Sarcophilus harrisii (Tasmanian devil): 100923248
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Entry
100923248 CDS
T02286
Symbol
CLSTN1
Name
(RefSeq) calsyntenin-1 isoform X1
KO
K22659
calsyntenin 1
Organism
shr
Sarcophilus harrisii (Tasmanian devil)
Brite
KEGG Orthology (KO) [BR:
shr00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
shr04515
]
100923248 (CLSTN1)
Cell adhesion molecules [BR:
shr04515
]
Cadherins
Cadherin related
100923248 (CLSTN1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CLSTN_C
Cadherin
CDC45
Laminin_G_3
Laminin_G_2
Glyco_hydro_16
Toxin_R_bind_N
EphA2_TM
V_ATPase_I
Cadherin_C_2
SID-1_RNA_chan
PFF1_TM
Zip
Motif
Other DBs
NCBI-GeneID:
100923248
NCBI-ProteinID:
XP_031818763
Ensembl:
ENSSHAG00000001409
UniProt:
G3VEH9
LinkDB
All DBs
Position
3:574053576..574139971
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AA seq
994 aa
AA seq
DB search
MLREPPQPQPRRRRCSPPAASAWLVTAAALLGLCGGGWAARVNKHKPWIETTYHGIVTEN
DNTVLLDPPLIALDKDAPLRFAESFEVTVTKEGEICGFKIHGQNVPFDAVVVDKSTGEGI
IRSKEKLDCELQKDYTFTIQAYDCGKGPDGANTKKSHKATVHIQVNDVNEYAPIFKEKSY
KATVIEGKKYDNILKVEAVDADCSPQFSQICSYEIVTPDVPFVVDKDGYIKNTEKLSYGK
EPQYKLTVTAYDCGKKRATEDVLVKISVKPTCKPGWQGWNKRIEYEPGTGSLALFPNIHL
ETCDEAVTSIQATVELETSHIGKGCDRDTYSEKSLHRLCGAASGTAELLPPPSSALNWTV
GLPTDNGHDSDQVFEFNGTQAVKIPEGVVTVNLKEPFMISVWMRHGPGGREKETILCNSD
KTDMNRHHYSLYVHNCRLVFLFRQDPSEEKNYKPAEFHWKLNQVCDKEWHHYVLNVEFPS
VTLYVDGVSYDPFPVTEDYPLHPSKIETQLVVGACWQEYSGNENDNETETEAVTVSSAGG
ELHMAQFFRGNLAGLMIRSGKLENKKVIDCLYTCKEGLDLQVTESKGMKIQANPSQSVLT
LEGDDVEQFDKAMQHISYLNSRQFPTPGIRRLQITSTVKCFNEEACMSIPLVDGYVMVLQ
PEEPKISLSGINHFARAASEFESAEGVSLFPELRIISTITREVEQDTDGDEDPTVQESLV
SEEIMHNLDTCEITVLGEELSADQESLEVDMARLQQKGIETSSSNLGIIITGVDTMASYE
EVLHLVRYRNWHASTAVLDRKFKLVCSELNGRYVSNEFKVEVSVIHTANPVEHANHIAAQ
PQFVHPVHHSFVDLSGHNLANPHPFSVVPSTATVVIVVCVSFLVFMIILGVFRIRAAHQR
TMRDQDTGKENEMDWDDSALTITVNPMETYEDQHSSEEEEEEEEEEESEDGEEEDDITSA
ESESSEEEEGEPEEDQQNVNRQQQLEWDDSTLSY
NT seq
2985 nt
NT seq
+upstream
nt +downstream
nt
atgctgcgggagccgccacagccgcagccgcgccgccgccgctgctccccgcccgccgcc
tccgcctggctcgtgacggccgccgcgctgctcgggctctgcggcgggggctgggcggcg
cgagttaacaagcacaaaccctggattgaaacgacatatcatggtatagtcacagaaaat
gacaacacagtcctcttggatcctcctttgattgccttggataaagatgcacctctgcgc
tttgcagagagttttgaggtgacagtcaccaaagaaggtgagatatgtggatttaaaatt
cacgggcaaaatgtcccctttgatgctgtggtagttgataaatccactggtgagggaata
attcgctccaaagagaaactggactgtgaacttcagaaagactacaccttcaccatccag
gcctatgattgtgggaagggaccagatggagccaatacgaaaaaatctcacaaagcaaca
gtccatattcaggtgaatgatgtgaatgaatatgcccctatatttaaagaaaaatcctac
aaagctacagttattgaggggaagaaatatgacaacattttaaaagtggaagcagtggac
gcagactgttcccctcagttcagtcagatctgcagctatgaaattgtgactccagatgtg
cccttcgttgttgacaaggatggttatataaaaaacactgagaaactaagctatgggaaa
gagcctcagtataagctgacagttactgcgtatgactgtgggaagaaaagagctacagaa
gatgtgttggtcaagattagtgtgaaacccacgtgcaagcctggctggcaaggatggaac
aagaggattgagtatgagccgggtaccgggtctttggctctcttccccaacatccatttg
gagacttgtgatgaagctgtcacctccatccaggcaacagtggagctagagacgagccac
attggcaagggctgtgatcgggacacatactcagagaagtccctgcaccggctctgcggt
gcagcctccggtactgctgaacttcttcctcctccaagcagcgccttgaactggactgtg
ggcctccccaccgataacggccatgacagcgatcaggtctttgaatttaatggcactcaa
gctgtgaagattccagagggggttgtgacagtaaatctgaaagagccttttatgatttct
gtgtggatgaggcatggcccagggggcagggagaaggaaaccattctttgcaattcagat
aagacagatatgaaccggcatcattattccctctatgtacataattgccgactggttttt
ctcttccgtcaagacccttcagaggagaagaattataaacctgctgaattccactggaaa
ttaaaccaggtgtgcgacaaggaatggcatcattacgttctcaatgtggaattccccagt
gtgactctgtatgtcgatggtgtttcctatgatccctttccagtgactgaagattaccct
cttcacccttccaagatagaaactcagctggtggtcggagcatgttggcaagagtattca
ggaaatgaaaatgacaatgagactgagactgaggcagtgactgtgagctctgcaggtggc
gagctacacatggctcaattttttcgaggtaatctggctggcttaatgattcgttctggg
aaactggaaaacaagaaggtgatagattgtctgtatacctgcaaggaagggctcgatttg
caagtgactgagagcaaaggcatgaagattcaagcaaaccccagccagtcggtgctgact
ttggaaggagatgacgtagaacagtttgataaggccatgcagcacatttcctacctgaat
tctcgacagttccccacaccgggaatccgcaggctccagatcaccagcaccgtcaagtgc
ttcaacgaagaggcttgtatgtcaatccctctggtggatggctacgtgatggtcttacag
ccagaggagcccaaaatcagcttgagtggtattaaccattttgctcgggcagcttcagaa
tttgaaagtgctgagggagtctccctgttcccggagcttcgaatcatcagcaccatcacc
cgggaagtagagcaggacaccgatggtgatgaggatcccacagtccaagagtccttggtg
tctgaggaaatcatgcacaatctagacacgtgtgagatcacggtgctgggagaggagctc
agtgcagaccaggaaagtctggaggtggacatggctcgtctgcagcagaagggcatcgag
acaagcagctccaacctgggcatcatcatcacaggtgtggacaccatggccagctatgag
gaggtgctgcaccttgtgcgctaccgcaactggcacgcctccaccgcagtgctggacagg
aagttcaagctggtgtgctcggagctgaacggacgctatgtcagcaacgaatttaaggtg
gaggtgagcgtcatccacacggccaacccagtggagcatgcgaaccacattgcggcccag
cctcagtttgtccatcccgtgcatcattccttcgtcgatctgtctggccacaatctggct
aatccccaccccttttcagttgtccccagtacggcaactgtggtgattgtggtgtgcgtc
agcttcctagttttcatgatcatcctgggagtgttccggatccgggctgcgcaccagcga
accatgcgggaccaggacacgggcaaggagaacgagatggattgggatgactctgccttg
accattacagtgaacccgatggagacctacgaggaccagcacagcagcgaagaggaggag
gaggaggaggaagaggaggagagtgaggatggtgaggaagaagacgacataactagcgca
gagtcggaaagcagcgaggaagaggaaggggagcccgaggaagaccagcagaatgtgaat
agacagcagcagctcgagtgggacgactctaccctcagctattga
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