Sarcophilus harrisii (Tasmanian devil): 100923250
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Entry
100923250 CDS
T02286
Symbol
PCDH9
Name
(RefSeq) protocadherin-9 isoform X1
KO
K16498
protocadherin delta 1
Organism
shr
Sarcophilus harrisii (Tasmanian devil)
Pathway
shr03273
Virion - Lassa virus and SFTS virus
Brite
KEGG Orthology (KO) [BR:
shr00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03273 Virion - Lassa virus and SFTS virus
100923250 (PCDH9)
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
shr01009
]
100923250 (PCDH9)
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
shr04515
]
100923250 (PCDH9)
Protein phosphatases and associated proteins [BR:
shr01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
100923250 (PCDH9)
Cell adhesion molecules [BR:
shr04515
]
Cadherins
Protocadherins
100923250 (PCDH9)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Protocadherin
Cadherin_CELSR2_9th
Cadherin_2
MAP17
V_ATPase_I
Big_9
RCR
EphA2_TM
DUF6249
7tm_3
DUF6377
Motif
Other DBs
NCBI-GeneID:
100923250
NCBI-ProteinID:
XP_031819472
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All DBs
Position
3:complement(105826016..106846124)
Genome browser
AA seq
1259 aa
AA seq
DB search
MDLRDFYLLAALIACLRLDSAIAQELIYTIREELPENVPIGNIPKDLNISHINAATGTSA
SLVYRLVSKAGDAPLVKVSSSTGEIFTTSNRIDREKLCAGASYSEENECFFELEVVILPN
DFFRLIKIKIIVKDTNDNAPMFPSPVINISIPENTLINSRFPIPSATDPDTGVNGVQHYE
LLNGQSVFGLDIVETPEGEKWPQLIVQQNLDREQKDTYVMKIKVEDGGTPQKSSTAILQV
TVSDVNDNRPVFKEGQVEVHIPENAPVGTSVIQLHATDADIGSNAEIRYIFGAQVAPATK
RLFALNNTTGLITVQRSLDREETAIHKVTVLASDGSSTPARATVTINVTDVNDNPPNIDL
RYIISPINGTVYLSEKDPVNTKIALITVSDKDTDVNGKVICFIEREVPFHLKAVYDNQYL
LETSSLLDYEGTKEFSFKIVASDSGKPSLNQTALVRVKLEDENDNPPIFSQPVIELSVSE
NNRRGLYLTTISATDEDSGKNADIVYQLGPNASFFDLDRKTGVLTASRVFDREEQERFIF
TVTARDNGTPPLQSQAAVIVTVLDENDNSPKFTHNHFQFFVSENLPKYSTVGVITVTDAD
AGENKAVTLSILNDNENFVLDPYSGVIKSNVSFDREQQSSYTFDVKAIDGGQPPRSSTAK
VTINVMDVNDNSPVVIYPPSNTSFKLVPLSAIPGSVVAEVFAVDIDTGMNAELKYTIVSG
NNKGLFRIDPVTGNITLEEKPAPTDVGLHRLVVNISDLGYPKSLHTLVLVFLYVNDTAGN
ASYIYDLIRRTMETPLDRNIGDSSQPYQNEDYLTIMIAIVAGAMVVIVVIFVTVLVRCRH
ASRFKAAQRSKQGAEWMSPNQENKQNKKKKRKKRKSPKSSLLNFVTIEESKPDDAVHEPI
NGTISLPAELEEQSIGRFDWGPAPPTTFKPNSPDLAKHYKSASPQSAFHLKPDTPISVKK
HHVIQELPLDNTFVGGCDTLSKRSSTSSDHFSASECSSQGGFKTKGPLHTRQCNTHSKGD
SIPVTPQKCPSSAGFHIQENEESHYEELNFGDMPKYLWEIWVPEKPWVSQRRVTFHLPDG
SQESCSDSGLGDHEPVGSGTLISHPLPLVQPQDEFYDQASPDKRTEADGNSDPNSDGPLG
PRGLAEATEMCTQECLVLGHSDNCWMPPGLGPYQQPKSPLSTFAPQKEWVKKDKLVNGHT
LTRTWKEDSNRNQFNDRKQYGTNEGHFNSGSHMSDIPLANLKSYKQVSGAVESPKEHQL
NT seq
3780 nt
NT seq
+upstream
nt +downstream
nt
atggacctgagggatttttacctgttggctgctctgattgcctgtttaaggctggattct
gctatagctcaagaacttatttacactataagagaagagctgcctgaaaatgtacccata
ggaaacataccaaaggacctgaacatttctcacatcaatgctgccacagggaccagtgcc
agcctcgtctacagactggtttctaaagctggggatgcccctttggtcaaagtgtccagt
agcactggggaaatctttaccacctctaatagaatagacagagaaaaactctgtgctgga
gcttcatattctgaagagaatgaatgtttctttgaacttgaagtggtgattctccctaat
gatttctttagactgatcaaaataaaaataattgtaaaggataccaatgacaatgcaccg
atgttcccctctcctgtcatcaatatctccattccggaaaatactttgatcaacagccgg
tttccaatcccatcagccacagatcctgacacaggtgtcaatggtgtgcagcactatgaa
ttgttaaatgggcagagtgtatttgggttggatatcgtggaaacgccggaaggagagaag
tggccccaattaattgttcagcaaaacttggatagagagcagaaagatacttatgtgatg
aaaatcaaagtggaagatggaggtacccctcaaaaatccagcacagccattctgcaagtc
acagtaagtgatgttaatgacaacaggccagtgtttaaagagggtcaggtggaggttcat
attccagaaaatgcccctgtaggtacttctgtcattcagcttcatgccactgatgcagat
ataggaagcaatgcagaaatccgatatatttttggtgcccaagttgcccctgcaaccaaa
agactctttgctttaaataatactacagggctgataacagttcagaggtccttagaccga
gaagaaacagccattcacaaagtgaccgtgctggctagtgatggtagctccactcctgcc
cgggccacagttactattaatgtcactgatgtaaatgataatcctccgaatatagacctc
aggtacattataagtcccatcaatggcacggtgtacttatctgagaaagatcctgtcaat
acaaagattgccctaattacagtttcagataaggacactgatgtgaatggcaaagtgatc
tgtttcattgagagagaggtcccatttcacttgaaggcagtttacgacaaccagtatttg
ctagagacctcttccttgttggactatgagggcaccaaagaattcagctttaaaattgtt
gcctccgattctgggaagcccagtttgaaccagactgccctggtaagagttaagctggag
gatgaaaatgacaaccctccaatttttagccagcctgtaattgagctgtcagtttctgaa
aacaaccgacgggggctatacttaacaactattagtgccacggacgaagacagtgggaaa
aatgcagacattgtgtatcagcttggaccgaatgcctccttctttgatctggacagaaag
acaggggtcttgacggcctccagagtttttgaccgggaagagcaagaaaggttcattttt
actgtaactgctagggacaatgggacccctcccctgcagagtcaagctgctgtgatagtt
actgtgctggatgagaatgataatagtcctaagtttactcataatcactttcagttcttt
gtatctgagaacttaccaaagtatagtacggttggggtgatcactgttacagatgcagat
gctggggagaataaagctgtgaccctttctatcctgaacgacaatgagaattttgtgttg
gatccttactccggggttataaagtcaaatgtctcctttgaccgggaacagcagagctcc
tatacctttgatgtcaaggccattgatggagggcaaccaccccgttcctctactgccaag
gttaccatcaatgtcatggatgtcaatgacaatagtcctgttgtcatctacccaccttct
aatacttctttcaagttggtaccactttcagccatccctggctcagtggtagcagaagta
tttgctgtggatattgacactggaatgaatgctgaacttaaatatacaatagtcagtggg
aacaacaaaggcttattccgtattgatccagtgacaggcaacattactttggaagaaaaa
ccagctcctacagatgtggggctacatcgtttagtagtcaacataagtgatctggggtat
cctaagtctttgcatacccttgtgctagtctttctgtatgtcaatgacactgcaggaaat
gcatcctatatttatgacttgattcggaggactatggagacccccttggacaggaacata
ggggatagtagtcaaccctatcaaaacgaagactatcttacaatcatgattgccatcgtg
gcaggggccatggtggtcatagtggtgatctttgtcaccgtcttggttcgctgtcgccat
gcatccaggttcaaagcagctcagaggagcaagcaaggtgccgagtggatgtctcctaac
caggagaacaaacagaacaagaaaaagaaaaggaagaaaaggaagtcacctaagagttca
cttttgaactttgttactattgaggagtccaaacctgacgatgcggtccatgaacctatc
aacgggaccattagcctgccagcagagctggaggagcaaagtataggaagatttgattgg
ggcccagcaccacctacaaccttcaagcccaacagccctgacctagctaagcattataaa
tctgcctctccacaatctgcttttcatctcaaaccagacactccaatctcagtgaaaaag
caccatgtgattcaggaacttcccctggacaacacctttgttgggggttgtgacaccctt
tcgaaacgatcttccactagttcagaccacttcagtgcctcagagtgcagttcccaagga
ggcttcaagacaaagggccccttacacaccagacagtgtaatacacacagcaaaggtgac
agtattcctgtcactccccagaaatgtcccagctctgcgggtttccacattcaggagaat
gaagaaagccattatgaggaactgaattttggagatatgccgaagtacttgtgggagatt
tgggtacctgaaaaaccatgggtgtctcagcgccgtgttacgtttcacctccctgatggt
tcccaagaaagctgcagtgacagtggtctaggagaccatgagcctgtgggtagtggaacc
ctgatctcacatcctcttcctctggttcagccacaggacgaattctacgaccaagcctcc
ccggacaagaggactgaagctgatggcaattctgaccccaattctgatgggcctctgggt
ccccgaggattagctgaagctacggagatgtgcacccaagaatgtttggtgttgggtcac
tctgataactgctggatgcctcctggcctaggtccctaccaacagcccaaatctcctctc
tccacctttgcccctcaaaaggaatgggtgaagaaggacaaactggtgaatgggcacact
ttgaccaggacctggaaagaagatagcaacaggaaccagttcaatgaccggaagcagtat
ggtaccaacgaagggcacttcaacagtggcagccacatgagtgacataccattggctaat
ttgaagtcttataaacaggtgtcaggagctgtggagagtcccaaggaacaccagctataa
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integrated database retrieval system
