Sarcophilus harrisii (Tasmanian devil): 100921090
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Entry
100921090 CDS
T02286
Symbol
DDX39B
Name
(RefSeq) spliceosome RNA helicase DDX39B isoform X3
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
shr
Sarcophilus harrisii (Tasmanian devil)
Pathway
shr03013
Nucleocytoplasmic transport
shr03015
mRNA surveillance pathway
shr03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
shr00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
100921090 (DDX39B)
09122 Translation
03013 Nucleocytoplasmic transport
100921090 (DDX39B)
03015 mRNA surveillance pathway
100921090 (DDX39B)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
shr03019
]
100921090 (DDX39B)
03041 Spliceosome [BR:
shr03041
]
100921090 (DDX39B)
Enzymes [BR:
shr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
100921090 (DDX39B)
Messenger RNA biogenesis [BR:
shr03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
100921090 (DDX39B)
Spliceosome [BR:
shr03041
]
Complex C
Other components
EJC/TREX
100921090 (DDX39B)
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
100921090 (DDX39B)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
100921090
NCBI-ProteinID:
XP_003768951
Ensembl:
ENSSHAG00000003209
UniProt:
A0A7N4PL29
LinkDB
All DBs
Position
4:285473618..285488892
Genome browser
AA seq
428 aa
AA seq
DB search
MAENDVDNELLDYEDDEVETAAGGDGAEAPAKKDVKGSYVSIHSSGFRDFLLKPELLRAI
VDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMC
HTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALA
RNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCR
KFMQDPMEIFVDDETKLTLHGLQQYYVKLKDNEKNRKLFDLLDVLEFNQVVIFVKSVQRC
IALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAF
NYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQDRFEVNISELPDEIDI
SSYIEQTR
NT seq
1287 nt
NT seq
+upstream
nt +downstream
nt
atggcagaaaatgatgtggacaatgaactcctggattatgaagatgatgaagtggagaca
gcagctgggggagatggagctgaggcccctgcaaagaaagatgtgaaaggctcctatgtc
tccatccacagttctggcttccgtgactttctacttaagccagaactgctccgagccatt
gtagattgtggctttgagcatccatctgaagtccagcatgagtgtatacctcaggccatc
ttgggaatggatgtcttgtgccaggccaagtcaggcatgggaaagacagctgtgtttgta
ttggctacgctgcagcagctggagccagtcactggtcaggtttctgtgctggtgatgtgt
cacacccgggagctggcttttcagatcagcaaagaatatgagcgtttctccaaatacatg
cctaatgtcaaggtggcggtgttttttggtggtctgtcaataaaaaaggatgaagaggtg
ctgaagaagaactgtccacacattgtcgtggggaccccaggccgtatcttagccctggcc
cgaaataagagcctcaatctcaagcatattaaacattttatcttggatgagtgtgacaaa
atgctcgaacaactcgacatgcgtcgggatgtccaggaaattttccgcatgaccccccat
gagaagcaggtcatgatgttcagtgccaccctgagcaaagagatccgccctgtctgccgc
aagttcatgcaagacccaatggagatcttcgtggatgatgagacgaagctgacgctgcac
gggctgcagcagtactacgtgaagctgaaggacaatgagaagaaccgaaagctcttcgat
ctcctggatgttctggagttcaaccaggtggtgatcttcgtgaaatctgtgcagcgctgc
attgccctggcccagctcctagtggaacagaatttcccagctattgccattcatcgtggg
atgccccaagaggagaggttgtcccggtatcaacaattcaaggatttccagcgtcgaatc
cttgtggccactaacctgtttggccgaggcatggatattgagcgagtaaacattgccttc
aactatgacatgccagaggactcagatacctacttacatagggtggctagggcaggccgg
tttggtacaaaaggtttggccatcacgtttgtatcagatgaaaatgatgccaaaatcctc
aatgatgtccaggatcgctttgaggttaacatcagtgaactgcctgatgaaatagacatt
tcttcctacattgagcagactcggtag
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