Sarcophilus harrisii (Tasmanian devil): 100922395
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Entry
100922395 CDS
T02286
Symbol
COL12A1
Name
(RefSeq) collagen alpha-1(XII) chain isoform X1
KO
K08132
collagen type XII alpha
Organism
shr
Sarcophilus harrisii (Tasmanian devil)
Pathway
shr04974
Protein digestion and absorption
Brite
KEGG Orthology (KO) [BR:
shr00001
]
09150 Organismal Systems
09154 Digestive system
04974 Protein digestion and absorption
100922395 (COL12A1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
shr00535
]
100922395 (COL12A1)
Proteoglycans [BR:
shr00535
]
Extracellular matrix (ECM) proteoglycans
Others
100922395 (COL12A1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
fn3
VWA
Ig_DSCAM-DSCAML_C
VWA_2
Pur_ac_phosph_N
Collagen
Interfer-bind
DUF4998
CRLF2-like_D2
Copine
Toxin_R_bind_N
DUF4992
Motif
Other DBs
NCBI-GeneID:
100922395
NCBI-ProteinID:
XP_031820478
LinkDB
All DBs
Position
4:233964585..234106099
Genome browser
AA seq
3124 aa
AA seq
DB search
MKIRLHSAFAAICAAFLLSSIEAEVEPPSDLNFKIIDENTVHMSWARPIDPIVGYRVTVD
PTTDGPTKEFTLSASTTETLLSDLIPEIEYVVTITSYDEVEESVPVIGQLTIQTGGPGKQ
GEKKPGQSEIQKCSLSAWTDLVFLVDGSWSVGRNNFKYILDFIAALVSAFDIGEGKTRVG
VVQYSSDTRTEFNLNQYYQRKDLLAAIKKIPYKGGNTMTGDAIDYLIKNTFTESAGARAG
FPKVAIIITDGKSQDEVEIPARELRNIGVEVFSLGIKAADAKELRQIASPPSLKHVFNVA
NFDAIVDIQNEIISQVCSGVDEQLGELVSGEEVVESPSNLIATDVSSKYVKLSWDPSPSP
ITGYKVLLTPMIPGSKQQALSVGPQTTSLNVRDLSADTEYQISVYAMKGLTSSEPISIME
KTQPMKVQVECSRGVDIKADIVFLVDGSYSIGIANFVKVRAFLEVLVKSFEISPNRVQIS
LVQYSRDPHTEFTLKKFTRVEDIIDAINTFPYRGGSTNTGKAMTYVREKIFVASKGSRSN
VPKVMILITDGKSSDAFRDPAIKLRNSDVEIFAVGVKDAVRSELEAIASPPPETHVFTVE
DFDAFQRISFELTQSICLRIEQELKVIKKKSYVPPRNMKFSDLTSNSFKVNWSPAGEHVF
TYHITYKEAADGEALTVVEPASSTSVVLDHLKPETLYLVNVTAEYEDGFSDPLTGEETTL
EVKGIPRNLKVTDETTDSFKITWTQAPGKVLRYRIVYRSLPSGARQEVTVPANERRKTLE
NLTPDTKYEVSVIPEYFSGPGFPLIGNAATEEVRGNPRDLRVSDPTTSSMKLFWSAAPGK
VKQYLVTYTPLAGGETQEATLRGDTTSTQLKGLEPGTRYSLSVTALYASGAGDALSGEGT
TLEERGSARDLITKDITDTSIGAYWTSAPGMVRGYRVTWRSLYDDIEAGEKNVPGDEIHT
VIENLQPETKYKISIFATYTSGEGNPLNGEATTELSQNARTLRVDDETETTMRVTWQPAP
GKVVHYRVVYRPRGGGRQMVAKVPPTVTSTVLKRLQPQTTYDITVLPIYKSGEGKHRQGS
GTTLSKFKSPRNLKTSDSTMSSFRVTWEPAPGEVKGYKVTFHPTGDDQRLGELVVGPYDN
TVVLEELRAGTTYKVNVFGMFDGGESSPLIGQEMTTLSDTTVMPILSSGMECFTRAEADI
VLLVDGSWSIGRANFKTVRSFISRIVEVFEIGPKRVQIALAQYSGDPRTEWQLNAHKDRK
SLLEAVANLPYKGGNTLTGMALNFIWQNNFRPQAGMRPRARKIGVLITDGKSQDDVEAPS
KRLKDGGVELFAIGIKNADETELKMIATDPDDTHAYNVADFDSLSRIVDDLTVNLCNSVK
GPGDLEAPSNLVISERTHRSFRVSWTPPSDSIDRYKVEYYPVSGGKRQEFYVSRLETSTV
LKDLKPETEYVVNVYSVVEDENSEPLKGTETTLPVPVVSLNIFDVGPTNMRVQWQSVGGA
TGYLLSYVAVNATVPTSPKEMPVGPSVTDMQLVDLIPNTEYAVTIKATLYDLTSDPVTAR
EVTLPLPRPRGLKLTDVTHSSMNVIWDPAPGKVRKYIVRYKTEEDDDVKEVEVDRSRTKT
SLGDLISQTLYEVNVVAVYDEGESPPVTAQATTRPVPAPINLRLTEVTPDSFRGTWDHGA
SDVSLYRVTWSPYGATEKMETILNGDENTLVFENLNPNTLYEVSVTAIYPDESESDDLTS
SERTLPAIPVTTLAPKSGPRNLQVYNATSKSLTVKWDPASGRVQKYRITYQPSTGDGPEQ
TTTIGGRQNSVVLQKLKPDTPYSITVSSLYSDGEGGRMTGRGKTKPLNTVKNLRVYDPST
STLNVRWDHAEGNPRQYKVFYAPTAGGPEELVTTPGNTNYVILRNLQPDTPYTVTVVPVY
TEGDGGRTSDTGRTLVRGLARNVQVYNPTPNTLDVRWEPAPGPVQQYRIVYSPQTGTRPS
ESIVVPGNTRTVQLERLTPDTPYSVNIVAVYSDGEGNPSPAQGQTLPRGGPRNMKVFGET
TNSLSVTWDHADGPVQHYRIIYSPTVGDPIDEYTTVPGRRNNVILQPLQTDTPYKITIVA
VYDDGDGGHLVGNGRTVGLLPPQNIHITDEWYTRFRVSWDPSPSPVLGYKIVYKPVGSNE
PMEVFVGEVTSYTLHNLNPSTTYDVNVYAQYDSGLSIPLTDQGTTLYLNVTDLTTYQVGW
NTFCVKWAAHRAATSYRLKLNPADGTRGQEITVRGSETSHCFKDLSPDTDYGVTVFVQTP
NLEGPGVSVKEHTTVKPTEAPTEPPTPPPPPTIPPARDVCKGAKADIVFLTDASWSIGDD
NFNKVVKFIFNTVGAFDQISPAGIQVSFVQYSDEVKSEFKLNTYADKAQALGALQNIRYR
GGNTRTGKALTFIKEKVLTWESGMRKAVPKVLVVVTDGRSQDEVKKAALVIQQSGFSVFV
VGVADVDYNELANIASKPSERHVFIVDDFESFEKIEDNLITFVCETATSSCPLIYLDGYT
SPGFKMLEAYNLTEKNFATVPGVSLESGSFPSYTAYKLQKNAFVNQPTVELHPDGLPPSY
TIILLFRLLPESPSDPFAIWQITDRDYKPQVGVVADPSSKTLSFFNKDVRGEIQTVTFDT
DEVKTLFYGSFHKVHIVVTSKSVKIYIDCYEIVEKDIKEAGNITTDGYEILGKLIKGERK
SAAFQIQNFDIVCSPVWTSRDRCCDIPSRRDEAKCPAFPNSCTCTQDSVGPPGPPGPAGG
PGAKGPRGERGINGAIGPPGPRGDSGPPGPQGPPGPQGPNGLSIPGEQGRQGVKGDAGEP
GLPGRSGSPGLPGPPGPMGPPGDRGFTGKDGAMGPRGPPGPPGSPGSPGVTGPSGKPGKP
GDHGRPGPSGLKGEKGDRGDIASQNMMRAVARQVCEQLINGQMSRFNQILNQIPNDYHSN
RNQPGPPGPPGPPGSAGARGEPGPGGSPGFPGTPGLQGPPGDRGLPGEKGERGIGSQGPR
GLPGPPGPQGESRMGPPGSTGSRGPPGPPGRPGNSGIRGPIGPPGYCDSSQCASIPYNGQ
GYPEPYVPESGPYLPEREPFIVPMEPETTADEYEDYGADMPPEGYPPQMRQKRSLSRNLR
KLRP
NT seq
9375 nt
NT seq
+upstream
nt +downstream
nt
atgaagattcggctacattcagcatttgctgctatatgtgcagccttcctcttatcttcg
atagaggcagaagttgaaccaccttcagacttgaattttaaaattatagatgaaaatact
gttcacatgtcatgggcaagaccaattgatcccatagtgggttacagagtaacagtggat
cctacaactgatgggcctactaaagaatttactctttctgctagtactaccgaaacttta
ttgtcagaccttatacctgagatagaatatgttgtgacaataacttcttatgatgaagtg
gaagaaagtgtaccagttataggccaattgacaattcaaacaggtggtccaggaaagcaa
ggggagaagaaaccaggacaaagtgagatacaaaaatgctctctcagtgcctggacagat
ttagttttcctagtcgatggctcatggagtgtggggagaaataatttcaaatacatctta
gacttcattgctgcccttgtatctgcttttgacattggggaaggaaagacaagagttggt
gttgtccaatacagttctgataccaggacagaatttaacttaaatcagtattaccaaagg
aaagatcttcttgctgctattaaaaaaataccatacaaaggtggaaatacaatgacagga
gatgctattgattatttaattaaaaatacttttacggaatcagctggagcaagggctggc
ttccctaaagtagcaattattatcacggatggaaaatctcaggatgaagtggaaattcca
gcaagagaacttcggaatattggtgttgaagttttctcattgggtatcaaagctgcagat
gcaaaagaactcagacaaattgcatccccaccttcacttaaacatgttttcaatgtggct
aactttgatgcaattgtagatattcagaatgaaataatttctcaggtgtgctcaggtgtt
gatgaacagttgggtgaattggtcagtggagaagaagttgtcgaatctccttcaaatctg
attgccactgatgtatcatcaaaatatgttaagctcagttgggatccatctcctagtcct
ataacaggctataaagtacttctcacaccaatgataccaggaagtaagcaacaagcttta
agtgtgggtcctcagactacctctctgaatgtaagagacctttctgcagatacagaatac
cagattagtgtctatgcaatgaaaggactgacatccagtgaacccatttcaataatggaa
aagacccagccaatgaaagttcaagtggaatgctcccgtggtgtggatataaaagctgat
attgtgtttttagttgatggctcctatagcattggaattgccaactttgttaaagttaga
gcctttttggaagtccttgtgaaaagctttgaaatttcacccaacagggtacagatcagt
cttgtccaatatagccgggatccccatactgagtttactttgaaaaaatttaccagagtt
gaagacattattgatgctatcaacacatttccctaccgaggtggatctacaaatactggc
aaagccatgacttatgtgagagaaaaaatatttgtggctagtaaaggatctcggagcaat
gtgccaaaggtcatgattcttattactgatgggaaatcatcagatgcctttagagaccct
gctataaaactcaggaattcagatgttgagatttttgcagttggtgtcaaggatgcagtt
cgttctgaattggaagctattgcctccccacctcctgaaactcatgtgttcacagtagaa
gattttgatgccttccagaggatatcatttgaacttactcagtctatctgccttagaatt
gaacaagaactgaaagttataaagaaaaagtcttatgtgcctcccaggaatatgaaattt
tctgatttgacttcaaacagtttcaaagtgaactggtctccagcaggagagcatgttttt
acatatcacattacatacaaggaagctgctgatggtgaagctctcactgttgtagagcct
gcttctagtaccagtgttgtcctagaccatttaaagccagaaacattgtacttggtcaat
gtaacagcagaatatgaggatggtttcagtgatcccttaactggagaagaaacaactttg
gaagtgaaaggtataccacgcaacttaaaagtgacagatgaaactactgatagctttaaa
attacatggactcaagccccagggaaagttttaagatatcgaattgtgtacagatcactt
ccaagtggagcaagacaagaagtcacggttccagcaaacgaacgaagaaagacacttgag
aacttgaccccagatacaaaatatgaagtgtctgttatccctgagtacttttctggacct
gggttcccactgattggaaatgcagctactgaagaagttcgaggaaatccaagagattta
agagtttctgaccctacaacatcatctatgaagttattttggagtgcagcaccaggaaaa
gtcaaacaataccttgtaacatatactccactggcaggaggtgaaactcaagaggcaacc
ttgaggggtgatacaaccagcacccaactgaagggcttagagccaggtacaagatactcc
ttgtcagtgactgcgttgtatgcttctggagctggagatgccctttctggagaaggaaca
accctggaagaacgaggttctgctcgagacttgattactaaagacatcactgacacttct
attggagcatactggacatctgctccagggatggttcgtggttacagagttacatggaga
tcactttatgatgatattgaggctggagagaagaatgttcctggagatgaaattcacact
gtgatagaaaatctacagccagagaccaaatataagatttcaatatttgccacctacacc
agtggggaggggaatcctttgaatggagaagctacaaccgaactgtctcaaaatgctagg
actctgagggttgatgatgagactgaaacaacaatgagagtcacatggcaaccagcacct
ggaaaagttgtgcactatcgtgttgtgtatcggcctcgtggaggaggaagacaaatggtg
gccaaagtgccacccacagtcacatcaactgtgttaaaacgacttcaacctcaaactaca
tatgatattacagtgcttccaatttacaaatcaggagaaggaaagcacaggcaaggatca
ggaaccacattatccaaattcaaatcacccaggaacctcaaaacatctgactcaaccatg
tcaagcttccgagtcacttgggagccagccccaggagaagtaaaaggctacaaggtcact
ttccatcctacaggagatgatcagaggcttggggaattagttgttggtccctatgacaat
actgttgttttggaggaacttagggcaggcacaacctataaagtaaatgtttttggaatg
tttgatggaggagaaagttcaccactaattggacaggaaatgacaactctttcagataca
actgtcatgccaattttatcttcaggcatggagtgtttcaccagagcagaagctgacatc
gtgctactggtagatggttcttggagtattggtcgggctaattttaaaactgtcaggagt
tttatttcacgtattgttgaagtcttcgagattggccccaaaagagtacaaattgccctt
gctcagtatagtggggatcccagaacagaatggcagttaaatgctcataaagacagaaaa
agcctattggaggcagtggccaacctaccatacaagggaggcaatacactgacagggatg
gctttgaattttatttggcaaaataactttaggccacaggctggcatgagacccagagct
cgcaaaattggtgttctcataactgatgggaaatcacaggatgatgtagaagcaccttca
aagagactaaaggatggaggagtggaactttttgctattggtattaaaaatgcagatgag
actgaattaaagatgattgcaactgacccagatgatactcatgcctacaatgtggctgac
tttgactcactttctaggattgtggatgacctcactgttaacttgtgcaatagtgtcaaa
ggtccaggagacttggaagcaccttccaatctagttatatctgagagaacccatcgttcc
tttagagtgagctggacacccccatcggacagtatagacagatacaaggtggaatactat
ccagtttctggagggaaacgccaagaattttatgtgagtcgcctggaaactagtacggtg
cttaaggatctaaagcctgaaacagaatatgtagttaatgtgtattctgtagtggaagat
gaaaatagtgaacccttgaagggcactgaaacaaccttgccagtccctgttgtttccctg
aatatttttgatgttggaccaactaacatgcgggtgcaatggcagtcagttggtggagct
actggttacttgttgtcctatgtagctgtcaatgccacagtgcccacaagtcccaaagag
atgcctgttggaccatcagtgacagatatgcagctggttgatctcatccccaatactgaa
tatgctgtaactatcaaagcaacattgtatgatctcaccagtgatccagtcactgcccgg
gaagtaactttacctttacctcgtcctagagggttgaaactcacagatgttacccatagc
agtatgaatgtcatctgggatcctgctcctggcaaagtacgaaaatatattgtcaggtat
aaaacagaggaagatgatgatgtaaaagaggtggaagtagatagatcaaggacaaagacc
tctcttggtgatctgatttcacaaacactctatgaagtcaatgttgtagcagtgtatgat
gaaggagaatctcctccagtgactgctcaagcaactacacgtcctgttcctgcgccaatt
aatctgaggcttacagaagttacaccagatagtttcagaggaacatgggatcatggagct
tcagatgtatctctctatagagtgacatggtcaccttatggagccacagaaaaaatggag
actattttaaatggtgatgaaaatactctggtttttgaaaatctgaacccaaacactctc
tatgaagtttcagttactgccatttatcctgatgaatcagaaagcgatgaccttaccagc
agtgagaggacattgcctgcaatacctgtaacaactctagctccaaaaagtggtccacga
aatcttcaggtatataatgcaacatccaaaagtttgactgttaagtgggatcctgcaagt
ggccgtgtgcagaaatacagaatcacttaccagccttccacaggggatgggcccgaacaa
acgaccacaataggaggaaggcaaaatagtgtggttctacaaaagttgaaaccagatacc
ccatactcaattacagtctcatctctatattctgatggtgaaggaggaaggatgactggc
cgaggcaagaccaaacctctcaataccgtgaagaacctaagagtctatgatccttctacc
agtacactgaatgttcgatgggatcatgctgagggcaatcctcgtcagtataaagttttc
tatgcaccaactgcaggtggtccggaagaattggtaacaactccagggaacacaaattat
gtgattctgaggaatctgcaacctgacacaccttatacagttacagtagttccagtttat
actgaaggggatggtggacgaacttcagacactggaagaacattggtaagaggcctggca
agaaatgtccaagtatacaatcctacgccaaatacccttgatgttcgctgggaacctgca
cccggacctgtccagcagtaccgtattgtgtattctccccagactggcacaaggccttca
gaatctattgtagtaccaggaaatacccgcacagtgcagttggagcgcctgactccagat
acaccctattctgtgaacatcgtggctgtgtattcagatggcgagggaaatcccagccct
gctcagggccaaacattgccacgaggtgggccaagaaacatgaaagtctttggagagaca
accaatagcctttctgtaacatgggatcatgctgatggacctgttcaacactacaggatc
atttattctcctactgttggtgatccaattgatgaatataccacagtacctggaagaaga
aataatgtcatattacaacccctgcaaacagatactccatataaaattaccattgttgct
gtttatgatgatggggatggtggacatttggtaggaaatggacgaactgttggactactt
cctcctcagaacatacatatcactgatgaatggtataccagattcagggtttcctgggat
ccttcaccctctccggttcttggttataaaattgtatataaaccagtaggttctaatgaa
cccatggaagtatttgttggggaagtgacatcatacactctacacaatctgaaccctagt
accacgtatgatgtgaatgtttatgctcagtatgattctggtctgagcataccactgact
gatcaaggcaccacattatacctaaatgtgactgatctgacaacttaccaagtaggatgg
aataccttttgtgttaaatgggctgctcaccgggctgccacctcatacagactgaagtta
aatccagcagatggaacaagagggcaagaaatcacagtgcgtggatcagagaccagccac
tgttttaaggacctttcaccagatactgattatggggtcactgtctttgttcaaacacca
aatcttgagggtcctggtgtttctgtcaaagaacatacaacggttaagccaacagaagcc
ccaacagagcctccaacacctcctcctcctcctacaatcccaccagctcgagatgtatgc
aaaggtgccaaggcagatattgtattcttgactgatgcctcttggagtattggtgatgat
aattttaacaaagttgtgaaatttatcttcaatactgtgggagcttttgatcaaatcagt
cctgctggaattcaggtttcatttgtccaatacagtgatgaggtaaaatctgagttcaaa
ttgaatacctatgctgacaaggctcaagctctcggagctcttcaaaatattcgttacaga
ggtggaaatacaaggacaggcaaagccttgacatttatcaaggagaaggttttgacttgg
gaaagtggtatgagaaaagctgtccctaaggttcttgtagtagtcacagatggtcggtca
caggacgaggtcaagaaggctgctttggtcatacaacagtccggtttcagtgtttttgta
gttggtgtagctgatgtagattataatgaacttgcaaacattgccagcaaaccaagtgaa
cgccatgtttttattgtggatgactttgaatcttttgagaagattgaagataacctaata
acttttgtttgtgaaactgccacttcaagttgccctcttatttatttagatggatacact
tcaccaggtttcaagatgctggaggcttataatttaacagagaagaactttgctactgta
ccgggagtatccctggagtctgggtctttccccagctatacagcctataaattacaaaag
aatgcctttgtgaatcagcctacagtagagctacatccagatggcttacccccatcatac
acgattatcctgttattccgacttcttccagaaagccccagtgatccatttgcaatttgg
caaataacagacagagattataagcctcaagttggagtggttgcagacccttccagcaag
acattgtcattctttaacaaagatgtaaggggtgagattcagacagtaacttttgacaca
gatgaagtgaagacgctgttttatggaagttttcacaaggttcatattgtagtaacttca
aaaagtgttaagatttacatagactgctatgaaattgtagagaaggatatcaaggaagct
ggtaacatcacaactgatggttatgaaattcttggaaagcttattaaaggtgaaaggaaa
tcagctgcgttccaaatccagaattttgacatagtatgcagcccagtgtggactagtaga
gacagatgctgtgacatcccttcaaggagagatgaagcaaaatgcccagcttttccaaat
tcttgcacatgtactcaggacagtgttggacctcctggaccacctggaccagcgggtggt
cctggtgctaaaggccccagaggagagagaggaatcaatggagcaattgggcccccaggt
cctcgtggtgattcaggtccccctggtccccagggtcctccaggtcctcagggacccaat
ggactctcaattccaggagaacaaggtcgacaaggagtgaaaggtgatgcaggagagcca
ggacttccaggccgatcaggatcaccaggtttacctggtccaccaggtcccatgggaccc
ccaggagatagaggctttacaggaaaagatggtgcaatgggacccagaggccctcctgga
ccaccgggcagcccaggatctccaggagtcacaggtccaagtggaaaaccaggaaaacct
ggagatcatggaagaccaggcccatctggattgaaaggagagaaaggtgacagaggagac
attgcttcccaaaacatgatgcgtgcagttgcaagacaagtctgtgaacaactgatcaat
ggccagatgagtaggtttaaccaaatactgaaccagattccaaatgattatcattcaaac
cgcaaccagcctggaccccctggcccaccaggaccaccaggaagtgctggagcaagagga
gaacctggacctggaggaagcccagggttcccaggcactccagggttgcagggaccacca
ggggatcgaggactgccaggagaaaagggggaaagaggcattggatcacaaggaccccga
ggtttgcctggaccaccaggtccacaaggagaatccagaatgggtccaccaggatctaca
ggctcaagaggtccccccggtccccctggtcgtcctggaaattcaggtatccggggtcca
attggtccccctggatactgtgattcatcccagtgtgccagcattccttacaatggtcaa
ggatacccagagccttatgtgcctgaaagtggaccctatctccctgagcgtgagcccttc
atagtaccaatggagccagaaacgacagcagatgagtatgaggactatggagctgatatg
ccaccagaaggataccctcctcagatgcgtcagaaaagatcattatcgaggaatctgagg
aaactaagaccatga
DBGET
integrated database retrieval system
