Sarcophilus harrisii (Tasmanian devil): 100921038
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Entry
100921038 CDS
T02286
Symbol
VPS4A
Name
(RefSeq) vacuolar protein sorting-associated protein 4A
KO
K12196
vacuolar protein-sorting-associated protein 4
Organism
shr
Sarcophilus harrisii (Tasmanian devil)
Pathway
shr03250
Viral life cycle - HIV-1
shr03272
Virion - Hepatitis viruses
shr04144
Endocytosis
shr04217
Necroptosis
Brite
KEGG Orthology (KO) [BR:
shr00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
100921038 (VPS4A)
03272 Virion - Hepatitis viruses
100921038 (VPS4A)
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
100921038 (VPS4A)
09143 Cell growth and death
04217 Necroptosis
100921038 (VPS4A)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
shr04131
]
100921038 (VPS4A)
03400 DNA repair and recombination proteins [BR:
shr03400
]
100921038 (VPS4A)
Membrane trafficking [BR:
shr04131
]
Endosome - Lysosome transport
Endosomal sorting complexes required for transport (ESCRT)
ESCRT-III complex
100921038 (VPS4A)
DNA repair and recombination proteins [BR:
shr03400
]
Eukaryotic type
Check point factors
Other check point factors
100921038 (VPS4A)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA
Vps4_C
MIT
AAA_lid_3
TIP49
AAA_16
AAA_22
AAA_14
AAA_5
RuvB_N
IstB_IS21
AAA_25
AAA_17
DUF815
AAA_2
AAA_18
NPHP3_N
AAA_33
RNA_helicase
nSTAND3
AAA_24
PhoH
AAA_28
ResIII
Mg_chelatase
NACHT
AAA_7
Parvo_NS1
bpMoxR
AAA_30
ABC_tran
YhdB
Sigma54_activat
TPR_2
Motif
Other DBs
NCBI-GeneID:
100921038
NCBI-ProteinID:
XP_031805947
LinkDB
All DBs
Position
2:complement(44252133..44261545)
Genome browser
AA seq
439 aa
AA seq
DB search
MTTSTLQKAIDLVTKATEEDKAKNYEEALRLYQHAVEYFLHAIKYEAHSDKAKESIRGKC
MQYLDRAEKLKDYLRNKDKQSKKPVKEAPNDSKGSDSDSEGENPEKKKLQEQLMGAIVME
KPNIRWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAV
ATEANNSTFFSVSSSDLMSKWLGESEKLVKNLFELARQHKPSIIFIDEVDSLCGSRNENE
SEAARRIKTEFLVQMQGVGNNNDGTLVLGATNIPWVLDSAIRRRFEKRIYIPLPEEAART
QMFRLHLGNTPHSLTEANILELARKTDGYSGADISIIVRDSLMQPVRKVQSATHFKKVRG
PSRTNPGVMIDDLLTPCSPGDPGAIEMTWMDVPSDKLLEPVVCMSDMLRSLATTRPTVNA
EDLLKVKKFSEDFGQEAVS
NT seq
1320 nt
NT seq
+upstream
nt +downstream
nt
atgacaacttcaactctccagaaggccattgatctggtgacgaaggcgacggaggaggac
aaagccaagaactatgaggaggcattgcggctctaccaacatgccgtggagtatttccta
catgcaatcaaatatgaggcacacagtgacaaagccaaggagagcatccggggcaagtgt
atgcagtacctggaccgagctgagaagctgaaggattacttacggaataaagacaagcaa
agcaaaaagcccgtaaaagaagctccaaatgacagcaagggaagtgacagtgacagtgaa
ggagagaatcctgagaaaaagaaactgcaagaacagctgatgggtgccattgtcatggag
aagcccaacattcggtggagtgatgtggctggcctggagggagccaaggaagcgctcaaa
gaagctgtcatcttgccaattaagttcccgcacttattcacaggcaagcgcaccccctgg
agagggatcctgctcttcggacctcctggcacagggaaatcttacctggcaaaggctgtg
gccacagaagccaacaactccaccttcttctctgtgtcctcctcagatctgatgtccaaa
tggctgggggagagcgagaagcttgtcaaaaacctctttgagctggccaggcagcacaaa
ccctccatcatcttcatcgatgaggtcgactccctctgcggatctcggaatgaaaatgag
agcgaggctgctcgtaggatcaagacggagttcctggtgcagatgcagggggtcggcaac
aacaatgacggcaccttggtcctgggggccacaaacatcccgtgggtgttggattcagcc
attcgaaggaggtttgaaaaacgcatttacatccccctgcctgaggaagcggcccggacc
cagatgttccggctgcatctcgggaacaccccccacagcctcacggaggccaacatcctc
gagctagcccggaagaccgacggctactcgggagccgacatcagcatcatcgtgcgggat
tctctcatgcagcctgtgcgcaaagtgcagtcggcaacacacttcaaaaaggttcggggc
ccttctcgcaccaaccctggagtcatgatagatgaccttctgaccccctgctctccagga
gaccctggagccattgagatgacttggatggatgtacccagtgacaagctgttggagcct
gtagtatgcatgtccgacatgcttcggtctctggccaccacccgacccaccgtcaatgca
gaagatcttctgaaagtgaagaaattctcagaggactttggacaggaagccgtgtcctag
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