Sarcophilus harrisii (Tasmanian devil): 100923534
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Entry
100923534 CDS
T02286
Symbol
SMARCC2
Name
(RefSeq) SWI/SNF complex subunit SMARCC2 isoform X1
KO
K11649
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C
Organism
shr
Sarcophilus harrisii (Tasmanian devil)
Pathway
shr03082
ATP-dependent chromatin remodeling
shr04714
Thermogenesis
shr05225
Hepatocellular carcinoma
Brite
KEGG Orthology (KO) [BR:
shr00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
100923534 (SMARCC2)
09150 Organismal Systems
09159 Environmental adaptation
04714 Thermogenesis
100923534 (SMARCC2)
09160 Human Diseases
09162 Cancer: specific types
05225 Hepatocellular carcinoma
100923534 (SMARCC2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
shr03021
]
100923534 (SMARCC2)
03036 Chromosome and associated proteins [BR:
shr03036
]
100923534 (SMARCC2)
Transcription machinery [BR:
shr03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
100923534 (SMARCC2)
Chromosome and associated proteins [BR:
shr03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
100923534 (SMARCC2)
PBAF complex
100923534 (SMARCC2)
GBAF(ncBAF) complex
100923534 (SMARCC2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SWIRM-assoc_2
SWIRM-assoc_3
SWIRM
SWIRM-assoc_1
Myb_DNA-binding
Myb_DNA-bind_6
Chromo
CD99L2
Motif
Other DBs
NCBI-GeneID:
100923534
NCBI-ProteinID:
XP_031797052
Ensembl:
ENSSHAG00000004114
LinkDB
All DBs
Position
5:84458234..84476180
Genome browser
AA seq
1261 aa
AA seq
DB search
MAVRKKDGGPNVKYYEAADTVTQFDNVRLWLGKNYKKYIQAEPPTNKSLSSLVVQLLQFQ
EEVFGKHVSNAPLTKLPIKCFLDFKAGGSLCHILAAAYKFKSDQGWPEPWHSLGSCLPTR
RRYDFQNPSRMDRNVEMFMTIEKSLVQNNCLARPNIFLHPEIDLKLLGKLKDIIKRHQGT
VTEDKNNASHIVCPVPGNLEEEEWVRPVMKRDKQVLLHWGYYPDSYDTWIPASEIEASVE
DAPTPEKPRKVHAKWILDTDTFNEWMNEEDYEVNDDKNPVSRRKKISAKTLTDEVNSPDS
DRRDKKGSNYKKRKRSPSPSPTPEAKKKNAKKGPSTPYTKSKRGHREEEQEDLTKDMDEP
SPVPNVEEVTLPKTVNTKKDSESAPVKGGTMTDLDEQEDESMETTGKDEDESSTGNKGEQ
AKNPDLHEDNVTEQTHHIIIPSYAAWFDYNSVHAIERRALPEFFNGKNKSKTPEIYLAYR
NFMIDTYRLNPQEYLTSTACRRNLAGDVCAIMRVHAFLEQWGLINYQVDAESRPTPMGPP
PTSHFHVLADTPSGLVPLQPKTPQGRQVDADNKAGRKGKELDDLVPETAKGKPELQTSAS
QQMLNFPEKGKEKPTDMQNFGLRTDMYTKKNVPSKSKAAASATREWTEQETLLLLEALEM
YKDDWNKVSEHVGSRTQDECILHFLRLPIEDPYLEDSEASLGPLAYQPIPFSQSGNPVMS
TVAFLASVVDPRVASAAAKSALEEFSKMKEEVPTALVEAHVRKVEEAAKMTGKADPSFGL
ESSGIAGTTSDEPDRIEESGTDETRAEGQVAEEKKEPKEPREGGATTEEEVKDKPSEAPK
KEEEKGKEGDLEKESEKSDGDPMADQEKEKEPKEGQEEVLKDVVEAEGERKTKVERDIGE
GNLSTAAAAALAAAAVKAKHLAAVEERKIKSLVALLVETQMKKLEIKLRHFEELETIMDR
EREALEYQRQQLLADRQAFHMEQLKYAEMRARQQHFQQMHQQQQQPPPNLPPGSQPVPPT
GASVPPPAHSLAVAPPSVASTPAGTGAPPGSLAPTEQMGQTGSASGSQQLQPTGASQPGT
VPPGAPPTGPHGPSPFPSQQTPPSMIPGAVPGSGHPSVAGNAPLGLPFSMPPPPIPPPPS
SIIPFSSLADSININLPPPPNLHGHHHHLPFAPGTLPPPNLPVSMASPLHPNLPATTTTM
PSSLPLGPGLGSAAAQSPAIVAAVQGNFMPSASLLPDPGTPIPPDPTAPSPGTVTPVPPS
Q
NT seq
3786 nt
NT seq
+upstream
nt +downstream
nt
atggcggtgcggaagaaggatggcggccccaacgtgaagtactacgaggccgcagacacc
gtgacccagtttgataacgtgcggctgtggcttggcaagaactacaagaagtacatccaa
gctgaaccacccaccaacaagtccttgtctagcctagtggtacagttgctacaattccag
gaggaggtatttggcaaacatgtgagcaacgcgccacttaccaagcttccgatcaaatgt
ttcctagatttcaaagcaggaggttccctatgtcatattcttgcagctgcttacaagttc
aagagcgaccagggatggcctgagccatggcactcactgggctcttgccttcccacaagg
cggcgttacgatttccagaatccatcccgcatggaccgcaacgtggaaatgttcatgact
attgagaagtcccttgtgcagaataactgtttggctcgacccaatattttcctacaccca
gagattgaccttaagctgctagggaaattgaaggacattatcaaaaggcatcagggaaca
gtcactgaagataagaataatgcctcccatatagtatgccctgttcctgggaacctggag
gaagaggaatgggtacggccagtcatgaagagagacaaacaagttctgttgcactggggc
tactatcctgacagttatgacacttggattccagcaagtgaaattgaagcttctgtggaa
gatgcacccacacctgagaaaccaagaaaggttcatgcaaaatggattctggacacagat
actttcaacgaatggatgaatgaagaagattatgaagtgaatgatgacaaaaaccctgtg
tctcgccgtaaaaagatctcagctaagacactgacagatgaagtgaatagcccagattca
gacagacgggacaagaagggcagtaactacaaaaaaagaaaacgctctccctccccttct
ccaacccctgaagcaaaaaagaaaaatgcaaagaagggcccttcaacaccttatactaag
tcaaagcgtgggcatcgagaagaagaacaagaggatttgaccaaggatatggatgagccc
tcacctgtccccaatgtggaagaagtaacactgcccaagacagtcaataccaagaaggat
tctgaatcggcaccagtcaaaggaggcaccatgactgatcttgatgaacaggaagatgag
agcatggagaccacaggcaaggatgaggatgagagcagtactggcaacaagggtgaacag
gcaaagaatcctgaccttcatgaagacaatgtgactgaacagactcaccacatcatcatc
cctagctatgcggcctggtttgactataatagcgtccatgctattgagaggagggctctg
ccagaattcttcaatggcaagaataaatccaagactccagagatctacctggcctatcga
aacttcatgattgacacctaccgactgaacccccaagagtacctcacctccactgcctgc
cgccggaacctggcaggtgatgtctgtgccatcatgagagtccatgccttcctggaacag
tggggtctaatcaactaccaggtggatgcggagagcagaccaactcccatggggccccca
cctacttctcacttccatgtccttgctgacacaccttcagggctagtaccactgcagccc
aagaccccccagggccgccaagttgatgctgacaacaaagctgggcgaaaaggcaaagaa
ctagatgacctggtgccggagacagctaaggggaagccagagctgcagacctcagcttcc
cagcagatgctgaactttcctgaaaaaggcaaagagaaacccacagacatgcagaatttt
ggactgcggacagatatgtacaccaaaaagaatgtaccctccaagagcaaagctgcagcc
agtgcaactcgtgagtggacggagcaagagacactgcttcttcttgaggcactagagatg
tacaaagatgactggaacaaggtgtcagagcatgtagggagtcgaacacaggatgaatgc
atactacacttcctccgtttgcctattgaagacccatacctggaggattcagaggcctcc
cttgggccccttgcctaccagcccatccccttcagccagtctggtaaccccgtcatgagc
actgttgccttcctggcctcagtggttgatcctcgagtggcttctgctgccgccaagtct
gctttagaagagttctccaagatgaaagaagaggttcccacagccctggtggaggctcat
gttcgtaaggttgaagaagcagccaagatgacaggcaaggcagacccatcctttggtttg
gagagtagcggcattgcaggaaccacctctgatgaaccagataggattgaagaaagtggg
actgatgagactcgagcagaaggccaggttgcagaggagaaaaaagagcctaaggaacct
cgggaaggaggtgctaccacagaggaagaagtaaaggataaaccaagtgaagcacccaaa
aaggaagaagagaaggggaaggaaggtgaccttgaaaaagaatcagagaagagtgatggg
gaccccatggctgaccaggaaaaagagaaggagccaaaagaaggtcaagaggaggtgcta
aaggatgtagttgaggctgagggtgagaggaaaaccaaagtggagcgggacattggcgaa
ggcaacctctccactgcagctgctgctgccttggcagcggctgctgtaaaagccaagcac
ttagctgcagttgaggagagaaagatcaagtctctggtggccctgctagtggaaacccag
atgaaaaagctggaaatcaaacttcggcactttgaagagctggagactatcatggaccgg
gagcgagaggctctggagtaccagaggcagcagctcctggctgacagacaagccttccat
atggaacagctgaagtatgcagagatgagggctcggcagcagcatttccagcaaatgcac
caacagcaacagcagcctcccccaaacttaccccccggctcccagccagtaccacccaca
ggagcttctgtgccaccccctgcccatagcttagctgtggctccaccctctgtggcctct
acccctgctggtactggggctcctcctggcagcttggctcccactgaacagatgggacag
acaggatcagcctcagggtcacaacagctacagccaactggagcttcccagcctggtaca
gtcccacctggagcaccccccactggaccccacggcccctcaccgttccccagccaacaa
actcctccctcaatgataccaggggcagtgccaggcagtgggcacccaagtgtggccggt
aatgctcctttgggtttgcctttcagcatgccacctcctcctattcctcctcctccgtca
tccatcatcccatttagtagcctagctgattccatcaatattaacctccctcctcctcct
aacctgcatgggcatcaccatcatctcccgtttgccccgggaaccctccccccacctaac
ctgcctgtgtccatggcgagccctctacatcctaacctgccggcgaccaccaccaccatg
ccatcctccttgcctctcgggccagggctgggatccgctgccgcccagagccctgctatt
gtggcagctgttcagggcaacttcatgcccagtgccagcctgctgccagaccctggcacc
ccaatcccgccagatcccacagcccccagcccaggtacagtcaccccagtgccaccttcg
cagtga
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integrated database retrieval system
