Sarcophilus harrisii (Tasmanian devil): 100924667
Help
Entry
100924667 CDS
T02286
Symbol
COL1A1
Name
(RefSeq) collagen alpha-1(I) chain isoform X1
KO
K06236
collagen type I alpha
Organism
shr
Sarcophilus harrisii (Tasmanian devil)
Pathway
shr04151
PI3K-Akt signaling pathway
shr04510
Focal adhesion
shr04512
ECM-receptor interaction
shr04611
Platelet activation
shr04820
Cytoskeleton in muscle cells
shr04926
Relaxin signaling pathway
shr04933
AGE-RAGE signaling pathway in diabetic complications
shr04974
Protein digestion and absorption
shr05146
Amoebiasis
shr05165
Human papillomavirus infection
shr05205
Proteoglycans in cancer
shr05415
Diabetic cardiomyopathy
Brite
KEGG Orthology (KO) [BR:
shr00001
]
09130 Environmental Information Processing
09132 Signal transduction
04151 PI3K-Akt signaling pathway
100924667 (COL1A1)
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
100924667 (COL1A1)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
100924667 (COL1A1)
09142 Cell motility
04820 Cytoskeleton in muscle cells
100924667 (COL1A1)
09150 Organismal Systems
09151 Immune system
04611 Platelet activation
100924667 (COL1A1)
09152 Endocrine system
04926 Relaxin signaling pathway
100924667 (COL1A1)
09154 Digestive system
04974 Protein digestion and absorption
100924667 (COL1A1)
09160 Human Diseases
09161 Cancer: overview
05205 Proteoglycans in cancer
100924667 (COL1A1)
09172 Infectious disease: viral
05165 Human papillomavirus infection
100924667 (COL1A1)
09174 Infectious disease: parasitic
05146 Amoebiasis
100924667 (COL1A1)
09166 Cardiovascular disease
05415 Diabetic cardiomyopathy
100924667 (COL1A1)
09167 Endocrine and metabolic disease
04933 AGE-RAGE signaling pathway in diabetic complications
100924667 (COL1A1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
shr00536
]
100924667 (COL1A1)
Glycosaminoglycan binding proteins [BR:
shr00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
100924667 (COL1A1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
COLFI
VWC
VWC2L_2nd
Motif
Other DBs
NCBI-GeneID:
100924667
NCBI-ProteinID:
XP_003768423
Ensembl:
ENSSHAG00000013444
UniProt:
G3WK23
LinkDB
All DBs
Position
4:329722710..329748259
Genome browser
AA seq
1454 aa
AA seq
DB search
MFSFVDPRLLLLLAVTAVLTHGQDEEDIPEGTCVQNGLKYHNGAVWKPETCQICVCDNGS
ILCDEIICEDVSNCPNVEYKDDECCPTCLGADAVSPSSPGETGVEGPKGDTGPRGERGLP
GPPGRDGIPGQPGLPGPPGPPGPPGLGGNFAPQMSYGYDEKSGGGMSVPGPMGPSGPRGL
PGPPGSPGPQGFQGPPGEPGEPGASGPMGPRGPAGPPGKNGDDGEAGKPGRPGERGPPGP
QGARGLPGTAGLPGMKGHRGFSGLDGAKGDSGPAGPKGEPGSPGENGAPGQMGPRGLPGE
RGRPGPPGPAGARGNDGATGAAGPPGPTGPAGPPGFPGAVGAKGEAGPQGSRGSEGPQGV
RGEPGPPGPAGSPGPSGNPGADGQPGAKGANGAPGIAGAPGFPGARGPSGPQGPSGAPGP
KGNSGEPGTPGNKGDPGAKGEPGPVGVQGPPGPAGEEGKRGSRGEPGPAGLPGPAGERGG
PGSRGFPGADGVAGPKGAPGERGAPGPAGPKGSPGESGRPGEAGLPGAKGLTGSPGSPGP
DGKTGPPGPAGQDGRPGPPGPPGARGQAGVMGFPGPKGAAGEPGKAGERGVPGPPGAVGP
AGKDGEAGAQGAPGPAGPAGERGEQGPAGSPGFQGLPGPAGPPGEAGKPGEQGVPGDAGA
PGPSGARGERGFPGERGVQGPPGPQGPRGANGAPGNDGAKGDAGAPGAPGGQGPPGLQGM
PGERGAAGLPGAKGDRGDAGPKGADGAPGKDGVRGLTGPIGPPGPAGPSGDKGESGPSGP
AGPTGARGAPGERGEPGPPGPAGFAGPPGADGQPGAKGEPGDAGAKGDAGPPGPAGPTGA
PGPAGNVGAPGPKGARGSAGPPGATGFPGAAGRVGPPGPSGNAGPPGPPGPAGKEGGKGP
RGETGPIGRPGEVGPPGPPGPSGEKGSPGADGPAGAPGTPGPQGIAGQRGVVGLPGQRGE
RGFPGLPGPSGEPGKQGPSGVSGERGPPGPAGPPGLAGPPGESGREGSPGAEGSPGRDGA
PGPKGDRGETGPAGPPGAPGAPGAPGPVGPAGKAGDRGETGPSGPAGPAGPTGARGPAGP
QGPRGDKGETGEQGDRGMKGHRGFSGLQGPPGPPGSPGEQGPSGASGPAGPRGPPGSAGA
AGKDGLNGLPGPIGPPGPRGRTGDAGPAGPPGPPGPPGPPGPPSGGFDFSFLPQPPQEKA
HDSGRYYRADDANVRDRDLEVDTTLKSLTQQIENIRSPEGTRKNPARTCRDLRMCHSDWK
SGEYWIDPNQGCNLDAIKVFCNMETGETCVYPTQPSVAQKNWYINKNPKEKKHVWFGESM
TDGFQFEYGGEGSDPADVAIQMTFLRLMSTEASQNITYHCKNSVAYMDQQTGNLKKALLL
QGSNEIEIRAEGNSRFTYGVIEDGCTSHTGNWGKTVIEYKTTKTSRLPIIDVAPMDVGAP
NQEFGFDISPVCFL
NT seq
4365 nt
NT seq
+upstream
nt +downstream
nt
atgttcagctttgtggatccccggcttctgctcctcttagcagttactgccgtcctcacc
catggccaagacgaagaagacattccagaaggcacctgtgtacagaatggcttaaagtac
cataacggagcagtgtggaaacccgagacctgtcaaatctgcgtctgcgacaatgggagc
atcctgtgtgatgaaataatctgtgaagacgtttccaactgccccaacgtggagtacaag
gacgatgagtgctgccccacctgccttggtgccgatgctgtttcaccatcctctcccgga
gaaacaggagtcgagggtcccaaaggagatactgggccccgaggtgaaaggggactccca
ggcccacctggaagagatggcatcccaggacagcctggtctccccggcccccccggcccc
cctggtccccctggccttggaggaaactttgctccccaaatgtcttatggctatgatgag
aaatcaggtggcggcatgtctgtgcctggacccatgggtccctctggtcctcggggtctc
ccaggtccccccggctcacctggtccccaaggtttccaaggcccccctggtgaacccggc
gagcctggagcttcaggtcccatgggtccccgaggtcctgcaggtccccctggcaagaat
ggagatgatggtgaagctggcaaacctggtcgccccggtgaacgtggtcctcctggtcct
cagggtgctcgaggtctgcccggaactgctggtctccctggcatgaagggacaccggggt
ttcagtggtttggatggtgccaagggagacagtggtcctgctggtcctaagggtgagcct
ggcagccctggtgaaaatggagctcctggacaaatgggccctcgtggtctgcctggtgag
agaggccgccctggaccccctggcccagctggtgctcgtggtaacgatggtgcaacaggt
gctgctggacccccaggtcctactggtcctgctggtccccctggtttccctggtgctgtt
ggtgctaagggtgaagctggtcctcaaggatcccgtggctctgaaggtccccaaggtgtc
cgtggagagcccggtccccctggccctgctggttcccccggcccctctggtaaccctggt
gctgatggacaacctggtgccaaaggtgccaatggtgctcctggaattgctggtgctcct
ggctttcccggtgcccgtggtccttctggacctcagggtcccagtggtgctcccggtccc
aagggtaacagtggtgaacctggtacccctggtaacaaaggtgaccccggtgccaaagga
gaacccggccccgttggtgttcaaggacccccaggccctgcaggtgaggaaggcaagaga
ggatcccgtggtgaacctggacctgctggtctgcctggcccagctggcgaacgaggcggt
cccggaagccgtggtttccctggtgctgatggtgttgctggtcctaagggtgctcctggt
gaacgtggtgctcctggccctgctggtcccaaaggatctcctggtgaatctggtcgtcct
ggggaggctggtctacctggtgccaagggtctgactggaagccctggaagccctggtcct
gatggcaaaactggtcctcccggccctgctggccaagatggtcgtcccggacctccaggc
ccccctggtgcccgtggtcaagctggtgtaatgggattccctggacccaagggtgctgct
ggagaacctggcaaggctggagagagaggtgttcctggaccccctggtgctgtgggcccc
gctggaaaagatggagaagctggtgctcagggtgcccctgggcctgctggtcccgctggt
gagagaggtgaacagggtcctgctggctctcctggattccagggtctccctggccccgct
ggtcctcctggtgaagctggcaaacctggtgaacagggtgttcctggagatgctggtgcc
cccggcccctctggtgcaagaggtgagagaggtttccccggagaacgcggtgtccaaggt
cctcctggccctcagggtccccgtggtgccaatggtgctcctggaaatgatggtgctaag
ggtgatgctggtgctcctggtgctcccggtggccaagggcctcctggtctgcagggaatg
cccggtgaacgtggtgcagctggtcttcccggtgccaagggtgacagaggtgatgctggt
cccaaaggtgctgatggtgctcctggcaaagatggtgtccgtggtctgactggtcctatt
ggtccccctggccctgctggtccttctggtgacaagggtgaatctggtcccagtggccct
gctggtcccaccggagctcgtggtgcccctggagaacgtggtgagcctggcccccctggt
cctgctggctttgctggtcctcctggtgctgatggccaacctggtgctaaaggtgaacct
ggtgatgctggtgctaaaggtgatgctggtccccctggccctgctggacctactggtgct
cctggccctgctggtaatgttggtgctcccggacccaaaggtgcccgtggcagtgctggc
ccccctggtgctactggtttccctggtgctgctggaagagttggtccccctggcccctct
ggtaatgctggaccccctggacctcctggccctgctggcaaagaaggcggcaaaggcccc
cgtggtgagactggccctattggacgtcctggtgaagtcggacctcctggtccccctggc
ccaagtggagagaagggatctcctggtgctgatggtcctgctggtgctcctggtactcct
ggacctcaaggtattgctggacagcgtggtgtggttggtctgcctggacagagaggagaa
agaggtttccctggtcttcctggtccctctggcgaacctggaaaacaaggtccttctgga
gtaagtggagaacgtggcccccctggccctgctggaccccctggattagctggaccacct
ggtgaatctggacgtgagggctctcctggtgctgaaggttccccaggtcgtgatggagct
ccaggccctaagggtgatcgtggtgaaactggtcctgccggcccccctggtgctcctggt
gcccctggcgctcctggccctgtgggtcctgctggaaaggctggagatcgtggtgagact
ggtccctctggtcctgctggtcccgctggtcccactggtgcccgtggtcctgctggacct
caaggcccccgaggtgacaagggtgagactggcgaacagggtgacagaggcatgaaaggt
cacagaggtttctctggtctccagggtccccctggtcctcctggttctcctggtgaacaa
ggtccttctggagcttctggtcctgctggtccccgaggtccccctggctctgctggtgct
gctggaaaagatggactcaatggtctccctggccccattggcccccctggtccccgtggt
cgtactggtgatgctggtcctgctggtccccctggacctcctggcccccctggtcctcca
ggcccccccagcggtggcttcgacttcagcttcctgccccagccaccccaggagaaggcc
cacgactctggccgctattaccgagctgatgacgccaatgtacgtgaccgtgaccttgag
gtagacaccaccctcaagagcctgactcagcagattgagaacatccgcagtcccgagggt
acccgcaagaaccctgcccgcacctgcagagacctcaggatgtgccattcagactggaag
agcggagaatactggattgatcccaaccaaggctgcaacctggatgccatcaaggtcttc
tgcaacatggaaactggagagacctgtgtgtaccccactcaacccagtgtggcccagaag
aactggtacattaacaagaaccccaaggagaagaagcacgtctggttcggcgagagcatg
accgatgggttccagttcgagtatggtggagagggctccgaccctgctgatgtggctatc
cagatgaccttccttcgcctgatgtccactgaggcctcccagaacatcacctaccactgc
aagaacagcgtggcttatatggaccagcagactggcaacctcaagaaggccctgcttctc
cagggctccaatgaaatcgagatccgggctgaaggcaacagccgattcacctacggagtc
attgaggatggctgcacgagtcacactggaaactggggcaagacagtcatcgaatacaag
accaccaaaacctcccgcctgcccatcatcgatgtggcccccatggacgttggcgctccc
aaccaggaatttggcttcgacattagccccgtctgcttcctgtaa
DBGET
integrated database retrieval system
