Sarcophilus harrisii (Tasmanian devil): 100923697
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Entry
100923697 CDS
T02286
Symbol
SKIV2L
Name
(RefSeq) helicase SKI2W isoform X1
KO
K12599
antiviral helicase SKI2 [EC:
5.6.2.6
]
Organism
shr
Sarcophilus harrisii (Tasmanian devil)
Pathway
shr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
shr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
100923697 (SKIV2L)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
shr03019
]
100923697 (SKIV2L)
Enzymes [BR:
shr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
100923697 (SKIV2L)
Messenger RNA biogenesis [BR:
shr03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
100923697 (SKIV2L)
mRNA degradation factors
3'-5' decay
Ski complex
100923697 (SKIV2L)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DSHCT
Ski2_N
MTR4_beta-barrel
DEAD
MTR4-like_stalk
DEXQc_Suv3
Helicase_C
ResIII
DUF3516
Motif
Other DBs
NCBI-GeneID:
100923697
NCBI-ProteinID:
XP_003768961
Ensembl:
ENSSHAG00000008963
UniProt:
G3W4M7
LinkDB
All DBs
Position
4:complement(284988079..284998880)
Genome browser
AA seq
1249 aa
AA seq
DB search
MLETERLVLPPRGPLDLPLCALELGCTGRWELLSQPQVSDSPAGTLSHGLPPCAPELQGE
TEQLFLSSPEWLPLHGVERVAWKWQRKTDPWSLLGLPGAPVPSDLQAQRHPTTGRVLGYR
EVLLEDTNLSATTSLSLRRPPGPSSQALWGNPTHYPFWPGGMDEPTIADLSICGDSEEEI
DFEKDLLTIPPGFKKGVGFTPKNNSTPASGLLSLSHLLEPLELGGGEEEEEETSGRLGGP
GGDSVTASTSEPPLVHASSLEDLVLKDASAPLSPPEPPKPPVLEQWAIPVDITSPVGDFY
RIIPQPAFQWPFEPDVFQKQAILHLERHDSVFVAAHTSAGKTVVAEYAIALAQKHMTRTI
YTSPIKALSNQKFRDFRNTFGDVGLLTGDVQLHPEASCLIMTTEILRSMLYSGSDVIRDL
EWVIFDEVHYINDAERGVVWEEVLIMLPDHVSIILLSATVPNALEFADWIGRLKRRHLYV
ISTAARPVPLEHFLFTGNSPKTQGELFLLLDSRGVFHTKGYYAAVEAKKERTSKHAQTFG
AKQPMHQGGPGQDRGIYLSLLASLRSRAQLPVVVFTFSRGRCDEQASGLSSLDLTTSSEK
SEIHLFLQRCLARLRGSDRQLPQVLHMSELLRRGLGVHHSGILPILKEIVEMLFSRGLVK
VLFATETFAMGVNMPARTVVFDSMRKHDGATFRDLLPGEYVQMAGRAGRRGLDPTGTVIL
LCKGRVPEMADLHRMMLGKPSQLQSQFRLTYTMILNLLRVDALRVEDMMKRSFSEFPSRK
DSKAHEQTLAELTKRLGDLEEPDTSGQLADLPEYYSWGEELTETRGLIQRRIMESVNGLK
SLSVGRVVVVKNQEHRNALGVILQVSSDTTNRVFTTLILCEKQPPEGPLPGSSRSLDVPY
PDDLVGHKLFLPEGPCDHTVAKLQPSDIIAITTKMLRVNGERILEDFSKRQQPRFKKDPP
SPLVTSAVQEMLRLAQAHPAGPPTLDPVNDLQLKEVLVVEGGLRARKLEELIRGAQCVHS
PRFPAQYLRLQERVQIQKEMERLRFLLSDQSLLLLPEYHQRVEILRTLGYVDGAGTVKLA
GRVACAMSSHELLLTELMFDNALSALRPEEIAALLSGLVCQSPGDPGDQLPSTLKQGIER
VKDVARRIGEVQVSCGLNQTVEEFVGELHFGLVEVVYEWARGMPFSELAGLSGTPEGLIV
RCIQRLAEMCRSLRGAARLVGEPVLGAKMEAAATMLRRDIVFAASLYTQ
NT seq
3750 nt
NT seq
+upstream
nt +downstream
nt
atgctggagacggagcgtctggtactgccccctcgggggcccctggatttgcctttgtgt
gcgctggagctcggatgcactgggcgctgggagcttttgagccagcctcaggtctcggat
tcgccggcgggcaccctctctcatgggctaccaccctgtgccccagaactgcaaggagag
actgagcaattgtttctgtcatcccctgaatggctgcccctgcatggtgtggaacgtgtg
gcctggaaatggcagagaaagacagatccctggtctctcctggggctgccaggagcacct
gtcccatcagatctgcaggctcaaagacacccaaccaccggcagagtcctgggctacaga
gaggtcctgctggaggacacaaacctttcggccacaacttccctgtctctacgccggccc
ccaggaccctcatcccaggctttatggggcaacccaacacactatccattttggccaggt
gggatggatgaacctaccatagcagatctgagcatttgtggggactctgaggaagagatt
gactttgagaaagatctccttaccattcccccaggcttcaagaaaggtgtaggcttcact
ccaaagaataactcaacccctgcttctggccttctcagtcttagccatcttctcgaaccc
ctggaacttggtggaggggaggaagaggaagaagagacttcaggaagattggggggtcct
ggaggggacagtgttacagcctccacttctgagcccccactggttcatgctagtagcctg
gaggatttagtcctaaaggatgcatcagcccccttgtcacctccagaacctccaaagccc
ccagtcttggaacagtgggctattcctgtggatattacttcacctgtgggagatttctac
cggattatcccccaacctgccttccagtggccgtttgaaccagatgtatttcagaaacag
gctattctgcacctggagagacatgactctgtatttgttgctgctcacacatctgcagga
aagactgttgtggctgaatatgccattgcccttgcccagaaacatatgacccgtaccatc
tatacatcacctatcaaggccctgagtaatcagaaatttagagatttccgaaacaccttt
ggtgatgtgggactcctcacaggggatgtccagctacatcctgaagcttcctgcctcatt
atgaccacagagatccttcgctccatgctgtatagtggttcagatgtgattcgagacctt
gaatgggtgatatttgatgaggtccattacatcaatgatgctgagagaggagtagtgtgg
gaagaagtcctcatcatgcttcctgatcatgtttccatcattctcctcagtgctactgtg
cccaatgcccttgaatttgcagattggattgggaggctgaagcgtcggcatctctatgtg
atcagcacagctgcccgaccagttcccttggaacattttctattcactgggaatagtcca
aaaacccaaggagagctttttctgcttctggattcacgaggagtttttcacactaaggga
tactatgcagctgtggaggccaagaaagaaaggactagcaaacatgcacagacctttggg
gcaaagcagccaatgcaccaaggtgggcctggacaggaccgaggcatatacctgtccctc
ttggcctccctgcggagccgtgcccagctccctgtggtggtgttcaccttctcccggggc
cgctgtgatgagcaggcgtcaggtctcagctcccttgaccttaccaccagctctgagaag
agtgagatccaccttttcctgcagcgatgccttgcacgacttcgaggctccgaccgccag
ctacctcaggtactgcatatgtcagaactccttcgccggggtctaggtgtacaccacagc
ggtatattgcccattctcaaggagattgtggaaatgctcttcagtcgtggtttggtcaag
gtcctatttgctacagaaacctttgccatgggtgtgaacatgccagcacggactgtggtg
tttgattctatgcgcaagcatgatggtgcaactttccgtgacttgctccctggggaatat
gtacagatggcagggcgggcagggcgtcgtggtctggaccctacaggcactgtcatccta
ctctgtaagggacgtgtgcctgagatggctgatctgcataggatgatgttgggaaagcct
tcccagctacagtcccaatttcgcctcacatatacaatgattcttaacttgcttcgggtt
gatgccctcagagtggaagatatgatgaagagaagcttttctgagttcccttcaagaaag
gacagcaaggcacatgagcagactttggcagaattgacaaagagacttggggacctagag
gaaccagatacctcagggcagcttgctgatcttcctgagtattacagctggggggaagag
ctgacagagactcggggcctaatccagcgacggatcatggaatcagtgaatgggttgaaa
tctctgtcagtgggaagagtggtagtggttaagaatcaggagcatcggaatgcacttgga
gtgatcttgcaggtctcctcagataccacaaaccgagttttcacaaccttgattctctgt
gagaagcagccccctgaggggccactgcctggcagttccagatcccttgatgttccctat
cctgatgatttagtgggtcacaagctattcctccctgaagggccttgtgatcatactgtg
gcaaaacttcagccaagtgacatcattgctatcacaacaaagatgctacgggtgaatggg
gaacgaattttggaagattttagcaagaggcagcagccaagattcaagaaggaccctccc
tctccattggtgacctctgctgttcaggagatgctccgattggctcaggcacatccagcg
ggaccccccactctggatccagtcaatgatttacaactgaaggaggtgttagtagttgag
ggtgggctccgtgctcggaagctagaagaattgattcgaggtgcccagtgtgtacatagt
cccaggtttccagcccagtacctgagactgcaggaacgtgtgcagatccagaaggagatg
gaaagattacggtttctactttcagaccagtcattgctcctgctgccagagtatcatcag
cgagtggagatcctgaggacattgggctatgtggatggggcagggaccgtgaagctggca
ggaagggtggcatgtgccatgagtagtcatgaactgcttctgacagagctcatgtttgac
aatgcgctgagtgcccttcggccagaagagattgctgctctgctatctggccttgtctgc
caaagtcctggagatcctggagaccaattgccaagcactcttaaacagggcatagagcgt
gtcaaggatgtggcccggcggattggtgaagttcaagtatcctgtggcctaaaccagact
gtggaagagtttgtgggagaactacactttgggctggtagaagttgtctatgagtgggca
cgaggcatgcctttctctgagctggcagggctatcagggaccccagaaggtttgattgtc
agatgtatccagcgcctggcagagatgtgtcgttcattgcgaggggctgcccggctggtg
ggagaacctgtgctaggtgctaagatggaggcagctgccacaatgctccgtcgtgacata
gtttttgctgctagtctctatacccagtga
DBGET
integrated database retrieval system
