Sarcophilus harrisii (Tasmanian devil): 100923506 Help Entry 100923506         CDS       T02286                                  Symbol COL4A1 Name (RefSeq) collagen alpha-1(IV) chain   KO K06237   collagen type IV alpha Organism shr  Sarcophilus harrisii (Tasmanian devil) Pathway shr04151   PI3K-Akt signaling pathway shr04382   Cornified envelope formation shr04510   Focal adhesion shr04512   ECM-receptor interaction shr04820   Cytoskeleton in muscle cells shr04926   Relaxin signaling pathway shr04933   AGE-RAGE signaling pathway in diabetic complications shr04974   Protein digestion and absorption shr05146   Amoebiasis shr05165   Human papillomavirus infection shr05200   Pathways in cancer shr05222   Small cell lung cancer Brite KEGG Orthology (KO) [BR:shr00001]  09130 Environmental Information Processing   09132 Signal transduction    04151 PI3K-Akt signaling pathway     100923506 (COL4A1)   09133 Signaling molecules and interaction    04512 ECM-receptor interaction     100923506 (COL4A1)  09140 Cellular Processes   09144 Cellular community - eukaryotes    04510 Focal adhesion     100923506 (COL4A1)   09142 Cell motility    04820 Cytoskeleton in muscle cells     100923506 (COL4A1)  09150 Organismal Systems   09152 Endocrine system    04926 Relaxin signaling pathway     100923506 (COL4A1)   09154 Digestive system    04974 Protein digestion and absorption     100923506 (COL4A1)   09158 Development and regeneration    04382 Cornified envelope formation     100923506 (COL4A1)  09160 Human Diseases   09161 Cancer: overview    05200 Pathways in cancer     100923506 (COL4A1)   09162 Cancer: specific types    05222 Small cell lung cancer     100923506 (COL4A1)   09172 Infectious disease: viral    05165 Human papillomavirus infection     100923506 (COL4A1)   09174 Infectious disease: parasitic    05146 Amoebiasis     100923506 (COL4A1)   09167 Endocrine and metabolic disease    04933 AGE-RAGE signaling pathway in diabetic complications     100923506 (COL4A1)  09180 Brite Hierarchies   09183 Protein families: signaling and cellular processes    04147 Exosome [BR:shr04147]     100923506 (COL4A1)    00536 Glycosaminoglycan binding proteins [BR:shr00536]     100923506 (COL4A1) Exosome [BR:shr04147]  Exosomal proteins   Exosomal proteins of other cancer cells    100923506 (COL4A1) Glycosaminoglycan binding proteins [BR:shr00536]  Heparan sulfate / Heparin   Extracellular matrix molecules    100923506 (COL4A1) BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  Collagen C4 Motif Other DBs NCBI-GeneID:  100923506 NCBI-ProteinID:  XP_003765783 Ensembl:  ENSSHAG00000011617 LinkDB All DBs Position 3:complement(161755929..161948666) Genome browser AA seq 1668 aa AA seqDB search MSPRPVVWLLLLLAALLLNEEQSKAAAKGCSGSGCGKCDCNGVKGQKGERGLPGLQGVIG FPGMQGPEGPHGPPGNKGDAGEPGLPGTKGTRGPPGSSGYPGNPGLPGIPGQDGPPGPPG IPGCNGTKGDRGPVGPPGLPGFSGIAGPPGLPGMKGDPGEILSLIPGMPLKGERGFPGAP GPMGPRGNPGLPGMDGPPGYSGPPGPPGPPGLPGEKGQMGLSFQGPKGDKGEQGVSGPPG EPGQAQVGKKGDLITQGPKGQKGEPGAPGMPGEREKGEPGKPGPRGKPGKDGEKGEKGSP GLKGDAGFPGIPGQTGAKGERGFPGPQGLPGTVISTQPGGEKGEKGYPGAPGLKGEPGQK GYPGIPGQPGPPGFPVPGQIGAPGFPGERGEKGDPGPPGQSLPGTSGRDGFPGLPGPPGP PGLPGHTNGIVECQPGPPGDQGPPGSAGLPGLTGEMGQKGEKGQGCLTCDLDGVPGLPGP QGPPGEIGFPGQPGAKGDRGLPGHNGLEGMPGPPGLPGLRGEPGAKGEPGEIYLDAKLKG DKGEPGFPGQPGAPGRAGTPGRDGHPGLQGPKGSPGSIGLKGDRGPPGGVGFPGSRGDIG PPGPPGFGLPGPVGDKGQAGFPGSPGSPGLPGPKGEAGKVVPLPGPPGAEGVPGPPGFPG PQGDRGFPGSPGRQGPPGEKGSVGQPGIGFPGPPGPKGVDGLPGAIGQPGNPGRPGFDGL PGNPGVPGQKGEPGVGLPGPKGSAGLPGIPGRPGEKGNVGGPGIPGEHGLIGPPGLQGLR GDPGLQGIQGPKGAPGAPGIGPPGVMGPPGGQGPPGSAGPPGIKGEKGYPGFPGSDMPGP KGDKGSPGLPGLTGQIGLPGPPGTQGTPGLPGFPGPKGEMGVMGTPGQPGPPGPVGSPGF QGLKGDQGFPGTTGPRGDPGFKGDKGDAGLPGQPGSMDKVDMDSMKGQKGDQGEKGQTGP IGDKGARGDPGTPGVPGKDGQAGTPGQPGPKGDQGLGGSPGAPGLPGPKGSVGGMGLPGS PGEKGAQGIPGSQGIPGFPGLKGEKGVKGEAGRPGIGTPGLPGEKGDTGPSGFPGRPGEK GEKGSPGMPGMPGPPGPGGLPGNVGYPGSPGMPGEKGDKGLPGLDGVPGVKGDAGQPGLP GPAGPGGQKGEPGGDGIPGSAGEKGEPGLPGRGLPGFPGSKGEKGSKGELGFPGSAGSPG IPGLKGEPGFMGPPGPPGQQGLPGVPGRAVEGPKGDRGPQGQPGIPGVPGPMGPPGLPGL DGAKGEKGNPGWPGSPGAPGAKGDPGFQGMPGIGGTPGITGSKGDMGPPGVPGFQGAKGS PGLQGLKGDQGDQGLPGSKGLPGPPGSPGPYSLIKGEPGIPGPEGPVGLKGIPGPPGPKG QQGVTGSVGIPGPPGNPGFDGAPGQKGEPGPFGPPGPKGHPGPPGPDGLPGSMGPPGTPS VDHGFLVTRHSQTIDDPQCPPGTKIIYHGYSLLYVQGNERAHGQDLGTAGSCLRKFSTMP FLFCNINNVCNFASRNDYSYWLSTPEPMPMSMAPISGENIRPFISRCAVCEAPAMVMAVH SQTIQIPQCPSGWSSLWIGYSFVMHTSAGAEGSGQALASPGSCLEEFRSAPFIECHGRGT CNYYANAYSFWLATIERNEMFKKPTPSTLKAGELRTHVSRCQVCMRRT NT seq 5007 nt NT seq  +upstreamnt  +downstreamnt atgagtccacggccggttgtttggctgctgctgttgctggctgccctcctgctcaacgag gagcagagcaaagcagctgcaaagggttgttctggttctggctgtggaaaatgtgactgc aatggagtaaaaggacaaaaaggtgaacgaggtcttccaggattacaaggtgttatcggg tttcctggaatgcaagggcctgaaggtccacatgggcctccgggtaataagggggatgct ggagaaccaggactaccaggaacaaaaggaacgagagggccaccaggctcatctggttat cctggaaaccctggacttcctggtattccaggccaagatggtccaccaggtcctcctgga atcccaggatgcaatggtacaaagggtgatagaggtccagtgggtcctcctggtttgcct ggattttctgggatagcaggcccccctggattgccaggaatgaagggagacccaggtgaa atccttagtctaatcccaggcatgccattgaaaggtgaaaggggatttcctggagcccct ggaccaatgggtccaagaggaaacccagggttaccaggcatggatggtccaccaggatat tcgggaccacctggtccaccaggtcctccaggacttccaggtgaaaagggtcaaatgggt ttgagttttcaaggacccaaaggtgacaagggtgaacaaggtgttagtggacctccaggt gaaccaggacaagctcaagtaggaaaaaagggagatcttattactcagggaccaaaaggt caaaaaggagaacctggagctcctggaatgccaggtgaaagagagaaaggtgaacctggt aaaccagggcctcgagggaaacctggaaaggatggtgaaaaaggagaaaagggaagtcca ggtctaaaaggtgatgcaggattcccaggaatcccaggccaaacgggtgctaagggagag agaggattcccaggccctcaaggattaccaggcactgtgataagcacacaaccagggggt gaaaaaggagagaagggatatccaggtgctccaggattaaaaggcgaaccaggtcaaaaa ggttatccaggtattccaggccaaccaggtcctccaggcttcccagtccccggacaaatt ggtgctcctggctttcctggtgaaaggggagaaaagggtgatccaggtcctccaggacaa tcattgcccggaacaagtggaagagatgggttcccaggacttcccgggcctcctggacct cctggcttaccaggccatacaaatggaatagtggaatgccagcctggaccacctggagat caaggaccaccgggaagtgctgggctaccaggattgacaggggagatgggacagaaaggt gagaaaggtcaaggctgcctaacctgtgatctggatggagttcctggacttccaggtcca caaggaccaccaggggaaataggttttccaggacagccaggtgctaagggagacagaggt ttacctggacataatggtcttgaagggatgcctgggcctccaggtttgccaggactgagg ggtgagccaggagcaaagggagagcctggagagatttatttggatgcaaagctgaagggt gacaaaggagagccaggttttccaggacaacctggtgcccctggaagagcaggaacacct ggaagagatggccatcctggtcttcagggccccaaaggatcaccgggttcaataggacta aaaggagaccgtggtccccctggaggagttggttttcctggaagtcgtggtgacataggc cctcctggcccaccaggatttggcctacctggtccagttggtgacaaagggcaagcaggt tttccaggaagccctgggtccccaggtctcccaggtcctaagggtgaagcaggaaaagtg gttcctctacctggtcccccgggagcagaaggagttccaggacccccaggtttcccagga ccccaaggtgacagaggttttcctggcagcccaggaagacaaggacctccaggagaaaaa gggtctgttggccaaccaggaatagggtttccaggacccccaggaccaaaaggtgttgat ggcttgcctggagctataggtcagcctggaaatccaggtcgtccaggatttgatggttta ccaggaaatccaggtgttccaggccaaaaaggtgagcctggagttggtctcccaggtccc aaaggatcagcaggtcttcctggcattcctggacgccctggtgaaaaggggaatgttggt ggaccagggatcccaggagaacatggacttatagggccacctgggctacaaggactcaga ggtgacccagggctgcaaggaatccaaggcccaaaaggtgcccctggtgctccaggaata ggccctcccggagttatgggcccccctggaggacaggggccaccaggatcagcaggtcct cctggaatcaaaggagaaaagggttaccctggattcccaggatcagatatgccaggaccc aaaggagataagggaagtccaggtcttcctggcttaacaggtcaaataggattacctggg cctcctggcacacaagggactcctggacttccaggttttccaggtcccaagggagagatg ggagtaatgggaacccctggtcagccaggtcctcctggaccagtaggttctccaggtttc caaggactaaaaggtgaccaaggtttcccaggtacaacaggacccaggggtgatccaggt ttcaaaggtgataagggtgatgctggtctccctggacagccaggatcaatggataaagtg gacatggacagtatgaagggccagaaaggagatcaaggagaaaagggacaaactgggcca attggagataaaggagccagaggagatcctggcactccaggagtacctgggaaggacgga caagcaggaactcccggccagccaggtcctaaaggtgatcaaggtcttgggggatctcca ggtgctccaggactaccaggaccaaagggttctgttggtggaatgggtttgccagggtca cctggagaaaaaggagcacaaggaatcccaggttctcaaggtatcccaggcttcccagga ttaaaaggagaaaagggagtgaaaggagaagcaggtcgcccaggcattgggactcctgga cttcctggtgaaaagggagacactggaccttcaggtttcccaggaaggcctggagaaaag ggagaaaaaggaagcccagggatgccaggaatgcctggtcctccaggtcctggaggatta cctgggaatgtaggctatccagggagccctggaatgcctggagagaagggtgacaaagga cttcctggtttggatggtgttcctggagttaaaggagatgcaggtcagcctggtcttcca ggtccagcaggtccaggtggtcaaaaaggtgaaccaggtggtgatggaattccaggatca gctggtgagaagggtgaaccaggtcttccaggaagaggacttccaggatttccaggttcc aaaggagaaaaaggttccaagggagagttgggtttcccaggatcagcaggaagtccagga attcctggactcaaaggagaaccaggatttatgggtcctccgggtcccccaggacaacaa ggattacctggagttcctggtcgagcggtagaaggtcctaaaggagacaggggtccacaa ggtcaacctggcatacctggtgttcctggacccatgggccctcctggccttccaggactt gatggagcaaaaggagaaaaaggaaatccaggttggccaggatccccaggtgctccagga gctaagggagatccaggatttcagggaatgcctggtattggtggtacaccaggaatcact ggttctaagggtgatatgggacctccaggtgttccaggatttcaaggtgccaaaggttct cctggcctccaggggctcaaaggagatcaaggggatcagggactaccaggttcaaaaggt cttccaggaccacctggttccccaggtccttatagcctaatcaaaggagagccaggtatc cctggacctgaagggccagtcgggcttaaaggtattccaggccctccaggccctaaagga caacaaggtgtaacgggctctgtgggtattcctggaccacctggtaacccaggatttgat ggtgcacctggacaaaaaggagaaccaggcccttttggtcctcctggtccaaaaggacat cctggtccacccggtccagatgggcttccagggtcaatgggtccaccaggtaccccctct gtagatcatggcttccttgttactaggcacagtcaaaccatagatgatccacaatgccct cctgggaccaaaataatttaccatggctattccttgctctacgtacaggggaatgaacgt gcacatggtcaggacttgggtacggctggaagctgtttgcgaaaattcagtactatgcca tttctcttctgcaatattaacaatgtttgcaactttgcatcaagaaatgactactcttat tggttgtctactcctgagcccatgccaatgtcaatggcacctatctctggtgaaaacatt aggccttttattagtaggtgtgctgtatgtgaggctcctgccatggtgatggcagtccat agtcagacaatccaaataccacagtgtcccagtggatggtcatcactttggattggctat tcttttgttatgcacaccagcgctggtgccgaaggttctggccaggcactagcatcccct ggttcctgtctggaagaatttagaagtgcacccttcattgaatgccatggtcgtgggact tgtaattattatgcaaatgcttatagcttctggcttgctactatagaaagaaatgagatg ttcaagaagcctactccatcaactttaaaagcaggagaactgcgcacacacgttagccgc tgccaagtctgtatgagaagaacataa

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