Sarcophilus harrisii (Tasmanian devil): 100920775
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Entry
100920775 CDS
T02286
Symbol
FDFT1
Name
(RefSeq) squalene synthase isoform X1
KO
K00801
farnesyl-diphosphate farnesyltransferase [EC:
2.5.1.21
]
Organism
shr
Sarcophilus harrisii (Tasmanian devil)
Pathway
shr00100
Steroid biosynthesis
shr01100
Metabolic pathways
Module
shr_M00101
Cholesterol biosynthesis, FPP => cholesterol
Brite
KEGG Orthology (KO) [BR:
shr00001
]
09100 Metabolism
09103 Lipid metabolism
00100 Steroid biosynthesis
100920775 (FDFT1)
09180 Brite Hierarchies
09181 Protein families: metabolism
01006 Prenyltransferases [BR:
shr01006
]
100920775 (FDFT1)
Enzymes [BR:
shr01000
]
2. Transferases
2.5 Transferring alkyl or aryl groups, other than methyl groups
2.5.1 Transferring alkyl or aryl groups, other than methyl groups (only sub-subclass identified to date)
2.5.1.21 squalene synthase
100920775 (FDFT1)
Prenyltransferases [BR:
shr01006
]
Terpene biosynthesis
Squalene/phytoene synthase
100920775 (FDFT1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SQS_PSY
TNFR_ELAPOR1_6th
SCC3_C
DUF1539
GAS
Motif
Other DBs
NCBI-GeneID:
100920775
NCBI-ProteinID:
XP_003757973
Ensembl:
ENSSHAG00000009429
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All DBs
Position
2:168642292..168680618
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AA seq
473 aa
AA seq
DB search
MAAACCTKAGAFFKLTLGLTPTAAPRASGIGVGSSQRCCVSAFSPWTSRDWCRGEGICYW
PPIVSRLSQPRASSTSTSTSTSTCLLCPQDTLSDGLKTCYKYLNQTSRSFAAVIQALDNE
LRNAVCIFYLVLRALDTVEDDMTISMEKKVPLLQNFHSYLYQPDWRYMESNQKDRQVLED
FSTVSLEFRNLAESYQVVINDICQKMGHGMAEFLEKKVNSVQEWEKYCHYVAGLVGIGLS
RLFSASELEDPIVGQDSKLANSMGLFLQKTNIIRDYLEDIMEGREFWPQEVWSRYAKKLS
DLAKPENIDLAVHCLNELITNALQHIPDVLTYLSQLRNQSVFNFCAIPQVMAIATLAACY
NNQQVFRGRVKIRKGQAVTLMMEATNMPAVKAIMYQYMEEIYQRIPSSDPSSSKTKQIIS
SVRKQNLPSCQLVSRNHYSPIYLSCAMLLVALSWQYLSTMSQATEEYVQTGEH
NT seq
1422 nt
NT seq
+upstream
nt +downstream
nt
atggctgctgcctgctgtactaaggctggggcctttttcaagctcactctggggctgact
cccacagcagctcccagggcttctgggataggtgtcgggagttctcagcgttgctgtgtc
tctgccttttccccctggactagtagagattggtgcagaggagaaggaatatgttattgg
ccccctattgtatctcgactttcacagccccgggcctcctcaacttctacctccacttct
acttccacctgtcttctctgtccacaggacactctcagcgacggcctgaaaacttgttac
aagtacttgaaccagaccagccgcagctttgcagcagtgatccaggcacttgataatgag
ctgcgcaatgctgtgtgcatattttacctggtccttcgagctctggacactgtggaagat
gacatgacaatcagtatggaaaaaaaggtcccattgttgcaaaattttcactcttacctt
taccagccagattggaggtatatggaaagcaatcaaaaggatcggcaagtcttagaggat
ttttcaacggtctccttagagtttcgaaatctggcggagagctatcaagtggtgattaat
gacatttgtcaaaaaatggggcatggaatggcagagtttttggaaaagaaagtgaactcc
gttcaggaatgggaaaagtactgtcattatgttgctggactagtagggattggcctttct
cgtctgttctcggcttcagaattggaagaccccattgttggacaggactcaaagcttgcc
aattctatgggtttattcctacagaagacgaacatcattagagattatttagaagacatt
atggaagggagagagttttggccccaagaggtttggagtcgttatgccaagaagttgtct
gatttagcaaaaccagaaaatattgacttggctgtccattgtctcaatgaactgattact
aatgctttacaacacatcccagatgtcctcacctatctttcccaactaagaaatcaaagt
gtgttcaacttttgcgctattccacaggtgatggctattgctaccctggctgcctgttat
aacaaccagcaagtattcaggggaagagtgaagattcggaagggtcaagcagtaacatta
atgatggaagctaccaacatgccagctgtcaaagctattatgtaccagtacatggaagag
atttatcaaagaatcccaagctcagacccatcttccagcaagacaaagcagatcatctcc
tccgttcggaaacaaaatcttcccagttgtcaactggtctctcggaatcactattcacct
atttacttatcatgtgccatgcttttggttgctttaagctggcaatatctcagcaccatg
tcccaggccacagaagagtatgttcagactggggaacactga
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