Sarcophilus harrisii (Tasmanian devil): 100920810
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Entry
100920810 CDS
T02286
Symbol
COL9A2
Name
(RefSeq) LOW QUALITY PROTEIN: collagen alpha-2(IX) chain
KO
K08131
collagen type IX alpha
Organism
shr
Sarcophilus harrisii (Tasmanian devil)
Pathway
shr04151
PI3K-Akt signaling pathway
shr04510
Focal adhesion
shr04512
ECM-receptor interaction
shr04820
Cytoskeleton in muscle cells
shr04974
Protein digestion and absorption
shr05165
Human papillomavirus infection
Brite
KEGG Orthology (KO) [BR:
shr00001
]
09130 Environmental Information Processing
09132 Signal transduction
04151 PI3K-Akt signaling pathway
100920810 (COL9A2)
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
100920810 (COL9A2)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
100920810 (COL9A2)
09142 Cell motility
04820 Cytoskeleton in muscle cells
100920810 (COL9A2)
09150 Organismal Systems
09154 Digestive system
04974 Protein digestion and absorption
100920810 (COL9A2)
09160 Human Diseases
09172 Infectious disease: viral
05165 Human papillomavirus infection
100920810 (COL9A2)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
shr00535
]
100920810 (COL9A2)
Proteoglycans [BR:
shr00535
]
Extracellular matrix (ECM) proteoglycans
Others
100920810 (COL9A2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
100920810
NCBI-ProteinID:
XP_031818125
Ensembl:
ENSSHAG00000007143
LinkDB
All DBs
Position
3:complement(545505158..545532806)
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AA seq
688 aa
AA seq
DB search
MAGLVGSLRLFVLFQALSLSLAQIRGPPGEPGPPGPPGPPGVPGSDGLDGDKGPPGKPGF
PGQKGDPGKPGPNGPDGKPGIDGLTGAKGEPGXSGTPGAKGQPGLPGPPGLPGPGFAGPQ
GPPGPVGLPGEIGIPGPKGDPGPEGPSGPPGPPGKPGRPGTIQGLEGSADFLCPTNCPAG
VKGPQGLQGVKGHPGRRGPLGEPGRQGKPGPKGDVGASGEQGIPGPPGPPGVRGYPGVDG
AKGEMGPQGYKGMLGSIGAAGKPGEEGPRGSPGRAGEKGDVGSQGVPGPQGSGGPKGENG
LPGIDGKDGTPGIPGVKGSAGQPGRPGNPGHQGLAGLPGQPGTKGEPGDKGEPGQRGFPG
LSGPPGKPGEPGPQGEVGPQGIPGLKGDQGERGPVGQPGLQGKAGAKGEQGPPGIPGPQG
LPGIKGNKGFPGKIGARGSSGDPGVEGLPGEKGEKGESGEPGPKGQQGIRGETGFPGPTG
DAGAPGVQGYPGPPGPRGITGERGIPGLPGRQGVAGRDASDQHIVDVVLKMMQEQLAEVA
VSAKREALGGVGGMGPPGPPGPPGYPGKQGAHGHPGPRGIPGIIGAVGQIGNTGPKGRRG
EKGERGDEGRGHPGQPGPPGIPGLPGRPGQAINGKDGDRGSPGAPGEGGRPGLPGPVGLP
GYCDPAACLGASAYASARLTEPGTIKGP
NT seq
2067 nt
NT seq
+upstream
nt +downstream
nt
atggccgggctggtcgggagcctccgattgtttgtcctcttccaggcgctcagcctctcc
ctggctcagattagaggcccgccaggagaaccagggccccccggtcccccaggtccacca
ggagtgccaggctcagacggccttgacggtgacaagggaccccctggaaaacctggattt
ccgggacaaaaaggtgacccaggaaagccgggtccaaatgggccagatgggaagccaggg
attgacggcctcaccggagcgaagggagagccaggtnnttcagggacccctggagctaag
ggccagcccggcctccccggccccccgggtctgccgggccctggctttgcaggacctcag
ggacctccaggaccagttggacttcctggagaaattggcatccctgggcccaagggggac
cccggacctgagggaccatcaggccctcctggacctccaggaaagcccggccgtcctggg
accatccagggccttgaaggcagtgctgacttcctgtgtccgaccaactgcccagctggt
gtgaaggggccacaggggctgcagggggtgaagggacatccaggccgccggggacccctg
ggagagccaggcagacaagggaagccaggtcccaaaggagatgtgggtgcctccggtgag
cagggaattcctggccctccgggccccccgggcgtcaggggctacccaggcgtagatgga
gccaaaggagagatgggtccccaaggctacaaggggatgcttgggtccatcggtgccgct
gggaagcccggtgaggagggtccccggggatcaccaggcagagctggggagaagggagat
gtgggcagtcaaggtgttccaggcccccagggaagtgggggacccaagggtgagaacggc
ctacctggcattgatggcaaggatgggacacctggaattcccggggtgaagggcagtgcc
ggacagcctgggcggcccggaaaccccggtcaccaaggactggcgggtttgccaggtcag
ccagggactaaaggggagccgggagacaagggtgagcctggccagaggggcttcccagga
ttgtctggcccccccgggaaaccgggtgagcctgggcctcaaggagaagtcggcccccaa
ggcatcccagggctgaagggggaccaaggcgagagaggccccgtggggcaaccaggccta
caagggaaagctggtgccaagggggagcaggggcctccagggatcccggggccccaaggt
ctgccaggcatcaaaggaaacaagggcttcccagggaagatcggtgccagaggcagtagt
ggtgatccaggtgtggaaggtctccctggggagaaaggagagaagggagagtctggagaa
ccgggccccaagggacagcaaggcatccgtggggagacaggcttcccaggtcccacaggg
gatgcaggagcccctggagtgcagggttacccaggacctccagggcctcgagggatcact
ggagaaaggggtatcccaggtctgcctggaagacaaggcgtagcgggccgggatgccagt
gaccagcacatcgtggatgtggtgctgaagatgatgcaagaacagctggctgaagtggca
gtgagtgccaagcgagaggccttgggtggcgtagggggaatgggtcccccaggtccccca
ggccctcctggatacccagggaagcaaggtgcacatggacatccaggcccccgaggcatt
cctggtatcataggagctgtgggacagatcggcaacacggggcccaaggggagacgtgga
gagaaaggagaacgaggtgatgagggtcgtgggcatccaggacagccagggcctccagga
attcccggacttcctggtcggccaggccaggccatcaatggcaaagatggagaccgtgga
tcaccgggtgccccaggagagggcggtcggcctggcctgcctggccctgtggggctcccc
ggctactgtgaccctgcagcttgccttggggcctcagcttatgcttcggcccgcctcaca
gaaccagggaccatcaaggggccctga
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