Sarcophilus harrisii (Tasmanian devil): 100920836
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Entry
100920836 CDS
T02286
Symbol
COL6A5
Name
(RefSeq) collagen alpha-5(VI) chain isoform X1
KO
K06238
collagen type VI alpha
Organism
shr
Sarcophilus harrisii (Tasmanian devil)
Pathway
shr04151
PI3K-Akt signaling pathway
shr04510
Focal adhesion
shr04512
ECM-receptor interaction
shr04820
Cytoskeleton in muscle cells
shr04974
Protein digestion and absorption
shr05165
Human papillomavirus infection
Brite
KEGG Orthology (KO) [BR:
shr00001
]
09130 Environmental Information Processing
09132 Signal transduction
04151 PI3K-Akt signaling pathway
100920836 (COL6A5)
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
100920836 (COL6A5)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
100920836 (COL6A5)
09142 Cell motility
04820 Cytoskeleton in muscle cells
100920836 (COL6A5)
09150 Organismal Systems
09154 Digestive system
04974 Protein digestion and absorption
100920836 (COL6A5)
09160 Human Diseases
09172 Infectious disease: viral
05165 Human papillomavirus infection
100920836 (COL6A5)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
shr04147
]
100920836 (COL6A5)
00536 Glycosaminoglycan binding proteins [BR:
shr00536
]
100920836 (COL6A5)
Exosome [BR:
shr04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
100920836 (COL6A5)
Glycosaminoglycan binding proteins [BR:
shr00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
100920836 (COL6A5)
Hyaluronan
Extracellular matrix or blood plasma proteins
100920836 (COL6A5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
VWA
VWA_2
Collagen
VWA_3
vWA_SIBA-E
VWA_CoxE
vWA-TerF-like
Motif
Other DBs
NCBI-GeneID:
100920836
NCBI-ProteinID:
XP_031796083
UniProt:
A0A7N4V7K1
LinkDB
All DBs
Position
5:complement(252481626..252586038)
Genome browser
AA seq
2652 aa
AA seq
DB search
MKMLLISLTLMMWFGVSAHQNPGPEFADVVFLVDSSDHMGSKSFPFVRTFLNKMISSLPI
EANKFRIGIAQYSDDLHQEFLLHTFRTKSAMLNHLKKNFGYIGGSLRIGNALERVHKTYF
SGPANERDKKLFPQILVVLASGHSEDDVVGPAEALRKDGVKIIALGLQDASEENLKAMAT
SQFHYNLRSVRNVGTFSENMTRIIKETIKHQESIQDVDDVVCERDSMADIVFLLDESFEI
RRSLEDLQRFLENITASMDVRGGCTRIGILRFSNKAEVVTSLGDPMSRADIVKAIRSLSV
KLGSAYVGKALKKAQEVFTQGRKAQGVRQIAVLITHRSSEDEVIEAAEDLLLQDVSIFAI
GIEGYNNTQLEQIVSYPPNRYISIQKSYADLEPYSVTFLNKLQYEVDYRTSIQHEQTERY
RTGCIETERADIYFLIDGSGSTKKYFHEIKNFMMEVTRMFIVAPEKVRFGAVQYSSTSQE
EFGIGKYSNKEDLGKAILNIRHMDKKTNTGAALNFMLQVIQNSRKKQSSKVPCHLLVLTD
GKSDDEVEEPAKRLREEDVIIHAIGVKGANIKELEEIAGSKDRVKFVYNFDSLKSIKDEV
VQIICQEKDCKDKKADIIFLVDSSKSIGASTFSTIKTFVKNVVDKTNVGIDQGHVGVIQF
SNVTKKEFGLTEYMTKNDIFDAIDRMNPIKNKTYVGKALEFVSDYFEPLNGGRSGVKKFL
ILITDGKSSDTVKERASDLRNKGVIILVVAVFQAKSSLLEDITGNTNLIYYVEKFDNQKL
LEDKLVFDMCTLYECKQFQMLDIVLVLDDSSSIGHNEHESMINFTKHLVNKADVGRDRVQ
FGALKYGDNPKVLFYLNTYHTKEGIIEGLKYKREGVNTYTAKALKSSHELFTEERGSRAK
RGVKQMLIVITDGESHDSDELKSTAQTLRDKNIIIYGVGVGSASEKELLDITNSKNNYFL
VDNFEKLKGLYLPFEKKACENSLVVCGIQKADVFFLCDGSDLVTHMDFGKMVHFLADIID
NFDVSPQNTRIGMSQLGSFDQEIIYLNDTLHKDERKGKILASLKRSGSPRLVDALHFVKD
TFVSGSRIMAGVPQILFVIVSGRPKGSISMVNKAVAKLRELGVCIVALGIGNVRNYELLH
ITHNPEKIITVPDFDNLKKEDVKKRVTREICRNCQQKSCFVDTVVGFDISTHRRGQTLFE
GQPHLESYLPGLLESISSLRGVSCVRKPQVSIAFKVNTDSHFESRFQIYEKTMMENLRHT
VVSGPSHLQVADLESLWSVFNYSEDHGKVMLIFSDGLQHGNNDLWRLEKKSDELRKRGLM
GLFIVALNTTSRLDEFSSIEFGKGFEYKTHLHIGMRDLRSKLTEYLDNIAERHCCCAFCK
CSGAPGPIGYQGSRGFKGSTGQKGGRGHRGEEGEPGTRGDSGPEGERGAQGCQGDRGLKG
VTGINGFKGEDGDYGIDGLNGEEGFHGTPGKKGEKGDPGSQGSMGIRGVPGIRGGKGFPG
DPGEPGRDNFSRGPAGSKGEQGRQGRRGQKGTDGRPNSRGKIGPTGQRGTHGPKGPSGSA
GPKGEDGSEGLRGIEGKIGDPGQKGEKGSLGNKGPQGPSGQAGVKGRPGKPGILGRKGQP
GIPGDKGILGLPGSRGIQGDVGKPSYGHRGRKGAKGSRGHPGDIGNQGDVGDRGTPGGPG
PKGFKGVTFGLGEKGEMGFPGSPGPAGPRGPKGMKGWPLSSECELIKFLRDHSPCWEDKC
PVYPTELVFALDVSKQRFEVVKNMTISILKDLKIRENNCPIGAKVAVLSYGSESRYLIRW
SDYSSKRQLLQKLSRMTFERSPYSRDLGDAMLFVARNVFKRTLPGPNVRRLTVFFSDNQS
PDITSIITATMEFSGLNIIPAVFVFNEMFGLEEAFQFDDTGTYQVIPVLSSHFSEPIKRL
RQCTLCYDKCFPNVCAEEQADRVYSYMDALFLVDSSRHVTGDEFEQMRSFLSSVLDSFEI
SDDPLHSDVGDRLALLSYSPGDFSRRRISTPVKEEFVFTTYNSKTLMKIYIQDSLKQLHG
EAFVAHALQWTTEKVFSDTEQSRKNKVIFIISAGENKENKNVLRKMALRAKCQGYAIFVI
SLGSTREEEVEDIASLPLDHHLIQLGRIHKPNLDYAVRFIKPFIHSVRRGFNKYPPITLE
RQCRLILSEPPLFLDGTIFTSGNYEISSGEPFLLNEEAQKQDHSSVLLENNQSDEVLYLR
DQMLIPEELLVKYPKTVDTGKVTTLTSENKIDNGHDLEPEEVDMNSGSTFMTLERPYHLV
DKPMDVEMVDMDLKPGSDYLIAGDDSRGEKEESSPTLEPSTQSLENIFVDVVFLLDSSRN
VESSEFQEIKEFLVSVLDYFYIAPDPVTSPIGDRVALLSYSPQGYRPNTEECPVHMEFDL
VTYNNVPQMKSYVREALQPLNGESFVGHALKWTIDNIFSDAPNLRKNKVIFVISAGETNY
LDQKALKEEALRARCQGYAIFVLSFGPTHNDKELEELASPPLDHHLVQLGRIHKPDFDYI
VRFIKPFLHSIRRAINQYPPADYAPKCINVTSSRPKKLQEEHAIFLLPERYEMEVENNDF
SDEYDSEEPHLVILEGNHSVKSGDIFDFFHELHHLFSTGEVSMNDQETPWSKVNTSFIED
EQKTNKDDGDVR
NT seq
7959 nt
NT seq
+upstream
nt +downstream
nt
atgaagatgctgctaatctcactgaccttgatgatgtggtttggagtatcagctcatcag
aaccctggtcctgagtttgccgatgttgtgttcctggtagatagttctgatcacatggga
agtaagtccttcccctttgtgagaaccttcctaaacaagatgatcagcagtctgcccatt
gaagccaacaagttccggattggtatcgcccagtatagtgacgatctacaccaggagttc
ctgctgcacaccttcaggaccaagtccgccatgttgaaccacctcaagaagaactttggc
tatattggcgggtccctgcgaataggcaatgctctagagagagtccacaagacctatttc
tcaggaccagcaaatgaaagagataaaaaactatttccccagattttagttgtcctggct
tcaggccactctgaggatgatgtggtaggacctgcagaagccttgcggaaagatggggtg
aaaatcattgcattgggattacaagacgcttcggaagaaaacctaaaagccatggccact
tctcagtttcactataaccttaggtcagtcagaaatgtgggcacattttcagaaaacatg
accaggattattaaggagacgataaagcaccaggaaagcatacaagatgttgatgatgtg
gtgtgtgaaagagattccatggctgacatcgtcttcctgttggatgaatcctttgagatc
agaagaagcttggaagaccttcagaggttcctggagaacatcacagcctccatggatgtg
agggggggttgtaccaggataggcatattgaggttcagcaacaaagcagaagtggtcact
tctctgggagatcctatgagccgtgctgacattgtaaaggccattcggagtctctctgtg
aagttagggagcgcctacgttgggaaagccttgaagaaggcccaagaagtctttacccaa
ggcaggaaggcccagggcgtgcgtcagatagccgtcctcatcactcacagatcatcagaa
gatgaggtaatagaagcagctgaggaccttctactgcaggatgtctccatctttgccatt
ggcattgaaggttataacaacactcagctggaacagatagtgtcttaccctccaaatcgt
tatatttccatccagaagagctatgcagacctagaaccttatagtgtcacttttctaaac
aagctccagtatgaagtagactacaggacgtccatccaacacgaacaaaccgaacgttat
aggacaggctgcattgaaacagaacgggctgatatctattttctcattgatggctcagga
agcactaaaaaatacttccacgaaatcaagaatttcatgatggaagtgacacgaatgttt
atcgttgccccagagaaggttcggtttggggcagttcagtattcatccacaagccaagag
gagtttggcattggcaaatactctaacaaggaggacttgggcaaagccattctcaatatc
cgacacatggataaaaaaacaaatacaggggcagccctgaatttcatgctccaagtaatc
cagaattccaggaagaagcagtccagcaaggtcccctgtcaccttctcgtcttgaccgat
ggaaagtctgatgacgaagttgaagaaccagccaagaggctaagggaggaagacgttatc
attcatgcaattggcgtcaaaggagctaatataaaagagctggaagaaatagcggggtca
aaggaccgagttaaatttgtatataattttgactccttaaaaagcataaaagatgaagtt
gtgcagatcatctgccaagaaaaagattgtaaagacaaaaaggcagacatcatatttcta
gtggatagttctaagagcataggagcctctaccttcagcacaataaagacatttgtgaaa
aacgtggtggacaagactaacgttggtattgatcaaggacatgttggtgttattcagttc
agcaacgttaccaagaaagaatttgggctcactgaatacatgaccaaaaatgacattttt
gatgcaattgacagaatgaatcctattaaaaataaaacctatgtaggaaaagcactggaa
tttgtttctgattactttgaacccttgaatggaggacgttctggtgtcaagaagtttctc
atcctcatcactgatgggaagtcaagtgacacagttaaagaacgagcttcagatcttcgg
aataaaggagtcattatcctcgtggttgcggtcttccaggcaaaatcatctctcctagag
gatatcactggaaatacaaacttgatttattatgttgagaaatttgataaccaaaaacta
cttgaagataagctggtttttgatatgtgcactctctatgaatgcaaacaatttcaaatg
ctagacattgtacttgtgctggatgattcttcgagtatcggccataatgagcatgaaagc
atgataaacttcacgaagcacttggtgaacaaggcggacgttggcagagaccgggttcaa
tttggagccctcaaatatggagataaccctaaagtcctcttctaccttaatacctaccac
accaaggaaggcatcattgagggacttaaatacaagagagagggagtaaatacttacacg
gccaaggctctgaagagctctcacgagctatttacggaggaacgtggcagtcgagccaag
agaggtgtaaagcagatgctcattgtgattactgatggggaatctcatgatagtgacgag
cttaagagcacagcccagacactgagagataagaacatcatcatctatggagtgggtgta
gggagtgcttctgagaaagaactcttagacataacaaactcaaaaaacaattacttcctg
gtagacaattttgaaaaactaaaaggactctacctcccctttgagaaaaaagcttgtgaa
aattcacttgttgtttgtggcatacaaaaagcagatgtctttttcctttgcgatggctct
gatttagtaactcatatggatttcggcaaaatggttcattttttggcagacatcattgat
aattttgatgtttcaccccaaaacacacgcattgggatgtcccagttaggcagctttgac
caagaaataatttacctgaatgatactttgcataaagatgagcggaaaggaaaaattttg
gcttctttgaagcgcagtggaagtcctcggctagtagatgcacttcacttcgtgaaggac
acatttgtttctgggagcaggatcatggctggagttcctcagatactgtttgtcatcgta
tctgggaggccaaagggtagcatctccatggtgaacaaggctgtggcaaaactgagagag
cttggggtgtgtatcgtggccttggggattgggaatgttcgaaattatgaattgctccat
atcacccacaaccctgagaagatcatcacagtgcctgactttgataacttgaagaaagaa
gatgtgaaaaaaagggtcacccgggaaatctgtcgcaactgtcagcaaaagagttgcttt
gtggatactgttgtgggctttgatatctcgacccatcggagaggccagaccttgtttgaa
gggcagccacaccttgaatcttaccttccaggcctcctagagtctatcagttccttaaga
ggtgtgagctgtgtgagaaaacctcaagtcagtatagcatttaaggtaaacactgatagc
cattttgaatccaggttccagatctatgaaaaaacaatgatggaaaatctgaggcacact
gtagtcagcgggccatctcaccttcaagtggctgatctagaatcactttggagtgtattt
aattactctgaagatcatggaaaggtgatgctcattttttctgatggtctccagcatggc
aataatgatctctggagacttgaaaagaaatcagatgaactcagaaaacgagggttgatg
ggtttgttcattgttgccctgaacactacttctcgtcttgatgagttttcaagcattgaa
tttgggaaaggatttgaatataagacacatttacacattggaatgagagacttgagaagc
aaactgacagaatacctggacaatattgcagaaagacattgctgctgtgccttctgtaag
tgttcgggagctccagggccaatcgggtaccaaggatcaagaggtttcaagggatcgaca
ggtcagaagggcggcagaggacacagaggggaagagggagagcctgggacaagaggagac
agtgggccagaaggagaaagaggtgctcaaggatgtcagggggacaggggccttaaggga
gtcacaggaataaatggatttaagggagaagatggagattatggaattgatggcctaaat
ggagaagagggcttccatggaactcctggaaagaagggagagaaaggtgacccaggatcc
cagggaagtatgggtatcagaggtgttcctggtatccgtggaggaaaaggatttccagga
gatcctggtgaacctggaagggacaacttctccagagggcctgcgggatctaaaggagag
caaggaagacaaggtcgaagaggacaaaaaggcacagatggcaggcctaactcaagagga
aaaataggaccaacaggccaaagaggaacccatggaccaaagggcccaagtggaagtgct
ggccctaaaggtgaagatggatctgaaggattaagaggaattgagggaaaaattggagac
cctggacagaagggagaaaaaggaagcctcggaaataaaggtcctcaggggccttctgga
caagcaggggttaaagggagacctggaaagcccggcatcttgggaaggaagggacaaccc
ggaattccaggtgataaaggaatcctaggacttcctggatctcgtggaatacagggagac
gtgggcaaaccaagttatggccaccggggaaggaaaggagcaaagggctcaagaggacac
ccaggagacattgggaaccagggtgatgttggtgatagaggaactccagggggacctgga
cctaaaggattcaaaggagtcacatttggcctaggtgaaaagggtgaaatgggttttcct
ggctctcctggacctgcagggccaaggggtcctaaaggcatgaagggatggcctctaagt
tcggaatgtgagctcattaaattcttgagggatcatagtccctgttgggaagacaaatgc
cctgtctacccaacagaattggtgtttgcattggacgtgtcaaaacagagatttgaagtt
gtgaaaaatatgaccatttccattttgaaggaccttaaaatcagggaaaacaactgtccc
ataggagcaaaggttgctgtcctttcttatggttctgaaagcagatatcttattcgctgg
tcagactattccagtaagcggcaactcctccagaaactctccagaatgacatttgaacga
tctccctactctagagatcttggtgacgccatgttatttgtggccaggaatgttttcaag
cgaaccttaccaggacctaacgtcaggaggctcactgtattttttagtgacaatcaatct
ccagatataacatcaatcatcactgccaccatggagttcagcggcctcaatatcattcca
gctgtatttgtttttaatgaaatgtttggtcttgaggaggccttccagtttgatgacact
ggtacatatcaggtcattccagttctatcctctcacttttctgagccaataaaaagactt
cgtcagtgcacactctgctatgataaatgctttccaaatgtttgtgccgaagagcaagct
gatcgagtatattcgtacatggatgccctcttcctcgtggacagctcccggcatgtgaca
ggagatgaatttgagcaaatgagatctttcctgagctcagtgcttgacagctttgagatt
tctgacgaccctttgcattctgatgtaggtgatcgactggctttgctaagctattcccca
ggggatttctccaggagaaggataagcactccggtgaaggaagagtttgtctttaccact
tataacagtaaaactctaatgaagatatacatacaggattccctcaagcaacttcatgga
gaagcctttgttgcccatgcccttcaatggacaacagaaaaggttttctctgacacagaa
cagtcgaggaaaaacaaggtcatctttattatatctgccggagaaaataaggaaaataag
aatgtcttaaggaaaatggccctgagagccaaatgccaggggtatgccatatttgtgatt
tctctgggatccacacgagaagaagaagtagaggacatagccagcctccctctggatcat
cacttgattcaacttggcagaattcataaacccaatttggactatgctgtgcggttcatt
aagccttttatccactcagttagacgaggattcaataaatacccccctataacattggag
agacaatgtagacttatcttgtcagaaccaccactttttcttgacgggactatttttact
tcaggcaattatgaaatctcctctggtgaaccttttttgttaaatgaagaggcacagaag
caagatcattcttcagttttactggaaaacaatcaaagtgatgaagtactctatcttcgc
gaccaaatgttaattccagaagaactattagtgaaataccctaaaacagtggacactgga
aaagtaacaactcttacttcagaaaataaaatagataatggccatgatttggagccagag
gaagtggatatgaactctggctctaccttcatgactttagaaagaccatatcatttagta
gacaaaccaatggatgtggagatggtggatatggatttgaagccaggctctgactatctg
atagcaggagatgatagtcgtggagaaaaagaagaatccagccccactttggagcccagc
acacagtctctggaaaacatttttgtggatgtggttttcctccttgactcttcacggaat
gtggaaagttctgagtttcaagaaataaaagaatttctggtctcggtgcttgactacttt
tacattgccccggacccggtgacctctcccataggagacagagtagccctcctgagttac
tccccccagggctataggcccaacacagaagagtgcccagttcacatggagtttgattta
gttacttacaacaatgtcccccaaatgaaaagctacgtgagggaagctcttcagccactg
aacggcgagtcttttgttggccatgccctgaagtggacaattgataatatcttctcagac
gcccccaacctgaggaaaaacaaagttatctttgtgatatctgctggagagaccaattat
ttggaccaaaaagccttaaaggaagaagctctgagagccaggtgccaaggctatgccatc
tttgtgttgtcctttggccccacacacaatgacaaagagctggaagagcttgccagcccg
cccctggatcatcacttggtccagctgggcagaattcataaacctgactttgactatatc
gtgaggttcatcaaaccctttctccattcaatcagacgtgcaatcaaccaatatccccct
gcagattatgctccaaaatgcattaatgtgacttcttctagaccaaagaaacttcaggaa
gaacacgccatattccttcttcctgagagatatgagatggaggtagaaaataatgacttc
tctgacgaatatgattctgaagagcctcatctggttattttagagggcaatcacagtgtt
aaatctggagacatttttgactttttccatgagctccaccatctgttttctactggggaa
gtctcaatgaatgatcaggaaacaccatggtccaaagtaaatacctctttcattgaagat
gaacaaaaaactaacaaagatgatggagatgtaagatga
DBGET
integrated database retrieval system
