Sarcophilus harrisii (Tasmanian devil): 100921787
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Entry
100921787 CDS
T02286
Symbol
SMG7
Name
(RefSeq) protein SMG7 isoform X4
KO
K14409
protein SMG7
Organism
shr
Sarcophilus harrisii (Tasmanian devil)
Pathway
shr03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
shr00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
100921787 (SMG7)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
shr03019
]
100921787 (SMG7)
Messenger RNA biogenesis [BR:
shr03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Other surveillance factors
100921787 (SMG7)
mRNA cycle factors
Common to processing body (P body) and stress granule
100921787 (SMG7)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EST1_DNA_bind
EST1
TPR_2
Motif
Other DBs
NCBI-GeneID:
100921787
NCBI-ProteinID:
XP_012403177
Ensembl:
ENSSHAG00000013147
LinkDB
All DBs
Position
4:72393256..72484329
Genome browser
AA seq
1160 aa
AA seq
DB search
MYEHLEDFPSLEKPYSTWTFMLQILHYGGEQLWQAEVLKADMTDSKLGPAEVWTSRQALQ
DLYQKMLVTDLEYALDKKVEQDLWNHAFKNQITTLQGQAKNRANPNRSEVQANLSLFLEA
ASGFYTQLLQELCTVFNVDLPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYICQHCLVH
LGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKF
PFPAASTNLQKALSKALESRDEVKTRWGVSDFIKAFIKFHGHVYLSKSLEKLSPLREKLE
EQFKRLLFQKAFNSQQLVHVTVINLFQLHHLRDFSNETEQHSYSQDEQLCWTQLLALFIS
FLGILCKCPLQNEYQEESCSAYPLPAVKVSMDWLKLRPSVFQEAVVDERQYIWPWLISLL
NSFQPHEEDLSSTNATPLPEEFELQGFLALRPSFRNLDFSKGHQGITGDKEGQQWRIRQQ
RLISIGKWIADNQPRLIQCENEVGKLLFITEIPELLLEDSSEAKENLVLQEASLVESLPV
EGSPGLKSVLSTGRSVSTNCDTTEKPMVTFKENIKPREVNREQGRSYPPKEVRRDYSKGI
AVTKSDGKKDNNKRKNETKKCTLEKLQETGKQSVAVQVKSQTELRKTPVSEARKTPVTQT
PSQASNSQFIPIHHPGAFPPLPSRPGFPPPAYVIPPPVAFPMGSGYTFPAGVSVPGTYLQ
PTAHSPAGNQVQAGKQSHIPYSQQRPSGPGPMNQGPQQSQPPSQQSLSSLPAQPTAQSSG
QLQVQALAQQQQSPTKAVQALGKSPPHHSGFQQYQADASKQLWNPPQVQGPLGKIMPVKQ
PYYLQTQDSLKLFEPSLQPPVMQQQPLEKKMKPFTMEPYNQNSSEVKVPEFYWDPSYNMA
DNRAVMTQQANVDRRSKRPPGVFPSEQDPVPRMPFEKSLLEKPSELMSHSSSFLSLTGFS
LNQERYPNSSMFNEVYGKNLSTSGKAEVNPSMTHQETSLYSLFEGTPWSPSLPASSDHST
PASQSPHSSNPSSLPSSPPTHNHNSVPFSNFGPIGTPDNRDRRIADRWKTDKPAMGGFGF
DYLPATSSASETSWHQASTPSGTWTGHGPSMEDSSAVLMESLKSIWSSSMMHPGPSALEQ
LLMQQKQKQQRGQGTLNPPH
NT seq
3483 nt
NT seq
+upstream
nt +downstream
nt
atgtatgagcatctggaggacttcccgtctctagagaaaccttattcaacttggactttt
atgttgcaaatcctccactatggtggtgaacaactttggcaggcagaagtcctgaaggct
gacatgacagattccaagctgggtccagctgaggtctggacatctaggcaggctctgcag
gacctgtaccagaaaatgctagttactgatctggagtatgctttagacaagaaagtggaa
caggatctctggaatcatgcctttaagaatcagatcacaacactacagggccaggcaaag
aatcgagcaaatcctaatcggagtgaagttcaagcaaatctttctctgtttttagaggca
gctagtggcttctatactcagttgttacaggagctgtgcacagtatttaatgtagattta
ccttgccgtgtgaagtcttcccagttgggaattatcagcaataaacagacgcataccagc
gccatagtgaagccacagtctagctcctgctcatatatctgccagcactgcctcgttcac
cttggagacattgcccgctatagaaaccagaccagccaggcagagtcctactataggcat
gcagctcagcttgtcccctccaatggtcagccttacaatcaattggctattttagcttct
tccaaaggagaccatctgaccacaattttctactactgcagaagcattgctgtgaagttt
cctttcccagctgcctccactaatcttcaaaaagcactttctaaagcactggaaagccgg
gatgaggtgaaaactagatggggtgtttctgacttcatcaaagcctttattaaattccat
ggtcacgtgtatctgagcaagagtttagagaagctaagccctcttcgagagaaattggag
gaacagtttaagagattgctattccaaaaagcattcaactctcaacagctagttcacgtc
actgtcattaacctgtttcaacttcatcatctacgtgactttagcaatgaaactgaacaa
cacagttatagccaggatgagcaactgtgttggacgcagctattggccctctttatctct
tttcttggcatcctgtgcaagtgccctcttcagaatgagtatcaggaggaatcatgcagt
gcatatccccttcctgctgtcaaggtctcaatggactggctcaaacttagacccagtgtc
tttcaggaggctgtggttgatgaaagacagtacatttggccctggctgatctctcttcta
aacagcttccaaccccatgaagaagatctctccagcacaaatgctactccacttccagaa
gagtttgagctacagggattcttagcactaagaccttctttcaggaacttagatttctcc
aaaggccaccaagggattacaggagacaaagagggacaacagtggcgaattcgccaacaa
cgtttgatctccataggcaaatggattgctgataatcagccaaggctgattcaatgtgaa
aatgaggtagggaaattgttgtttatcacagagatcccagagttattactagaagattcc
agtgaagccaaagagaaccttgttcttcaagaagcatccctcgtggagtccctgcctgtg
gaagggagcccagggctaaaatccgtgctatctacgggcagaagtgtgagcaccaactgt
gacaccacggagaagcccatggtcaccttcaaggagaacattaagcctcgagaggtgaac
agagaacaaggaagaagctacccacccaaagaggtgagaagggactatagcaaaggcata
gcagttactaaaagtgatggaaagaaggacaacaacaagaggaaaaatgagaccaagaaa
tgcaccttagagaagttgcaggaaacgggaaagcagagtgtggcggtgcaggtaaaatct
caaactgaattaaggaagaccccagtgtctgaagctagaaaaacacctgtaactcagacc
ccaagtcaggcaagcaattcccagttcatccctatacatcacccaggagccttccctccc
cttcccagtcgaccagggttcccacccccagcatatgttatcccccctcctgtggcattc
cctatgggctcaggttacaccttcccagctggtgtttctgtcccaggaacctatcttcag
cctacagctcactctccagcaggaaaccaggtgcaagctgggaaacagtcccacattcct
tacagccagcaacggccctctggaccagggccaatgaaccagggacctcaacagtcacag
ccaccttctcaacaatccctttcatctttaccagctcagccaacagcacagtcttcaggc
caattgcaggtccaggccctggctcagcaacagcagtctcccacaaaggctgtgcaggct
ttggggaaaagccctcctcatcactctggattccaacagtatcaggcagatgcttccaaa
cagctgtggaatccacctcaggtccaaggtccgttagggaagatcatgcctgtgaagcag
ccctactacctgcagacccaagactccctgaaactgtttgagccgtccttgcaacctcct
gtaatgcaacagcagcctctagagaaaaaaatgaagcctttcaccatggagccatataac
cagaattcctccgaagtcaaagtcccagaattttactgggatcccagttacaacatggcc
gataaccgagcagtgatgacccagcaagccaatgtggaccgtcgcagcaaaaggcccccc
ggagtctttccttcggagcaggaccctgtgcccaggatgccattcgagaagtccctgttg
gagaaaccctcagagctcatgtctcattcttcttctttcctatccctcactggcttctct
ctcaatcaggaaagatacccaaatagcagcatgttcaatgaagtatatggtaaaaaccta
agtaccagtggaaaagcagaagttaatccctcaatgacccatcaagaaacatcattgtac
tctctctttgaagggacaccgtggtctccatcccttcctgccagttcagatcattcaaca
ccagccagccagtctcctcactcttctaacccgagtagtctgccaagttctcctccaaca
cacaaccataattctgttccattctccaattttggacccatcggaactccagataatagg
gataggaggattgcagatcgttggaaaacagataaaccagctatgggtggatttggcttt
gattatcttccagccacatcctcagcctctgagacaagctggcaccaggccagcactccg
agtggaacctggacaggccatggcccttctatggaggattcttccgctgttcttatggaa
agcttaaagtctatctggtccagttccatgatgcaccctggaccttccgccctggagcag
ctgttgatgcagcagaagcagaagcagcagcgtggacaaggcaccctgaacccgccgcac
tga
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