Sarcophilus harrisii (Tasmanian devil): 100921930
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Entry
100921930 CDS
T02286
Symbol
ABCA1
Name
(RefSeq) phospholipid-transporting ATPase ABCA1
KO
K05641
ATP-binding cassette, subfamily A (ABC1), member 1
Organism
shr
Sarcophilus harrisii (Tasmanian devil)
Pathway
shr02010
ABC transporters
shr04148
Efferocytosis
shr04975
Fat digestion and absorption
shr04979
Cholesterol metabolism
shr05417
Lipid and atherosclerosis
Brite
KEGG Orthology (KO) [BR:
shr00001
]
09130 Environmental Information Processing
09131 Membrane transport
02010 ABC transporters
100921930 (ABCA1)
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
100921930 (ABCA1)
09150 Organismal Systems
09154 Digestive system
04975 Fat digestion and absorption
100921930 (ABCA1)
04979 Cholesterol metabolism
100921930 (ABCA1)
09160 Human Diseases
09166 Cardiovascular disease
05417 Lipid and atherosclerosis
100921930 (ABCA1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
shr02000
]
100921930 (ABCA1)
Transporters [BR:
shr02000
]
ABC transporters, eukaryotic type
ABCA (ABC1) subfamily
ABCA1, 2, 3, 4, 7, 12, 13 subgroups
100921930 (ABCA1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_tran
ABC2_membrane_3
R1_ABCA1
AAA_21
DrrA1-3_C
AAA_23
Motif
Other DBs
NCBI-GeneID:
100921930
NCBI-ProteinID:
XP_012398572
Ensembl:
ENSSHAG00000007490
UniProt:
G3VZP0
LinkDB
All DBs
Position
1:complement(332171325..332318825)
Genome browser
AA seq
2258 aa
AA seq
DB search
MAFWSQLGLLLWKNFTFRRRQTCQLLLEVAWPLFIFFILISVRLSYPPYEQHECHFPNKA
MPSAGTLSWVQGIICNANNPCFRYPTPGESPGVVGNFDESILSRLFSDARRLLLYSQKDT
SMKDTQKLLGTLQRLGTFNSSMKLQDFLVDNETFSGFLQHNLTMPYPAVEEVLDTDIGLQ
QALLNGYKWKLKDLCKESNLTIKLHNQKTGGLCDLPKEKLDAAEQVFSSNIDLLKPLLKG
IDSHSVLPNQELVETMKTMLDSLGKLAKELSSMKSWSDMRQEVLFLTNMNGSSSSTQIYQ
AVSRIMCGHPEGGGLKIKSLNWYEDNNYKALFGGNSTEEEVTNFYDNSTTPYCNELMKNL
ESSPLSRIIWKALKPLLVGKILYTPDTPATRTVMSEVNRTFQNLGVFHDLKGMWEEISPK
IWTFMENSQEMDLIRTLLDDKINSNLWGQHLNGLNWTVSDIAAFLAKYPEDVQIASGPVY
TWREAFNETNRAIQTIARFMECVNLDKLEPIATEVRLINKSMELLDERKFWAGIVFTGIA
PDSVELPHHVKYKIRMDIDNVERTNKIKDAYWDPGPRADPFEDLRYIWGGFAYLQDVVEQ
AIIRTLTGSEENTGIYVQQMPYPCYVDDIFLRVMSRSMPLFMTLAWIYSVAVIIKGIVYE
KEARLKETMRIMGLDNGILWFSWFISSLIPLLVSAGLLVLILKLGNLLPYSDPSVVFLFL
SVFAVVTILQCFLISTLFSRANLAAACGGIIYFTLYLPYVLCVAWQDYVGFSLKLFASLL
SPVAFGFGCEYFALFEEQGIGVQWDNLFESPLEEDGFNLTTSISMMLFDTFLYGVMTWYI
ESVFPGQYGIPRPWYFPFTKSYWFGEKSDENGHLGSRQKATSEICMEEEPSHLRLGVSIQ
NLVKVYRDGMKVAVDGLALNFYEGQITSFLGHNGAGKTTTMSILTGLFPPTSGTAYILGK
DIRSELSTIRQNLGVCPQHNVLFDMLTVEEHIWFYARLKGLSEKCVKEEMEQMVLDVGLP
HKLKTKTSQLSGGMQRKLSVALAFVGGSKVVILDEPTAGVDPYSRRGIWELLLKYRQGRT
IILSTHHMDEADILGDRIAIISHGKLCCVGSSLFLKNQLGTGYYLTLVKKDVDSSLSSCR
NSSSTVSYLKKEDSVSQSSSDAGLGSDHESDTLTIDVSAISNLITKHVSEARLVEDIGHE
LTYVLPYEAAKEGAFVELFHEIDDRLSDLGISSYGISETTLEEIFLKVAEDSGVDAETSD
GTLPARRNRRAFGDRQSCLRPFTEDDAFDPNDSDVDPESRETDLLSGMDGKGSYQVKGWK
LTQQQFVALLWKRWLIARRSRKGFFAQIVLPAVFVCIALVFSLIVPPFGKYPSLELQPWM
YNEQYTFVSNDAPEDAGTQKLLDALTKSPGFGTRCMEGQSIPDMPCEGGEDKWTTASVPE
SVMDIFWKGNWTMKNPSPACECSSDKIKKMLPVCPAGAGGLPPPQRIQNTSDILQNLTGR
NISDYLVKTYVQIIAKSLKNKIWVNEFRYGGFSLGTSNVRGLPPSNEINVAIDQVKKVFQ
LTKDSSADRFLNSLGNFMTGLDTKNNVKVWFNNKGWHAIGSFLNVINNAILRANLPEGKN
PNNYGITAFNHPLNLTKQQLSEVALMTTSVDVLVSICVIFAMSFVPASFVVFLIQERVSK
AKHLQFISGVKPVIYWLSNFVWDMCNYVVPATLVIIIFICFQQKSYVSSTNLPVLALLLL
LYGWSITPLMYPASFVFKIPSTAYVVLTSVNLFIGINGSVATFVLELFTNNKLNNINDIL
KSVFLIFPHFCLGRGLIDMVKNQAMADALERFGENRFVSPLSWDLVGRNLFAMAVEGVVF
FLITVLIQYRFFIKPRRVIAKLPPLNDEDEDVRRERQRILDGGGQNDILAIKELTKVYRS
KRKPAVDRICVGIPPGECFGLLGVNGAGKSSTFKMLTGDTSVTKGDAFLNKNSILSDIQE
VHQNMGYCPQFDAITELLTGREHVEFFALLRGVPEKEVGKVGDWAIRKLGLVKYGEKYAG
NYSGGNKRKLSTAIALIGGPPVVFLDEPTTGMDPKARRFLWNCALSVIKEGRSVVLTSHS
MEECEALCTRMAIMVNGRFRCLGSVQHLKNRFGDGYTIVVRIAGSNPDLKPVQEFFGVAF
PGSVLKEKHRNMLQYQLPSSLSSLARIFSILSQNKKRLHIEDYSVSQTTLDQVFVNFAKD
QSDDDHLKDLSLHKNQTVVDVAILKSFLQDDKVRESYV
NT seq
6777 nt
NT seq
+upstream
nt +downstream
nt
atggctttttggtctcagctgggactactgctttggaagaactttacttttcgaagaaga
caaacatgtcaattattgcttgaagtggcctggcctctgtttatcttcttcatattgatt
tctgttcgactcagctatccaccctatgaacaacatgaatgccactttccaaacaaagct
atgccatctgcaggaacactttcttgggttcaggggattatctgcaatgctaacaacccg
tgtttccgctatccaacccctggtgaatctcctggtgttgttggaaacttcgacgagtcc
attctttcacggctgttctcagatgctcggagactcctcttatacagtcagaaagatacc
agtatgaaggatacacagaagcttttgggaactttgcagagactggggactttcaactca
agcatgaaacttcaggatttcctggtggacaatgaaaccttctctggatttttgcagcac
aacctcaccatgccctatccagctgtggaggaggttctggacactgatattggtctccaa
caggctcttttaaatggctataagtggaagctgaaagacctatgcaaagaatcaaactta
acaattaaacttcacaaccagaaaacaggaggactttgtgatctgccaaaagaaaaacta
gatgcagcagaacaagtcttctcttccaacatagaccttctgaaacctctcctgaaagga
atagactcccattctgtcctgccaaaccaggagctggttgaaacaatgaaaactatgtta
gatagtcttggaaagctagccaaagagttatccagcatgaagagctggagtgacatgaga
caagaggtgttattcctgaccaacatgaacggtagcagttcctccacccagatctaccag
gcagtgtctcgaatcatgtgtggccatcctgaaggtggaggactgaagatcaaatccctt
aattggtatgaggacaacaactacaaagccctatttggaggaaatagtaccgaagaggag
gtgacaaatttctatgacaattctacaactccttattgcaatgaattgatgaagaatctg
gaatctagtcctctttcccgaattatctggaaggctctaaagcctctccttgttggaaag
atcctatatacccctgatactccagccacaagaacagtcatgtctgaggtgaataggact
tttcagaacttgggtgtcttccatgacctgaaagggatgtgggaagagatcagccccaaa
atctggacattcatggaaaatagccaggaaatggatctcatccggactctgttggatgat
aaaatcaacagcaatctttggggacagcacttgaatggtttaaactggacggtttcggac
attgcagcctttttagctaagtacccagaagatgtccaaatagccagtggtccagtgtac
acctggagagaagcttttaatgagacaaatcgagcaatccagacaattgctcgattcatg
gagtgtgtcaacctagacaaacttgagccaattgctacggaagttcgactgatcaacaag
tctatggagttactggatgaaaggaagttctgggctggcatagtgttcactggcattgct
cctgatagtgttgaactacctcaccatgtcaaatacaagatccggatggatattgacaat
gtggaaaggacaaacaagatcaaggatgcgtactgggaccctggtcctcgggcggatccc
tttgaagatctgcgctatatctgggggggctttgcatacctgcaagatgtggtggagcaa
gccattatccggacattgacaggctctgaggagaacactggcatttatgtgcagcagatg
ccttatccttgttatgtcgatgacatatttctgcgggtgatgagccgctcaatgcctctc
ttcatgaccctggcttggatatactctgtggctgtgatcattaaggggatcgtgtatgag
aaggaggcccgactgaaagagaccatgaggatcatgggtttggacaacggcatcctttgg
tttagctggttcattagcagtctcatccctctccttgtgagcgcagggctactggtatta
atcctgaagctaggaaacttgctgccctacagcgaccccagcgtggtcttcctgtttctc
tccgtctttgctgtggtaaccatcttgcagtgcttcttgatcagtacgctcttctccaga
gccaatttggctgcagcttgtggtggaatcatctacttcacactctacctgccctacgtc
ctgtgtgttgcttggcaggactacgtgggtttctctctgaaactttttgctagccttctg
tctcctgtagcctttgggtttggttgtgagtactttgccctctttgaggagcagggcatt
ggagtgcagtgggacaatcttttcgagagccctctagaggaagatggcttcaatcttact
acctcaatctccatgatgctgtttgataccttcctatatggtgtgatgacctggtatatt
gagtctgtttttccaggtcaatatggaattcccaggccctggtatttcccttttaccaag
tcttactggtttggtgagaaaagtgatgaaaatggtcatcttggttccaggcaaaaagca
acttcagaaatctgcatggaagaagaacccagccacttgcgcttgggggtttccattcag
aacctggtaaaggtttatcgagatggcatgaaggtggcagtggatggccttgcactgaat
ttctatgaagggcagatcacatcttttctgggacataatggagctgggaaaaccaccacc
atgtccatcttgactggcttattccccccaacctcgggtactgcttacatccttgggaaa
gatattcgttcagagctgagcactataaggcagaacctgggggtctgtcctcagcataat
gtgctttttgacatgctaacagtggaagaacacatctggttctatgcccgcttaaaaggg
ctgtcagaaaagtgtgtaaaggaagagatggagcagatggtgttggatgtgggtttgcca
cacaaactgaaaactaagacgagtcagttgtctggaggaatgcaaagaaaactgtctgtg
gctctggccttcgttggaggatctaaagtggtcattttagatgaaccaacagctggggtg
gacccttactctcgcagagggatatgggaactgcttctgaaatatcgtcaaggtcgcacc
atcatcctctccactcatcacatggatgaggcagatatactgggtgacaggattgccata
atttctcatgggaagttgtgttgtgtgggctcctctttgtttttgaagaatcagctggga
acagggtactatctgaccctggtcaagaaggatgtggattcctccctcagttcctgtaga
aacagcagcagcacagtgtcttacctgaaaaaggaggacagcgtttctcagagcagctct
gatgcaggtctgggcagtgaccatgaaagtgatactctgacaatagatgtttctgccata
tccaacctcatcacaaagcatgtctcagaggctcggctagtggaggacattgggcatgaa
ttaacctacgtgctcccctatgaagctgccaaagaaggagcatttgtagagcttttccat
gaaatcgatgaccgactctctgacctaggcatttcgagttatggcatctcagagaccaca
ttggaggagatattccttaaagtagctgaagacagtggtgtagatgcagagacctcagat
ggaaccttacctgcgagaaggaacagacgtgcctttggggaccgccagagctgtctgcgc
ccatttactgaagatgatgcttttgatcccaatgactcggatgtagacccagaatcccga
gagacagacctcctcagcggcatggatggcaaaggctcctaccaggtgaaaggttggaaa
ctcacccaacagcagtttgtggcccttttgtggaagaggtggctgattgccaggcgtagc
aggaagggattttttgctcagatcgttctgccagcagtatttgtctgcattgcccttgta
ttcagtctgattgttcctccttttggcaagtaccccagtctggaactgcagccgtggatg
tacaatgaacaatacacatttgtcagcaatgacgctccagaagatgcaggcactcaaaaa
ctcttggatgctttgaccaagagccctggttttggtactcgttgtatggaaggacaatca
attccggatatgccctgtgagggtggtgaggataaatggactactgcctctgtccccgag
tctgtgatggacattttctggaaagggaactggacaatgaagaacccttcacctgcctgt
gagtgcagtagtgacaagataaagaaaatgctccctgtgtgtcccgctggtgcaggtgga
ttgcctcctcctcaaagaatacaaaatacatctgacatccttcagaatttgactggaaga
aacatttcagactatctggtgaagacctatgtccagatcatagcaaaaagcctaaagaac
aagatctgggtaaatgaatttaggtatggtggattctcactgggtaccagtaacgtgcgt
ggattacctccaagtaatgaaattaatgttgccatcgaccaagtaaagaaagtctttcag
ctgaccaaggatagttctgcagatcgatttctcaatagcttaggaaacttcatgacagga
ctggacaccaaaaataatgtcaaggtatggttcaataacaagggttggcatgccattggt
tccttcctgaatgtcatcaataatgccatcctcagagccaacctgccggagggaaagaat
cccaacaactacggcattacagcttttaatcaccctctgaatctgaccaagcagcagctt
tccgaagtggccctgatgactacttcagtagatgtccttgtttccatctgtgtaatcttt
gcaatgtccttcgtcccagccagctttgttgtgtttttgatccaggagcgcgtcagcaaa
gctaaacatctacaattcatcagtggtgtaaaacctgtcatctactggctttctaacttc
gtctgggatatgtgcaattatgtggtacctgccaccttagtcatcatcatcttcatctgc
ttccagcaaaagtcttatgtgtcttccaccaaccttcctgtcctggctcttctcctctta
ctttatgggtggtcaataacccctctcatgtacccagcctcctttgtgttcaagatcccc
agcacagcttacgtggtccttactagtgtgaacctcttcattgggattaatggaagtgtg
gccacttttgttttagagctcttcactaacaataagctcaacaatattaatgatattttg
aagtctgtgtttctgatattccctcacttctgtctgggccgagggctaattgacatggtg
aaaaaccaggcaatggctgatgcactagaaaggtttggagaaaaccgttttgtctctcca
ctctcctgggacttggtgggaaggaatctctttgctatggccgtggaaggggtggtcttc
ttcctcatcactgtactgatccagtacaggttcttcatcaagcccagacgcgtaattgca
aaacttcctcctctaaatgatgaggatgaggatgtgagaagagaaaggcagaggatattg
gatggtggtggacagaatgatattctagcaatcaaagaactaactaaggtctatagaagc
aagaggaaacctgcagttgacaggatctgtgttggcatccctcctggagagtgctttggg
cttctgggagtgaatggggctggaaaatcatcaacctttaaaatgttaactggagacacc
agtgtgacaaaaggagatgcttttctcaataaaaatagtatcttgtcagacatccaagaa
gtccatcagaacatgggctattgccctcagtttgatgctatcactgagctgttgacagga
agagagcatgtggaattctttgcgctcttgagaggagtccctgagaaagaagttggcaag
gttggcgactgggcaattcgaaaactaggtcttgtgaaatatggagaaaaatatgctggg
aattacagtggtggcaacaagcgaaaactttcaactgctattgctttgattggagggcct
ccagtggtgtttttggatgagccaaccactggcatggatccaaaagcccgccgcttctta
tggaattgtgccctaagtgttatcaaggagggaagatctgtagtgcttacgtctcacagc
atggaagaatgtgaagctctctgtaccagaatggcaatcatggtcaatgggaggttcaga
tgtcttggcagtgtccagcacttaaagaacaggtttggagatggctatacaatagttgta
cgaatagcaggctcaaatcctgacctgaagcctgttcaggaattctttggagtagccttt
ccaggaagtgtcctcaaagagaaacatcggaacatgcttcaataccagcttccatcttcc
ctgtcttccctggccaggatcttcagcatcctttcccagaacaaaaagagactccacata
gaagattattctgtttctcagacaacacttgaccaagtatttgtaaactttgcaaaggac
caaagtgatgatgaccacttaaaggacctgtcattgcacaaaaatcaaactgttgtagat
gttgcaattctcaaatcttttctgcaagatgacaaagtgagagaaagctatgtctaa
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integrated database retrieval system
