Sarcophilus harrisii (Tasmanian devil): 100922223
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Entry
100922223 CDS
T02286
Symbol
COL6A1
Name
(RefSeq) collagen alpha-1(VI) chain
KO
K06238
collagen type VI alpha
Organism
shr
Sarcophilus harrisii (Tasmanian devil)
Pathway
shr04151
PI3K-Akt signaling pathway
shr04510
Focal adhesion
shr04512
ECM-receptor interaction
shr04820
Cytoskeleton in muscle cells
shr04974
Protein digestion and absorption
shr05165
Human papillomavirus infection
Brite
KEGG Orthology (KO) [BR:
shr00001
]
09130 Environmental Information Processing
09132 Signal transduction
04151 PI3K-Akt signaling pathway
100922223 (COL6A1)
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
100922223 (COL6A1)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
100922223 (COL6A1)
09142 Cell motility
04820 Cytoskeleton in muscle cells
100922223 (COL6A1)
09150 Organismal Systems
09154 Digestive system
04974 Protein digestion and absorption
100922223 (COL6A1)
09160 Human Diseases
09172 Infectious disease: viral
05165 Human papillomavirus infection
100922223 (COL6A1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
shr04147
]
100922223 (COL6A1)
00536 Glycosaminoglycan binding proteins [BR:
shr00536
]
100922223 (COL6A1)
Exosome [BR:
shr04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
100922223 (COL6A1)
Glycosaminoglycan binding proteins [BR:
shr00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
100922223 (COL6A1)
Hyaluronan
Extracellular matrix or blood plasma proteins
100922223 (COL6A1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
VWA
Collagen
VWA_2
VWA_3
Motif
Other DBs
NCBI-GeneID:
100922223
NCBI-ProteinID:
XP_031824163
UniProt:
G3W4B8
LinkDB
All DBs
Position
4:complement(463292462..463325011)
Genome browser
AA seq
1039 aa
AA seq
DB search
MRLSGGGRSGGGSRLLSLLLQGCLLWGWAAAQDISQKAIAFQDCPVDLFFVLDTSESVAL
RLKPYGSLVDQVKAFTNQFIDNLVDRYYRCDRNLVWNAGALHYSDAVEVIQGLTPMPSGR
DGLKASVSRVKYIGKGTHTDCAIKKGIEELLIGGSHQRENKYLIVVTDGHPLEGYKEPCG
GLEDAVNEAKHLGIKVFSVAITPDHLEARLSIIATDHTYRRNFTAADWDLNRDSTELIKE
TIDTIIKMIKDNVEQVCCSFECQPARGPPGPRGDPGHEGERGKPGLPGEKGEAGEPGRQG
DLGPVGYQGMKGEKGTRGEKGSRGPKGYKGEKGKRGIDGIDGQKGETGYPGLPGCKGSPG
FDGAQGPPGPKGDPGSFGPKGEKGTPGDDGEAGRPGNTGPPGEEGQPGEPGPPGEKGEQG
DEGNPGPDGPPGERGGPGERGPQGTPGTRGPRGDPGEPGPQGDQGREGPVGVPGDPGEAG
PVGPKGYRGDEGPPGLEGPRGTPGLTGPPGDPGLMGERGEDGPPGNGTEGFPGFPGYPGN
RGPPGINGSKGYPGVKGDEGEAGDPGEDNNDISTPGIKGAKGYRGPEGPPGPPGPPGPPG
PDECEILDIIMKMCSCCECKCGPIDILFVLDSSESIGLQNFEIAKDFIVKVIDRLSRDEL
VKFEPGESHAGVVQYSHNLMQEHVSLSDNNIQNAHDLKEAVKKLQWMAGGTFTGEALQYT
RNNLLPPTQNERIALVITDGRSDIERDTTPLTVLCGADVVVFSLGIKDLFGGTASTDQLN
EISCQGQTGSPGKRTGISLVKENYAELLDDNFLKNITTQICIDKKCPDYTCPIRFTAPAD
IMVLLDSSASVGRHNFETTKRFVKRLAERFLTAQKTDPSYDIRFSAVQYSGRDQQSPDTG
SLQFLQNYTVVSRNIDSMSFMNDATDVNAALRYVTSFYRRASSGDRTKKVLLFTDGNSQG
VTENAIEKAAQEAQKAGIEIYVMVVGRQVNEPNIRALLKGRNAQYEVAYGERHLFRVPDY
QSLLQGVLYQTVSRKISLP
NT seq
3120 nt
NT seq
+upstream
nt +downstream
nt
atgaggctgagcggcggcggcaggagcggcggcgggagccggctgctctccttgttgctc
caaggatgtctgctgtggggctgggcggcggcgcaggatatctcccagaaagccatcgcc
ttccaagactgccccgtggatctgttcttcgtcctggacacttcggagagcgtggccttg
cggctgaagccctatgggagcctcgtggatcaagtgaaggccttcaccaaccagtttatt
gacaacttggtggacaggtactaccgctgcgaccgcaacctcgtgtggaacgccggagcg
ctccactacagcgacgccgtggaggtcatccaagggctgaccccgatgcccagcgggcgg
gacggcctgaaggccagcgtgagcagggtgaagtacatcggcaaaggcacccacacggac
tgcgccatcaagaaggggatcgaggagctgctcatcgggggatcccaccagagggagaac
aagtaccttattgtggtgacggacggccaccccctggaaggttacaaggagccctgtggc
gggctggaagatgctgtcaatgaagctaagcacctgggcatcaaggtgttctccgtggcc
atcacacctgatcacctggaggccaggctgagcatcattgccacagaccacacatacagg
aggaactttaccgcggctgactgggatctcaaccgggactcgactgagctgatcaaggaa
accattgacaccatcatcaagatgattaaagacaatgtggaacaagtgtgctgttctttt
gagtgccagcctgcccgaggccctcctgggccacgtggtgaccctggacatgagggagaa
agaggaaagcccgggcttcctggagagaagggagaagctggagagccgggaagacaaggt
gatcttggacctgtgggttaccaaggaatgaagggagaaaaaggaacgcggggagaaaag
ggctcacgaggacctaaaggttacaagggtgaaaagggcaagcgaggcatcgatggcatc
gacgggcagaagggtgaaactggataccccggcctgccagggtgcaagggatccccagga
ttcgacggagcccaaggacctccggggcccaagggagacccaggttcttttggcccaaaa
ggagaaaagggcacgcctggagatgatggagaggctggaaggcccggaaatactggaccc
ccaggagaagagggccagcccggagaaccaggaccccccggagagaagggggagcaaggc
gatgagggaaatcctggccccgacggccctcctggagaaaggggcggccccggagaacga
ggaccacaaggaaccccgggcacgcgggggccacggggagacccaggtgagccggggcca
caaggtgaccaaggccgagaaggaccagtgggagtccctggagacccgggggaggccgga
ccagtcggacccaagggctaccgaggagatgaaggtcccccaggactcgagggtcccaga
ggaactccaggtctcacagggccccccggagaccctggtctgatgggtgaaaggggtgaa
gatgggccccccgggaacgggacagaaggcttccctggctttccgggatacccaggaaac
aggggcccccctggcataaatggcagcaaaggttatcccggggtcaagggcgatgaaggc
gaggctggcgatcctggcgaagataacaacgacatctcgaccccaggcattaagggagcc
aaaggttaccgaggcccagaaggcccccccggacccccaggacccccagggcctccagga
ccagatgaatgcgaaatattggacatcatcatgaagatgtgctcttgctgtgagtgtaag
tgcgggcccatcgacatcctctttgtgctggacagctcggagagcatcgggctccagaac
tttgagatcgccaaagacttcattgtcaaggtcatcgacaggctgagcagggacgagttg
gtgaagtttgaacccggggagtcccacgcaggcgttgtccagtacagccataacctaatg
caggagcacgtgagcctgagcgacaacaacatccagaatgcccacgacctgaaagaggcc
gtgaagaaactgcagtggatggccggaggcaccttcaccggggaggcccttcagtacacc
aggaacaacctgctgccccccacccagaacgagcgtatcgccctggtcatcacagacggg
cgctcggacatcgagagagacacgacgcccctgaccgtgctctgtggggccgatgtcgtg
gtgttctccctgggcatcaaggatctcttcgggggcactgccagcacggaccagctgaat
gaaatctcttgccaaggccagacaggctccccagggaaaaggacgggcatctccctcgtc
aaggagaattacgccgagctcctagacgacaacttcctgaaaaacatcaccacccaaatc
tgcatcgataagaagtgcccagactacacgtgtccgatccggttcacggccccggcggac
atcatggtcctgctggacagctcggccagcgtgggcagacacaacttcgagaccaccaag
cggttcgtgaagcgcctggccgagcgcttcctcacggcccagaagaccgacccctcctac
gacatccgcttctcggccgtccagtacagcggccgcgaccagcagagcccggacacgggc
tccctgcagttcctccagaactacaccgtggtctcccgcaacatcgacagcatgagcttc
atgaacgacgccaccgacgtgaacgccgccctccgctacgtgacctccttctaccggcga
gcgtcctccggggaccgcaccaagaaggtcctcctcttcaccgacgggaactcgcagggg
gtcaccgagaacgccatcgagaaggcggcgcaggaagcccagaaggccggcatcgagatc
tacgtgatggtggtgggccggcaggtcaacgagcccaacatccgcgccctgctcaagggg
agaaatgcccagtacgaagtggcctacggcgagcgccatctcttccgcgtgcccgactac
cagtccctcctccagggagtactctaccaaacagtttccagaaagatttccctcccctga
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