Sarcophilus harrisii (Tasmanian devil): 100922471
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Entry
100922471 CDS
T02286
Symbol
DDX42
Name
(RefSeq) ATP-dependent RNA helicase DDX42
KO
K12835
ATP-dependent RNA helicase DDX42 [EC:
5.6.2.7
]
Organism
shr
Sarcophilus harrisii (Tasmanian devil)
Pathway
shr03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
shr00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
100922471 (DDX42)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
shr03041
]
100922471 (DDX42)
Enzymes [BR:
shr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
100922471 (DDX42)
Spliceosome [BR:
shr03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
100922471 (DDX42)
Complex B
100922471 (DDX42)
Complex C
U2 SnRNP specific factors
100922471 (DDX42)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
ERCC3_RAD25_C
Motif
Other DBs
NCBI-GeneID:
100922471
NCBI-ProteinID:
XP_031821747
Ensembl:
ENSSHAG00000012896
UniProt:
G3WI59
LinkDB
All DBs
Position
4:complement(323239254..323278070)
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AA seq
943 aa
AA seq
DB search
MNWNKGGPGTKRGFGFGGFAIAAGKKEEPKLPQQSHSAFGATSSSAGFGKSAPPQLPSFY
KIGSKRANFDEENAYFEDEEEDSSNVDLPYIPAENSPTRQQFHSKSADSDSDDDPLEAFM
AEVEDQAARDMKRLEEKDKERKNVKGIRDDIEEEDDQEAYFRYMAENPTAGMVQEEEEDN
LEYDSDGNPIAPSKKVIDPLPPIDHSEIDYPPFEKNFYNEHEEITSLTPQQVIDLRHKLN
LRVSGAAPPRPGSSFAHFGFDEQLMHQIRKSEYTQPTPIQCQGVPVALSGRDMIGIAKTG
SGKTAAFIWPMLIHIMDQKELDPGDGPIAVIVCPTRELCQQIHAECKRFGKAYNLRSVAV
YGGGSMWEQAKALQEGAEIVVCTPGRLIDHVKKKATNLQRVSYLVFDEADRMFDMGFEYQ
VRSIASHVRPDRQTLLFSATFRKKIEKLARDILIDPIRVVQGDIGEANEDVTQIVEILHS
GPSKWNWLTRRLVEFTSSGSVLLFVTKKANADELANNLRQEGHNLGLLHGDMDQSERNKV
ISDFKKKGIPVLVATDVAARGLDIPSIKTVINYDVARDIDTHTHRIGRTGRAGEKGVAYT
LLTPKDSNFAGDLVRNMEGANQHVTKELLDLAMQNAWFRKSRFKGGKGKKLNIGGGGLGY
RERPGLGSENTDRGNNSNVMSNYEAYKPSTGAMGDRLTAMKAAFQSQYKSHFVAASLSNQ
KAGSSAAGASGWTSAGSLNSVPSNSAQQGHANSDSPIATAAKSIPGFASAGNLSSVPGGY
SPTGAQGLNNTASGSNSREGIGGGSGNGNRERYQENRGSSRHSHGDSGNRHGDGPRHGDG
RHGDGYRHPESSGRHGDGHRHGENRHGSGGRHGESRVGSDGRNGESRKEACGRESKTDGR
TDNRTDSRMDNRMDSKTDLKTDKTADGFAVPEPPKRKKSRWDS
NT seq
2832 nt
NT seq
+upstream
nt +downstream
nt
atgaattggaacaaaggtggccctggcaccaagaggggatttgggtttggtggttttgcc
attgctgctggaaaaaaagaagaaccgaagctccctcaacagtcccatagtgcttttggg
gcaactagctcttcagcagggtttgggaagtcagctccaccacagctcccttctttctat
aaaattggatctaagcgagcaaattttgatgaagaaaatgcttattttgaagatgaggaa
gaagactctagcaatgttgatttgccttacattcctgctgaaaattcacctacccgccag
caattccattccaagtcagcagactctgacagtgatgatgatcccctggaagcattcatg
gctgaagtagaggatcaagctgctcgagatatgaagagacttgaagaaaaggacaaggaa
agaaaaaatgtgaagggtattcgagatgacattgaagaggaagatgaccaagaagcttat
tttcgatacatggcagaaaaccctactgctggtatggttcaagaagaggaagaagataac
ctggaatatgacagtgatggaaatcccattgcaccttccaaaaaagtcattgatcccctt
cctcccattgatcattcggagattgattatccaccatttgaaaaaaatttctacaatgag
catgaagagataaccagcctcaccccacagcaagtgatagatcttcgacataagctcaat
cttcgggtctctggtgctgctccacccagaccaggaagcagttttgctcactttggattt
gatgagcaacttatgcatcagattcggaaatctgagtacacacagcctactcccatccag
tgtcagggtgttccagtggctcttagtgggagagacatgatcggcattgccaaaacaggc
agtgggaaaacagcagcctttatctggcccatgctgattcacatcatggatcaaaaggaa
ttggatccaggggatggacctattgcagtgattgtatgccctactagggagctgtgtcag
cagatccatgcagaatgcaagcggtttggaaaagcatacaatcttcgatctgtggccgtg
tatggaggaggaagtatgtgggaacaggctaaagcccttcaagaaggagctgagattgtt
gtctgtaccccaggtcggctgattgatcatgtgaagaagaaagctacaaatctccaaaga
gtctcttaccttgtatttgatgaagctgatcgaatgtttgacatgggttttgagtatcag
gtgcgatccatagccagtcatgtccgtcctgatagacagactcttttattcagtgcaact
ttccggaaaaagattgaaaaactagctcgagacatcctgattgaccctatccgagtggtt
caaggagacattggagaggcaaatgaagatgtgacccagattgtagaaattcttcactct
ggacccagtaaatggaactggctcactcggcgtctggtagaatttacctcttcaggaagt
gtcctcttgtttgtaactaaaaaagccaatgctgatgaactagctaacaacctcaggcag
gaaggacacaatctggggctgctccatggggacatggatcaaagtgaaaggaacaaggtc
atttcggattttaagaaaaaaggcatcccagttcttgtggctacagatgttgcagcccgt
ggtttggacattccttcaattaagactgtcatcaactatgatgtggctcgagatattgat
acccatacacacagaattggcaggacaggcagagcaggcgagaagggtgtggcttatact
ctcttgactcccaaggacagcaattttgctggcgaccttgtcaggaacatggaaggagct
aatcaacatgttaccaaggaacttctggacctcgcaatgcagaatgcctggtttcgtaaa
tctcgatttaaaggagggaaagggaaaaaactgaatattggtggtggaggccttggctac
agagaacgacctggtctaggttctgagaacacagaccgtggaaacaacagcaatgtgatg
agtaactatgaggcctacaaaccttccacaggggccatgggagaccgcctgactgcaatg
aaagcagctttccagtcgcagtacaagagccattttgttgctgccagtttaagcaaccag
aaggctgggagctctgctgctggggcaagtgggtggaccagtgcagggagcttgaattct
gtcccaagtaattcagcccagcagggccatgccaattctgacagccccattgccacagct
gccaagagcatcccaggctttgccagtgctgggaacctaagcagtgttccaggagggtat
tcacctactggagcccagggtctcaacaacacagcatctgggagcaacagccgggaagga
attggtggtggcagtggtaatgggaatagagagcgataccaagagaatcgaggtagtagt
cgccatagtcatggagatagtggtaatcgccatggtgatggtccacgtcatggagatggt
cgtcatggtgacggataccgccatccagaaagcagtggccggcatggagatggtcatcgg
catggagagaacagacatgggagtggtggtcgacatggggaaagccgggttgggagtgat
ggtcggaatggagaaagcaggaaagaggcttgtggtcgtgaaagcaagacagatggcagg
acagacaacaggacggatagcaggatggacaacaggatggacagcaagacagacttgaag
acagacaagacagcagatggctttgctgtgcctgagccacccaaacgcaagaagagtcga
tgggacagttaa
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integrated database retrieval system
