Sarcophilus harrisii (Tasmanian devil): 100924273
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Entry
100924273 CDS
T02286
Symbol
ALMS1
Name
(RefSeq) Alstrom syndrome protein 1 isoform X1
KO
K16741
alstrom syndrome protein 1
Organism
shr
Sarcophilus harrisii (Tasmanian devil)
Brite
KEGG Orthology (KO) [BR:
shr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
shr03036
]
100924273 (ALMS1)
09183 Protein families: signaling and cellular processes
03037 Cilium and associated proteins [BR:
shr03037
]
100924273 (ALMS1)
Chromosome and associated proteins [BR:
shr03036
]
Eukaryotic type
Centrosome formation proteins
Other centrosome associated proteins
100924273 (ALMS1)
Cilium and associated proteins [BR:
shr03037
]
Primary cilia and associated proteins
Other primary cilia associated proteins
100924273 (ALMS1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ALMS_motif
Motif
Other DBs
NCBI-GeneID:
100924273
NCBI-ProteinID:
XP_031805546
LinkDB
All DBs
Position
2:complement(18974028..19080519)
Genome browser
AA seq
2404 aa
AA seq
DB search
MESWQPLKEEVESTHSLLTPATRLSMRREDSDLSEFPSVEEGVLIIPEEDGKEWAGEASC
IPFLATEDRITSSRIPLLESSLTPRVWNETLFQQSELEFIPLRGIPDLSEVSESDSRQAQ
VMEALCPPSERSSDVGPRRVSPQEMAGIVARSRGVHFPQQQGKSQSAASPETGSKLLTSY
GSDSVQTLASPVSLRRWPTSLPTGQNPSGPTEDGASLDHRISHAFLSPCLEKNGLDFSLS
SASSLCERYKNLEEYKMKSKLDCLQSNESQVKRSGQADSLLSEGELSSKFTSHSLCPGAS
QGQSVQNPPGPHVKFSGHDDNPRAGSSGVTFPSSSHHSVRFKLDDVPKSGPKEGLDANEN
LAFHEIVASIEPTASKNPTAIQNLLDWKQHISPLRTPLSSQTEKSSSGQVPEPLCQSTPV
VIPAQNFTPQAAQRVISAPSKVQPPFVSPNEELPHSSPRNLAAWKCQPSSENQDGSSGPS
EQPVGNLPYVLSLSQGFSPTLMNMLRRDISRSFTRQGEASQLRVTFKDHALQTDLVREDD
SSAQGPQLDENGIIFSGRVAEMLRDEKYNVSGLLKTKEPLQNSPLPLGGPESCSAFADQF
RGGPSKASIPPLAFPQTKLDKSTSTTDDDPESAEPLLDGTELRRYQDRPSPAPPEREASH
CFIDSHPSVPATTSVPVRVEESQSLSPDPLRIYYRNPKITSNVRSNFNSGVSHVTWSIPV
EPGSHQDLPMLPETSQRPDSRGQTLSQIESTPETSSKAEEKSFPPANFSHKGDFGIISKR
VQKLIDHWDSRLLDGGAHATPLPVPTSMSVGQYRKEGMVTVSDIKETPVSVPQDGKKGKG
LSENEGKMDRGLHTLLVEAESIARKRFSNSPGLHSDLLSSRLSRVDDSRKAPLAKDSIAL
SQRSARDDNRIPATTVETNVANHLTSQRDTGKTSVREVANKARGASRQPLKHYDTARSVP
RCEPDRSSTFAGPEISGPGTPLTSSHSSRDSPRARASYVWDPICDGFFGYLPHIPAHVCM
GDLQDRETTYESDDGCSSEDSLAAHVRHLLRCEPPECFATQMLRNAEEEECRVRARAWCL
KFNLATECGDCMTELNEADLRKVEEIKASMFGCGRPLDLFQGLPCPVGIRNISEKCDHFF
IEAHENGWFRPMANEQFGNSCREFRSNEYAEMSQTQPMASWTKRCGSHAKSALQTSQSKA
WSFSGSGSHQPFLSSTSDESHYVSRESPRSLHEEMETKEVESVGPAAVSSREPISPPSRP
SSKSCSEAFRHSLCCPSAPVVVRSDRGQSLPAVTWRANRPVSKSPLPISNMILATAVRKD
PGLVGNHHDRASGDLSVVTTSLKEKESPAAPAITTTAKPQASVKESLLLDKQDLARCMSL
KSLGIHDKGIRVSEEFPPSISPKEQAEHCQPRSVPPTDNMVGPGCSLQTSLSQHQASSVE
REDQLKQKMHSLIVANVEAESSMTVRPNSPTPGGETSPVPSSVLSPKQRAVSYLRITLSP
KTSNAKLDDEILKKREHELDSGARTGLNDSLSTSKSRCLVPLEPAPKELAIIPLSDKEEF
VNGIYHKNSQPSKSFSRHIQVNIADLEAYSKGIQNTQGRVTSHNLRNADCDTSLKLSSDA
VTQITTESPEKTTLSSEIFINSQSHSILKKPSHYPTAQFSLLPYKPPGSAEMYYVPHLTE
PLQYPVAKSDTTLESTHSGSNDAIAPEFPPDALGTRDENVCDIVTIKHKEGIYSKKTACK
SAWTEEQNPPPEKASESKNHLELENTTHSVFKSAQFYFHHPVHHQHDHDFSCCEPWGRGT
CRTHSRRDFFPYTDKDSSFCPPYETSADEHRFLPLRTDVDYSRVERYRWNITDNRVPGAR
QRPEENLQGDSKVSAARETAPRTLEPSRSLNELWNRFQERQKQQKPLESRSSDDLSLVER
LDRLAKILQKPMMLSLQASTSARDDRKGESARQQPRRKHQPKKRDPSDKSSSPSRSSFRL
LGGDPMMPTLAQQPGLDSVSLISSDSRPSPEPAEPASESDVSAQTDGDTGPLREVSSDMS
FASPARTVQTQTYEVPKRQQKPLSERQREGSRKVAKWKKTPPAPQVRRRVLQVDAIISSD
SFSTASSTWSSSSSPKEKHNVRMLNKGVQTGEVEIVRSTRKHTRDFGVTFPTPKYNATGT
RGDSCMNNSSPGSNLEDKKPLTIYMWTKKPRRSKPHCCEGVSWFIPAENPRQAKKENQPG
PGPSWFAPLIHSKPWRQPLREKNWQTESSSGRQAGLPGLEQDKEAPPRFVKAGLQESLER
LRPDFISRSKARVKRLRLITEERKLQRLLQRERDQLFNTEEQQRESQDMAGFLSKKGYVT
MRNRIITKKEMVQRSKRLYEQLPEVRKRREEEQRKSVYSTYRFRAQLYKMKITNRVLGRK
VPWD
NT seq
7215 nt
NT seq
+upstream
nt +downstream
nt
atggaatcttggcagccccttaaagaagaagtggaaagtacccacagcctgcttacacct
gcgaccaggctcagtatgagaagggaagacagtgatctgtctgaatttccctctgtggag
gagggagttctgattatacccgaagaggatggaaaggaatgggctggagaggcttcatgt
atcccatttttagccactgaggacagaattacctcctcccgtatcccattgttggaatca
tctctgacccccagggtttggaacgagactctgtttcagcagagtgagttggagttcata
cctctgagggggattccggatctatctgaagtttcagaatctgactccagacaggcgcaa
gtcatggaagccttgtgtccgccctctgaaaggtcttctgacgtgggcccccgcagggtg
tcgcctcaggagatggcgggcatcgttgcccgcagtcggggtgtgcatttccctcagcag
caggggaagagccagtctgctgcttcccctgagacgggcagcaagctgctcacctcgtat
ggctcagacagtgtccagaccctggcttctcctgtgtccctgaggaggtggccgacttcc
ctgcccactgggcagaacccgagcgggcccacagaggatggggcttctctggaccacaga
atttcacatgctttcctctctccttgcctagagaaaaatggactcgatttttctttatct
tcagctagctctctttgtgagcggtataagaacttagaagagtataagatgaagtccaaa
ctggattgtttgcagtcaaatgaaagccaagttaaaaggtcggggcaggcggactctcta
ctttcagaaggagagctctcttccaagtttacatcccattccttgtgccctggagcttca
caaggccagtctgtgcagaatcctccagggcctcatgtaaaattttcagggcacgatgac
aatcctagagcaggatcttctggcgttacttttccctctagcagccaccattctgtgaga
tttaagttggatgatgtgccaaaatcaggcccaaaggaaggtcttgatgcaaatgaaaat
ctggccttccatgagattgtggcctctatagagcccacagcgagcaaaaaccccaccgcc
attcagaacttactagattggaagcaacacatttctcccttgagaactcccttgagttct
caaactgaaaagtcttcatccggacaagtacctgagccactctgtcagtcaactcctgtg
gtaattccagcccaaaatttcactccacaagcggctcagagagtaatttctgccccttca
aaagttcagcctccttttgtttccccaaatgaagaattaccacactctagcccaagaaac
cttgctgcttggaaatgccaaccctcttcagagaatcaggatggaagcagtgggcctagt
gagcagcctgttggcaatctgccttatgttttatcactgagtcaaggtttttctcctaca
ttgatgaacatgttacgccgcgatatttcgcgtagttttacacgtcaaggtgaagcttcc
cagttgagggtgacctttaaggaccatgcgcttcagacagatttagttagggaagatgac
agcagtgctcaaggtccacagctggatgaaaacggcatcatattcagtggaagagttgct
gaaatgctcagagatgagaagtataatgtgagtggcttactcaagacgaaggagcctctc
caaaacagcccgctccccttaggaggcccagaatcttgttctgcttttgctgaccagttc
agaggtggcccctcaaaagccagcattcctcctttggcttttcctcagaccaagcttgat
aagagcacgtctaccactgacgacgacccagaatctgcagaaccactgcttgatggtaca
gagctcagacggtaccaggaccgcccttcaccagcaccacctgagagagaggcaagccat
tgttttattgactcccacccatctgttcctgcaacaacgtctgttccagtacgggttgaa
gagtctcagtcactatctcctgatccgttgaggatatattataggaacccaaagatcact
tcaaatgtacgttccaactttaattctggcgtctctcatgtcacttggtccatccctgtg
gagcccggctcacaccaagatttaccaatgctccctgagacatcacagcgtccggattcc
cgggggcaaactctcagtcagattgagagtaccccagagacctcctctaaggctgaggag
aaatcatttccccctgctaatttcagtcataaaggggatttcggaatcatttccaaacgt
gtccaaaagctcatagatcattgggattcccgtctccttgatggcggggcccatgctacg
cctttgcctgtacccacatcgatgtctgtgggtcaatatagaaaggaaggcatggtgaca
gtttcagacattaaggagacccctgtttctgtgcctcaagatggaaagaaaggcaagggg
ctgtctgaaaatgaagggaaaatggacagaggcctgcacacccttctggtggaggcagaa
agtatcgcacggaagcggtttagcaattccccgggtcttcactctgacctcctctcttct
cggctcagcagagtggatgacagcaggaaggcccctttggccaaggactccatagcgctt
tcccagaggtctgcacgggatgacaataggatccctgctacaacagtggagactaatgtg
gcaaatcacttgacttcccagagggatactgggaaaacttcagttcgggaagtggcaaat
aaagccagaggagcctcgcggcagcccctcaaacactatgacacagcccggtcggtgccg
aggtgtgagcccgaccggagcagcaccttcgctgggcccgaaatatcagggccggggacc
cctctgacaagcagccattcgagtagagactctccccgcgcaagagcctcttacgtttgg
gatcccatttgcgatggcttttttgggtacctgccacatatcccagcccatgtgtgcatg
ggagatctccaagacagagagacgacttatgagagtgatgatggctgcagcagtgaggat
tccttggccgcccatgtgcgccatcttctgagatgtgagcctccggagtgcttcgccaca
cagatgctgcgcaatgctgaggaggaggagtgcagggtgcgcgcccgggcatggtgtctg
aagtttaatttggcgacggaatgtggggactgcatgaccgaactgaatgaagctgatctg
aggaaggtggaagagatcaaggctagcatgtttggctgtgggaggccactggacttattt
cagggtttaccatgtccagtggggataagaaatatctcagaaaaatgtgatcatttcttt
attgaggctcatgaaaatggctggttcagacctatggctaatgaacaatttggtaactct
tgtcgggaatttagatctaatgagtatgcagagatgagccagactcagccgatggcatct
tggactaagcgatgcggcagtcatgcaaagtcagctctccaaacttctcagtcgaaagct
tggagcttctctggatcgggaagtcatcagccattcctgagctccacatctgatgagtct
cattatgttagcagggagtctccaaggtcattacatgaagaaatggagacaaaggaggtg
gaatcggtgggacctgctgctgtgtcctcccgagaacccatcagtcctccatctcgtcct
tcttccaaatcttgctctgaggccttcagacattccctgtgttgtcccagtgctccagtt
gtggtccgaagtgatcgaggacaaagcctgcctgctgtcacatggagagctaacaggccc
gtgtccaagagccccctcccgatttcaaacatgatactggcaactgccgtaaggaaagat
ccagggcttgtgggaaatcaccatgatcgggcgtctggcgatttgtctgtagtcaccaca
agtttaaaagaaaaagaatccccagcagcgccagctattacaactactgccaagcctcag
gccagtgtcaaagagagcctgcttttggacaaacaggaccttgccagatgcatgagtctc
aagtcacttggaatacatgacaaaggtataagggtatctgaagaattccctcccagcatt
tcccctaaggagcaagcagagcattgccagcctaggagtgtcccacctacggataacatg
gtgggtcctggatgctccttgcagacttctctttctcagcatcaagctagttccgtggaa
agggaggatcagctgaagcaaaaaatgcactctttaattgtggcaaatgttgaagctgag
tcgagcatgacagtccgtccaaactccccaactccaggaggagaaacatcacctgtccct
tcttcagttttatcccccaaacaaagagcagtctcttaccttcgtataaccctctccccc
aagacttctaatgccaaactggatgatgaaattttaaagaaaagagagcatgaattggac
agtggtgctagaacaggacttaatgattcattaagtacctcaaagtcaagatgtcttgtg
ccactggaaccagcccctaaagaattggctattataccattatcagataaagaagaattt
gtaaatggtatatatcacaagaatagccagccttcaaaatccttttcaagacatatccaa
gtaaatattgcagatttggaagcatattctaaaggaatccagaacacacaaggccgtgta
acgtcacataacttaaggaatgcagactgtgacacttctctcaagctctcgtcagatgct
gtcactcaaataacaactgaaagtccagaaaaaaccacattgtcatcagagatttttatt
aattctcagtctcacagcattcttaagaagccatctcattacccaactgctcagttttca
ctgctgccctacaagcctcctgggagtgctgaaatgtactatgttccacacttaacggaa
cccctccagtatcctgtcgccaaatcagacaccactcttgaaagcacccactcaggctcc
aatgatgccattgctccagagttccctcctgatgctttgggcacaagggatgagaacgtg
tgcgacattgtaaccattaagcacaaggagggcatctatagcaagaagaccgcgtgtaag
tcagcctggacggaagaacagaatccccccccagaaaaagcctcagaatctaaaaatcat
ttggaacttgaaaatacaacccactctgtgttcaaatcggcccagttttactttcaccat
ccagtgcaccatcagcatgaccatgacttctcctgctgtgagccctggggaaggggaact
tgccggacccattccagaagagatttcttcccttacacagacaaagactctagtttctgt
ccaccttatgaaacctctgcagatgagcacagattcttgcccttacggactgatgtggat
tacagcagggtagagaggtaccgctggaacatcacggacaaccgagtgccaggggcccgg
cagaggcccgaggagaacctccaaggtgacagtaaagtgagtgctgccagagagactgct
ccacggacccttgagcccagccggtctctgaatgagctctggaacaggtttcaggaacga
cagaagcagcagaaaccgctcgaatcccgctcctcagatgacttgtccttggttgagcgc
ctcgatcgcctcgcaaagatccttcagaagcccatgatgctctctctgcaggcttccacg
tctgcccgagatgatcgcaaaggggagagtgcacggcagcagccaaggaggaagcaccag
ccaaagaagagagacccaagtgataaatccagttctccgtcccggtcttcctttagactg
ttggggggtgaccctatgatgcccacccttgcccaacagcccgggctggattctgtaagc
ttgatctcttcggattccaggccttcccccgagcctgccgagcctgcatcggagtcagac
gtgagtgcccagactgacggggatacgggccccctccgagaggtgagcagtgacatgtcc
ttcgctagccctgcccggacagtccagacacaaacgtatgaggtacctaagcggcagcag
aagcccttgtccgaaaggcagagagagggcagtaggaaagtagccaagtggaagaaaacg
cccccagctcctcaggtcagaaggagagtcctgcaggtggatgctatcatatcctcggac
tcgttctcaactgccagtagtacttggagttctagctccagccccaaggagaagcacaat
gtccggatgttaaataagggcgtccaaacgggggaagtggagattgtgagaagtacaaga
aaacacactcgagattttggggtgacttttccaaccccaaagtataacgcgactggtaca
agaggagacagttgcatgaacaattcgagtccaggaagcaatttagaagacaagaagcct
ctgacaatttacatgtggaccaagaagccgaggagaagtaaaccacattgctgtgaaggg
gtttcctggttcatccctgccgagaaccccaggcaggccaagaaggaaaaccagcccggc
cctggcccctcctggtttgcccccctgattcacagcaagccctggcggcagccccttcgg
gagaagaactggcagacggagagtagcagtgggcggcaggctgggctgccgggcctcgag
caggacaaggaggcccctccgcgctttgtgaaggcgggcctgcaggagtccctggagagg
ctgcggcccgacttcatctcccgctccaaggctcgagtgaagcggctgaggctgatcacg
gaggagcgcaagctgcagcgcctgctacagagggagcgcgatcagctgttcaacactgag
gagcagcagagggagtcccaggacatggccggcttcctttctaagaaaggttacgtgact
atgaggaacaggataataaccaagaaggaaatggtccagcgatccaaaaggttgtatgag
cagcttcctgaggtgaggaagaggcgagaagaagagcagaggaagtcggtctacagcact
taccggttcagggcccagctctacaaaatgaaaatcaccaaccgtgtactagggaggaaa
gtcccctgggattga
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integrated database retrieval system
