Sarcophilus harrisii (Tasmanian devil): 100920389
Help
Entry
100920389 CDS
T02286
Symbol
ARID1B
Name
(RefSeq) AT-rich interactive domain-containing protein 1B isoform X1
KO
K11653
AT-rich interactive domain-containing protein 1
Organism
shr
Sarcophilus harrisii (Tasmanian devil)
Pathway
shr03082
ATP-dependent chromatin remodeling
shr04714
Thermogenesis
shr05225
Hepatocellular carcinoma
Brite
KEGG Orthology (KO) [BR:
shr00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
100920389 (ARID1B)
09150 Organismal Systems
09159 Environmental adaptation
04714 Thermogenesis
100920389 (ARID1B)
09160 Human Diseases
09162 Cancer: specific types
05225 Hepatocellular carcinoma
100920389 (ARID1B)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
shr03000
]
100920389 (ARID1B)
03021 Transcription machinery [BR:
shr03021
]
100920389 (ARID1B)
03036 Chromosome and associated proteins [BR:
shr03036
]
100920389 (ARID1B)
Transcription factors [BR:
shr03000
]
Eukaryotic type
Helix-turn-helix
ARID
100920389 (ARID1B)
Transcription machinery [BR:
shr03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
100920389 (ARID1B)
Chromosome and associated proteins [BR:
shr03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
100920389 (ARID1B)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BAF250_C
ARID
Motif
Other DBs
NCBI-GeneID:
100920389
NCBI-ProteinID:
XP_031793438
Ensembl:
ENSSHAG00000017851
LinkDB
All DBs
Position
4:complement(134147021..134673634)
Genome browser
AA seq
1831 aa
AA seq
DB search
MSPGNTGQTINRSQGSPMDPMVMKRPQLYGMGNNPHSQPQQSSPYPGGSYGPPGPQRYPI
GIQGRTPGAMGGMQYPQQQMPPQYGQQGVSGYCQQGQQPYYNQQPQPQHLPPQAQYLSTQ
SQQRYQTQQDMSQEGYGTRSQPPMAPGKPNHEDLSLIQQERPSSLPDLSGSIDDLPTGTE
ATLSSAVSASGSTSSQGDQSNPAQSPFSPHASPHLSSIPGGPSPSPVGSPVGSNQSRSGP
ISPASIPGSQMPPQPPGTQSESSSHPALSQSPMPQERGFMTGTQRNPQMSQYGPQQTGPS
MSPHPSPGGQIHPGIGSFQSNSSGAYGPQMSQYGPQGNYSRPPTYSGVPSASYSGPGPGM
GINANNQMHGQGPSQPCGTMPLGRMPSTGMQSRPFPGNMSSMTPNSPGMAQQGGPGMGPP
MPTVNRKAQEAAAAVMQAAANSAQSRPPYIRSPAYPSQSGAGGRPMFSSQHPNYGNAQAP
MMHQPDQYGQGSFPGMNQSGLMGSSSPYTQPMNNSSSLMNPQAPPYSMTPNMVNSSTASM
GLADMMSPGESKLPMPLKTDGKEEGTPQAESKSKDSYSSQGISQPPTPGNLPVPSPMSPS
SASISSFHGDESDSISSPGWPKTPSSPKSSSSTTTGEKITRVYELGNEPERKLWVDRYLT
FMEERGSPVTSLPAVGKKPLDLFRLYVCVKEIGGLAQVNKNKKWRELATNLNVGTSSSAA
SSLKKQYIQYLFAFECKIERGEEPPPEVFSTGDTKKQAKIQPPSPANSGSLQGPQTPQST
GSNSMAEVPGDLKPPTPASTPHGQMAPMPGGRNSAVSVHDPFSDATDSSFPKRNSMTPNA
PYQQGMNIPDMMGRMPYEPNKDPFGGMRKVSGSSEPFMTPGQMPNSGIQDMYNQAPAGAM
SNMGMGQRQFPYGASYDRRHEPYGQQYPGQGPPSGQPPYGGHQPGIYPQQPNYKRHMDGM
YGPPAKRHEGDMYNVQYGSQQQEMYNQYGSTYSGPDRRPIQGQYPYPYNRERMQGPGQMQ
QHGIPPQMIGGPMQSSSGEGPQQNMWPTRNDMPYPYQNRQGPGGPAQAPPYPGMNRTDEM
MVPDQRINHESQWPSHVNQRQPYMSSSASMQPITRPPQSSYQTPPSMPNHISRAPSPASF
QRSLENRMSPSKSPFLPSMKMQKVIPTVPASQVTGPPPQPPPIRREITFPPGSVEASQPV
LKQRRKITSKDIVTPEAWRVMMSLKSGLLAESTWALDTINILLYDDSTVATFNLSQLSGF
LELLVEYFRKCLIDIFGILMEYEVGDPSQKALDHNTNKKDDSLTLADDSGKEEEAECIDY
YDDEDEDEEEEDEEDEKTGAEDKSTVLASPNASIDLKERPKQASKFDKLPIKIVKKNNLF
VVDRSDKLGRVQEFNSGLLHWQLGGGDTTEHIQTHFESKMEIPPRRRIPPALGFLGKKKD
LEGRGEFEDHPEKSIIATIDDVLSARPGALPEDSNPSNQVESSKFPFGIHEAKSHRNIKL
LEDEPRSRDETPLCTIAHWQDSLAKRCICVSNIVRSLSFVPGNDAEMSKHPGLVLILGKL
ILLHHEHPERKRAPQTYEKEEEEDKGVTCSKDEWWWDCLEVLRDNTLVTLANISGQLDLS
AYTESICLPILDGLLHWMVCPSAEAQDPFPTVGPNSVLSPQRLVLETLCKLSIQDNNVDL
ILATPPFSRQEKLYATLVRYVGDRKNPVCREMSMALLSNLAQGDALAARAIAVQKGSIGN
LISFLEDGVTMAQYQQSQHNLMHMQPPPLEPPSVDMMCRAAKALLAMARVDENRSEFLLH
EGRLLDISISTVLNSLVASVICDVLFQIGQL
NT seq
5496 nt
NT seq
+upstream
nt +downstream
nt
atgagccctggaaacactggacagaccattaacagatcccagggtagtccaatggatcca
atggtaatgaagagacctcagttgtatggaatgggcaataatcctcattcccagcctcag
caaagcagtccataccctgggggatcatatggtccccctggcccacagcgttatccaatt
ggaatccagggacggaccccaggtgccatgggaggaatgcaatatccacaacaacagatg
ccacctcagtatggtcagcaaggtgtaagtggttactgccaacagggccaacaaccatat
tacaaccagcaaccacagcctcaacacttaccaccccaggcacaatatttgtcaacacag
tcccagcagaggtaccaaacacagcaggacatgtctcaggaaggctatggaactagatcg
caacctcctatggcaccaggaaagcctaaccatgaagatttgagcctaatacagcaagaa
agaccctcaagtttaccagacttatctggctccattgatgacttgcccacaggaacagaa
gcaactttgagttcagcagtgagtgcatcaggctccactagcagtcaaggggatcagagc
aatcctgcacagtcacccttctctcctcatgcttccccccatctttccagtatcccaggg
ggcccatcaccttcccctgtgggctctcctgttgggagtaaccagtcaagatcgggccca
atttctcctgcaagtattccaggcagtcagatgccacctcagcctcctggtacccaatca
gaatccagttcccatccagccttgagccagtcaccaatgccacaggaacgaggttttatg
acaggcacacaaaggaaccctcagatgtctcaatatgggcctcaacaaactggaccatct
atgtcacctcatccttcccctggaggacaaatacatcctggaattggtagctttcaaagt
aactctagtggggcttatggtcctcagatgagccaatatggaccacaaggtaactactcc
agacctccaacatatagtggggtacccagtgcaagctacagtggcccagggcctggcatg
ggtatcaatgccaataaccagatgcatggacaagggccaagccagccatgtgggaccatg
cccctgggacggatgccatcaactgggatgcagagcagaccatttcctggaaacatgagc
agtatgacacccaattctcctggcatggctcagcaaggagggcccggaatgggcccccca
atgccaactgtgaaccgtaaggcacaggaggccgcagctgcagtgatgcaagctgctgca
aactcagctcaaagcaggccaccatacattaggtcgcctgcttatcccagccagtctggg
gctggcggacgtcccatgttttcttcccagcaccccaactatggcaacgctcaggctccc
atgatgcaccagcctgaccagtacgggcaaggcagttttcctggcatgaatcaaagtgga
cttatgggttccagctctccttatacccagcccatgaacaacagttccagcctgatgaat
cctcaagctcctccctacagcatgacccccaacatggtgaatagttcaacagcatctatg
ggtcttgcagatatgatgtcacctggtgagtccaaattgcccatgcctctcaaaacagat
ggtaaagaagaaggcactcctcaggctgagagcaagtcaaaggatagctacagctctcag
ggtatttctcagcccccaaccccaggcaacctgccagtcccttccccaatgtccccaagc
tctgctagcatctcctcatttcatggagatgaaagtgatagcattagcagcccaggctgg
ccaaagactccatcaagccctaaatcaagttcttctacaaccactggggagaagatcaca
agggtgtatgagctggggaatgaaccagagcgcaagctatgggtggacagatacctgact
ttcatggaggagcgaggctcacctgtgaccagtctgccagcagtgggcaaaaagcccctg
gacctgttcagactctatgtttgcgtcaaagagattggtggtttggcacaggttaataaa
aacaaaaagtggcgcgagctggccaccaacctgaatgtgggcacttctagcagtgcagct
agctccctgaaaaagcagtatattcagtacctgtttgcttttgagtgcaagattgaaaga
ggggaggagccccctccagaagtcttcagcactggagatactaagaaacaagctaagata
cagccgccatctcctgcaaattcaggatccttacaaggtccacagaccccccagtcaact
ggtagtaactccatggcagaagttccaggtgatctgaagccacccacaccagcttctaca
cctcatggacaaatggctccaatgcctggtggcaggaacagtgcagtcagcgtgcatgac
cccttctcagatgcgactgattcctcattccccaaacggaactccatgacaccaaatgca
ccataccagcagggcatgaacattccagacatgatgggaaggatgccctatgaacctaac
aaggacccctttggtggaatgagaaaagtgtctggaagcagtgaacccttcatgacacca
ggacaaatgcctaatagtgggatacaggatatgtataaccaggccccagctggagcaatg
tccaacatgggaatgggccagcgacagtttccctatggggccagttatgacagaaggcat
gagccttatgggcagcagtatcctggacaaggacctccctcaggacagccaccatatgga
ggacaccagcctggaatatatccacagcaaccgaactacaaacgtcacatggatggcatg
tatgggcctccagcaaaacgccatgagggagatatgtataacgttcagtatggcagccag
cagcaagagatgtataaccagtacggcagcacatactctggaccagacaggaggcccatc
cagggacagtatccctatccttacaacagagagcgaatgcagggcccgggtcagatgcag
caacacggaatacctccccagatgatcggaggccccatgcagtcctcctcaggcgagggc
cctcagcagaacatgtggcccacccgcaatgatatgccttatccgtaccagaataggcaa
ggtccaggaggccctgcacaggctcccccttatccaggaatgaaccgcactgatgaaatg
atggtacctgatcagaggataaaccacgagagccagtggccttctcacgtcaaccaacgg
cagccttacatgtcttcttcagcctccatgcagcccatcactcgacctccccagtcatct
taccagacgccgccatcgatgccaaaccacatctccagggcgcccagcccagcatccttc
cagcgctccctggagaaccgcatgtctccaagcaaatcccccttcttgccctccatgaag
atgcagaaggtcatccccacggttccagcctcccaggttacggggccaccgccccagcca
ccccccattcgacgagagatcactttccctccagggtctgtagaagcatcacaacctgtt
ttgaaacaaagaagaaagattacctcaaaagacattgtaactcctgaggcgtggcgtgtg
atgatgtcccttaaatcgggccttttggctgaaagtacatgggctttggacactattaat
attctcctctatgatgacagcaccgtggctactttcaatctctctcagttatctggattt
cttgagcttttagtagagtactttagaaaatgcctgattgacatttttggaattctaatg
gaatatgaagtgggagaccccagtcaaaaagcacttgatcacaacacaaataagaaagat
gacagtctgactttggcagatgactctgggaaggaagaagaagctgaatgtattgattat
tatgatgatgaagatgaagatgaagaggaggaagatgaagaagacgaaaagacaggagca
gaagataagagcacggttcttgcctctcccaatgccagtattgatctaaaagagaggccc
aagcaagcaagtaaatttgacaaactgccaataaagatagtaaagaagaataatctgttt
gtggttgaccggtctgacaaactaggccgtgttcaggaattcaacagcgggcttctccac
tggcagcttgggggaggcgacacaactgaacatatccagactcactttgagagcaagatg
gaaattccccctcgccggcggatccctcctgccctcggcttcctgggaaaaaagaaagat
ctggaaggaagaggtgaatttgaggaccatccagagaaaagcataatagcaaccattgat
gatgtcttgtcggctcggcccggagcattgcctgaagactcaaaccctagtaaccaggtc
gaaagcagtaagtttccctttggtatccatgaagccaaaagccaccggaatattaaactg
ctggaggatgagccaaggagccgagacgagactccactatgcaccattgcccactggcag
gactctctggccaagcgctgtatctgtgtgtcaaatattgtccgtagcttgtcttttgtg
cctggcaatgatgccgaaatgtccaaacatccaggcctggtgctgatcctggggaagctg
attctccttcaccatgaacatccagagagaaaacgggcgcctcagacctatgagaaagag
gaggaggaagataaaggggtgacctgtagcaaggatgagtggtggtgggactgcctcgag
gtcttaagggataacacattggtcacattagccaacatttctgggcagctagacttgtct
gcttacacggaaagcatctgcttgccaattttggatggcttgctacactggatggtgtgc
ccatccgcagaggcacaggatccctttcccacggtgggacccaactcagtgctgtcgcct
caaagactcgtactggagaccctgtgtaagctcagcatccaggacaataacgtggacctt
atcctggccacccctccattcagccgtcaggagaaactctacgctactttagttaggtac
gttggagaccgcaaaaacccggtctgccgagaaatgtccatggcgctcttatcgaacctt
gcccaaggggatgcgctagcagcaagggccatagctgtgcagaagggaagcatcggaaac
ttgataagcttcctagaggacggggtcacgatggcccagtaccagcagagccagcataac
ctcatgcacatgcaacctccacctctggaaccacctagcgtagacatgatgtgcagggcg
gccaaggccttgctggccatggccagagtggacgagaaccgctcagagttccttttgcac
gaaggccgtttgctggatatctcgatatcgactgtcctgaactctctggttgcctctgtc
atctgtgatgtactgtttcagattgggcagttatga
DBGET
integrated database retrieval system
