRGRPGPKGEKGDACVACPTLQGEFTDVAGVPGRPGPKGDQGPEGVGRPGKPGQPG
LPGVQGPPGLKGLQGDPGPPGLSVQGPPGEAGDQGLPGAMGPPGPRGPPGYAGEKGAKGS
AGLKGAVGPPGPTGLSVTGPPGRDGAQGQPGLPGASGTPGEKGARGEKGDPGECSCPPGS
RGEAIFSGMPGPPGVPGPPGPPGMPGRQGIPGHNGLPGLPGPAGDLGPLSAEAERHILKN
ICGDCAQAQTGLPTPSLMKGEKGDQGTPGVPGIDNCARCFLERDRPRAEEPPGNGEGDLG
CAGSPGQPGPPGLPGQRGEEGPPGMRGSPGLPGPIGPPGFPGAVGSPGLPGLQGERGLTG
LTGDKGEPGPPGQPGYPGAMGPPGLPGIKGERGYTGPAGEKGESGPPGAEGLPGPVGPAG
PRGERGAQGGAGEKGDQGFQGQPGFPGPPGPPGFPGKAGPAGPPGPPAEKGSEGIRGPSG
MPGPPGPPGPPGIQGPAGLEGLDGKDGKPGLRGDPGPPGPPGLMGLPGFKGKTGHPGLPG
PKGDCGKPGPPGSSGRPGAEGEPGPMGLQGRPGPPGHAGPPGSPGQPGPAGISGIGLKGD
RGTPGERGLAGLPGEPGAPGHPGPPGEPGSDGATGKEGPPGKPGPYGLMGPKGDPGSAGQ
KGEPGEKGRAGMPGGPGKSGSMGPIGPPGPSGERGHPGSPGPAGSPGLPGLPGTMADMVN
YDEIKRFIRQEIIKMFDERMAYYTSRMQFPVEMAAAPGRPGPPGKDGAPGRPGSPGSPGL
PGQIGREGRQGLPGMRGLPGTKGDKGDTGIGIAGETGLPGPPGPQGPPGYGKLGPTGPMG
QQGIPGIPGPPGPTGQPGKAGHCNPSDCFSAMPMEQQYPPVKSMKGPFG
NT seq
4830 nt
NT seq
+upstream
nt +downstream
nt
atgtgggcagcctgggctccgggactgtggctcgtcagtctctgggtcacctgtggcagc
caaggagcagagactggtgaacaatgtcccaccctgaagcaagagggactgaagctagag
gccaatggtgactccccaaccaacatgacaggttttaatctcattaagaggtttgccctc
atgaaggtctcagccatcaagcggattcggaacccaaaaggacccttcattctgcgcttg
gggaatgcccagcttgctctccccacagcccaggtgttccctgggggtgtccctgaccag
tttgcaatagtgttgacccttctgctgaaaaaacagacaagcaaagatacctggtattta
ttgcaagtgactgataaagatggatacccacagatctccttggaggtcaacagtcacgag
aagagcctggagttccgggcccggggcttggatggcgactttgtgtcctgcatcttccct
gtggcccagctctttgacctgcactggcacaaattggtgctgagtgtgactgggcgtgtg
gtttcagtccaattggactgcacctccgtatcctcccaacctgtgggtccccggcgtgcc
gtgcttcctgagggccatgtccttctgggtgtggatgctgagcaaggcaagcctatcttc
tttgatttgcagcaggcacacatctactgtgaccctgccctggtgatggaagaagggtgc
tgcgaggtctcaccagctgggtgccctcaggaggcctccaaggcccgacgggacacccag
aacaacgagctcattgagatcagtccacaggcggagggcaaagtctacactcgatgcttc
tgcctggaggagccgcagggcagcaaggtgaacgctcagctctcaggaaatgctgaaatc
aagaaagagaggggaagtaaggacgcctcctgggtacagaaggctatgccagctgatgag
tgcccaccttgtgccagccatgccgtggagaatgtcacactgggtcctcctggtctcaag
ggggggaaaggagaacggggtttgcctggctccgaaggacccaagggagagaaaggagct
cggggctctgattgtgtccggacttccccagaggcccctctccagtgtgctgaaggcccc
aaaggtgaaaagggagatcgaggagactcgggtcctgcaggaattactggatcgactgga
cagaagggccagaaaggagagagaggagacgctggcttcaagggctcagtggggaagcct
ggccgagacggccggcccggggaaatctgtgtcatcggccccaaagggcaaaagggtgat
cccggcttcgtgggaccagaagggctggctggagagccggggcccccaggactgccagga
ccccctgggattgggctgccaggaacacctggggatcctggtggcccagcgggtccaaaa
ggagacaagggaagctctggatctcccgggaaagaaggtccagggggaaagcctggaaga
ccaggaacgccaggactgaaaggggaaaagggtgacccctgtgaggtgtgtcctactctg
ccagaggggatccagaacttcatgggacttccaggaagaccgggcccaaagggggagccg
ggagaacccggcctgctgaaggattacctgggcagtgctatgggccggaagggcaaccgg
ggagagcctggcatcagtgggatgaagggtgaaaagggggagccatgtttgccctgcagc
ccaggtgtagatgctcagaacttagtggggcctaagggagacgtggccttcccaggcttt
ggactgcctggccttccggggaaagctggggcaccagggccaacagggattaaaggagag
aagggtaactttggtgagatggggccaattggccaaccgggaacccctgggaccatggga
cctgctggcattaaaggggagaagggggagccgtgtgagcagtgcccttccacatcagag
ccttctggcagggctctccctgggcctcccggtgagaaaggggaaccaggccaacctggg
agtggccagcccggaaagccgggtaaagcaggggaacctggattgaagggacaaaagggt
gacgcaggtaatccaggagaccctgggaagccgggcactgagggacagccagggctgtcc
ggacagccggggatcaggggtcgcccagggccgaaaggagaaaaaggagatgcctgtgtc
gcctgccccacgctgcagggagagttcacagatgtcgctggagttcctgggagaccaggg
cccaagggagaccagggcccggagggcgtgggccgtcctggcaaaccgggacagcctggc
ctgcctggtgttcaaggcccacctgggctcaaaggtttgcagggtgatccagggcctcca
gggctgtcggtccaaggtcctccgggagaggctggtgaccagggtttgccaggtgccatg
ggacctccaggacctcggggcccacccggctacgctggagagaagggcgccaagggttct
gctgggctgaaaggggctgtgggacccccaggccccacgggcctcagtgtcaccggcccc
ccgggccgggacggggctcaagggcagccagggctgccgggggccagcgggacaccggga
gaaaagggagcacgtggagaaaagggtgacccaggggagtgctcctgcccccccggttcc
cgaggagaagctatcttctccggcatgccgggtcccccaggagtccccggacctccagga
ccccctggaatgcctggacggcagggaatacctggccacaacggtttgccgggactgcct
gggcctgccggagacttgggccccctctcagcagaggctgaaagacacattctgaagaac
atctgtggggactgtgcacaggctcagacgggccttcccaccccgagcctgatgaaggga
gagaagggcgaccagggcactcccggcgttccgggcatcgacaactgcgcccggtgcttc
ttagaacgggaccgcccgcgagctgaggagccccccggaaacggagagggagacctgggg
tgtgctgggagcccaggccagcccggccctccaggacttccaggacagagaggagaagag
ggcccacccgggatgagaggctccccagggcttccagggcccattggccccccaggtttc
cctggcgctgttggctcccccggattacctggtctccagggagaacgtggtcttaccggg
ctgacgggagacaagggggagccgggcccaccaggacaaccaggctacccaggtgccatg
gggcctccgggactgcctggcatcaagggagagcgaggctacacgggtcctgccggagag
aagggagagtcgggtccaccaggagctgaaggtcttccaggccccgtgggccctgcaggt
ccccgaggagaaagaggagcccaaggtggtgctggtgagaaaggagaccagggatttcag
ggacagccaggcttcccaggtccaccggggcccccaggattcccaggcaaagcaggacca
gctggcccaccgggccccccagctgagaagggaagtgaaggaattcgaggaccatcaggc
atgccgggccctccaggacctcccggaccccctggcatacagggtcctgctggcctcgag
ggactagatgggaaggatggaaagcctggtttgaggggggaccctggccctcctggaccc
ccaggactcatgggactcccgggcttcaagggaaaaacaggacatccaggcctccctggg
cccaagggcgactgtggtaaaccaggccctcctggcagcagcgggcggccaggagctgag
ggtgaacctggccccatgggactccagggaagacctggaccacctgggcatgcaggtccc
cctggatctcccggccagcctgggcctgctgggatcagtggaatcggactaaaaggagat
cggggaaccccaggagaaaggggtcttgcaggtcttccaggtgaacctggtgcccctggg
caccctggacccccaggtgagcctggatccgatggagcgaccggcaaagaggggcctcct
ggaaagccaggaccttatggccttatgggcccaaagggtgaccctggatctgcaggacag
aagggcgagcctggagagaaggggagagccggcatgccggggggaccaggcaagagtggc
tccatgggccctattgggccaccggggccttctggcgagagaggccacccaggttctccc
gggcctgctgggtccccagggctgccaggactgcctggaacaatggcagatatggtgaat
tatgatgaaatcaagagattcatcagacaggagatcatcaaaatgtttgatgagaggatg
gcttattacacatccaggatgcagttccctgtggagatggctgcagccccaggcagaccg
ggacccccaggcaaggatggcgctccaggccgaccaggctctccaggctcgcccggactt
ccaggacagatcggcagagaaggccggcagggcctgccaggaatgagaggtttgcctggt
accaaaggtgacaaaggagacactggcattggcattgctggagaaacaggtctccctggg
cctccaggtccccagggacccccagggtatggaaagctgggcccaactgggcccatgggt
caacaggggatccctggaatcccgggccccccgggccccacaggacagcctggaaaggca
ggccactgtaacccttcagactgcttcagtgccatgcccatggagcagcagtatccacca
gtgaaaagcatgaaggggccatttggctga
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