Sarcophilus harrisii (Tasmanian devil): 100922541
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Entry
100922541 CDS
T02286
Symbol
VPS41
Name
(RefSeq) vacuolar protein sorting-associated protein 41 homolog isoform X1
KO
K20184
vacuolar protein sorting-associated protein 41
Organism
shr
Sarcophilus harrisii (Tasmanian devil)
Pathway
shr04140
Autophagy - animal
shr04142
Lysosome biogenesis
shr04148
Efferocytosis
shr05132
Salmonella infection
Brite
KEGG Orthology (KO) [BR:
shr00001
]
09140 Cellular Processes
09141 Transport and catabolism
04142 Lysosome biogenesis
100922541 (VPS41)
04140 Autophagy - animal
100922541 (VPS41)
04148 Efferocytosis
100922541 (VPS41)
09160 Human Diseases
09171 Infectious disease: bacterial
05132 Salmonella infection
100922541 (VPS41)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
shr04131
]
100922541 (VPS41)
Membrane trafficking [BR:
shr04131
]
Endosome - Lysosome transport
Tethering complex
Hops complex
100922541 (VPS41)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TPR_Vps41
Beta-prop_Vps41
zf-RING_Vps41
Clathrin
VPS18_solenoid_2nd
zf_RING_Vps8_fungal
WD40_CDC20-Fz
ANAPC4_WD40
WD40_Prp19
Vps39_1
Beta-prop_THOC3
Beta-prop_HPS5
Beta-prop_EML_2
TPR_PEP5_VPS11
TPR_YpiA
WD40_WDHD1_1st
zf-RING_5
Beta-prop_RIG_2nd
Beta-prop_IFT122_1st
Beta-prop_WDR3_1st
zf_RING_Vps8
Beta-prop_ACSF4
RIG-I_C
CFAP251_N
Beta-prop_IFT140_2nd
Motif
Other DBs
NCBI-GeneID:
100922541
NCBI-ProteinID:
XP_031807758
Ensembl:
ENSSHAG00000003647
UniProt:
A0A7N4PRI6
LinkDB
All DBs
Position
1:7877758..8031196
Genome browser
AA seq
892 aa
AA seq
DB search
MIWSLWSLLSRGTAALCQLNPSERGTAKASGPSTALGVVTRDEGLPRMVGPCGRDVMEEE
ESEEEPKLRYERLSNGVTEILQKDAASCLTVHEKFLALGTHYGKVYLLDVQGNITQKFDI
SPVKINQISLDESGEHMGVCSEDGKVQVFGLYSGEEFHETFDCPIKIVAVHPQFLRSHNK
QFVTGGKKLVLFERSWMSRWKSSVLHEGEGNIRNVKWRGNLIAWANNMGVKILDVISKQR
ITNVPRDDISLRPDMYPCSLCWKDDVTLIIGWGSSIKVCSVKERHASEMRDLPNRYVEIV
SQFDMEFYISGLAPLCDQLVVLSYVKETSDKMEREYCARPRLDIIQPLPETCEEISSDAL
TVRGFQENECRDYHLEYSEGESLFYIVSPRDVVVAKERDQDDHIDWLLEKKKYEEALMAA
EISQRNIKRHKILDIGLAYISHLVEKGEHDMAARKCQKVLGKNAALWEYEVYKFKEIGQL
KAISPYLPRGDPILKPLIYEMILHEFLESDYEGFATLIREWPGDLYNNSVIVQAVRDHLK
KEPQNRTLLQTLAELYTYDKSYGQALQIYLTLRHKDVFQLIHKHNLFSSIQDKIVLLMDF
DAEKAVDMLLDNEDKISIKKVVEELENRPELQHVYLHKLFKRDHHKGQRFHEKQISLYAE
YDRPNLLPFLRDSTHCPLEKALEICQQRNFVEETVYLLSRMGNSRSALKMIMEELHDVDK
AIDFAKEHDDAELWEDLILYSIDKPPFITGLLNNIGTHVDPILLIHRIKEGMEIPNLRDS
LVKILQDYNLQILLREGCKKILVADSLSLLKKMHRSQMKGILVDEENICESCLSPVLPGD
AAKPFSAVVFHCRHMFHKECLPVPSMNSAGQFCNICSAKNRGPGSTILEMKK
NT seq
2679 nt
NT seq
+upstream
nt +downstream
nt
atgatctggagcctctggagtctgctgagtagggggacggcagccctttgccagctgaac
ccatcggagagagggacagccaaggcaagtggcccatcaacggctcttggagtggtcacc
agggatgagggcctgcccagaatggtggggccgtgtgggagagatgtaatggaggaggaa
gaaagcgaagaggagcccaagctcaggtacgagcggctctccaatggggtgacggagatt
ctgcagaaggacgccgccagctgcctgacagtgcacgagaagtttttggcactgggcaca
cactatggcaaggtttatttgcttgacgtccaaggaaatatcactcaaaagtttgacatt
agtcctgtgaagataaatcagattagcctggatgaaagtggagaacacatgggtgtgtgc
tcggaggatggcaaggtgcaagtgtttggactgtattccggggaagaatttcatgagact
tttgactgtcctattaaaattgttgccgttcacccccagtttttgaggtcccataacaag
cagtttgtgactggagggaagaagctggtgttgtttgagcgatcctggatgagcagatgg
aagtcttcggttctgcatgaaggagaaggaaacataagaaacgtgaagtggcggggaaac
ctgatcgcttgggccaataacatgggtgtgaagatcctggacgtgatttcgaagcagaga
atcactaacgtacctcgagacgacatcagccttcgccccgacatgtacccttgcagcctc
tgctggaaggacgatgtcacgctcatcatcggctggggctcctccatcaaggtctgttcg
gtgaaggaacggcacgccagtgaaatgcgtgacttaccaaaccgttacgtcgaaatagtg
tctcagtttgacatggagttctacatcagcgggcttgctcctctctgtgaccagcttgtg
gtgctttcgtatgtcaaggagacctcagacaaaatggagagggaatactgtgcccggcca
agactggacattatccagccgcttccggagacctgcgaagagatctcctccgatgccctc
acagtgagaggctttcaggagaatgaatgcagagactaccacctggagtactccgaaggt
gaatcgctcttctatattgtcagtcccagagatgtcgtcgtggctaaggagcgggaccaa
gacgatcacatcgactggctccttgaaaagaaaaaatacgaagaagctttgatggctgct
gaaattagccaaaggaatattaaaaggcacaagattctggatatcggtctggcctacata
agtcacctggtggagaagggagagcatgacatggcagcccgcaaatgtcagaaagttctt
gggaaaaatgcagctctctgggaatatgaagtttacaaatttaaagaaatcggacagctt
aaggcgatcagcccgtatttgccaaggggggatcccattctgaagcctctcatctacgaa
atgatcctgcacgagtttttggagagtgattatgagggctttgccacgctgatccgggag
tggcccggggacctctacaacaactcggtcatcgtgcaggccgttcgggaccacctcaag
aaggagcctcagaaccggaccctgctgcagacgctggctgagctgtacacgtacgacaag
agctacggccaggccctgcagatctacctgacgctgcgccacaaggacgtcttccagctg
atccacaagcacaacctcttcagctccatccaggacaagatcgtgctgctcatggacttt
gatgctgagaaagccgtggacatgcttctcgacaacgaagacaagatttcgataaaaaag
gttgtggaggagctggaaaacaggccggagctgcagcacgtgtatctgcacaagcttttc
aagagggaccatcacaagggccagcgcttccacgagaagcagatcagcctttatgccgaa
tacgatcgccccaacctgctgccctttctgcgagacagcacccactgccctctggaaaag
gctcttgagatctgccagcagagaaactttgtggaagagaccgtctacctgctgagccgc
atgggcaacagtcggagcgccctgaagatgatcatggaggagctgcacgacgtggacaag
gccatcgactttgccaaggagcacgacgacgccgagctgtgggaggacctgattctgtac
tccatcgacaagccgccgttcattaccggcctcttaaacaacatcggcacccacgtggac
ccaattctcctcattcaccgaattaaggaaggaatggagattcccaacctgagagactcg
ctggtaaaaatcctgcaggactacaacctccagattctccttcgtgaaggctgcaagaag
atcctggtggcagactctttgtccctcctaaagaaaatgcaccgctcccagatgaaaggc
atcctggttgatgaagaaaacatctgtgagtcgtgtctctcccctgtgcttcctggagat
gcagcaaagcccttcagtgctgtcgtcttccactgtcggcacatgttccacaaagagtgt
ctgcccgtccccagcatgaattctgctggacaattctgtaacatctgcagtgctaagaac
cggggcccaggaagcacaatcttggagatgaaaaagtag
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