Sarcophilus harrisii (Tasmanian devil): 100925158
Help
Entry
100925158 CDS
T02286
Name
(RefSeq) sodium channel protein type 5 subunit alpha isoform X1
KO
K04838
voltage-gated sodium channel type V alpha
Organism
shr
Sarcophilus harrisii (Tasmanian devil)
Pathway
shr04261
Adrenergic signaling in cardiomyocytes
Brite
KEGG Orthology (KO) [BR:
shr00001
]
09150 Organismal Systems
09153 Circulatory system
04261 Adrenergic signaling in cardiomyocytes
100925158
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
shr04040
]
100925158
Ion channels [BR:
shr04040
]
Voltage-gated cation channels
Sodium channel, voltage-gated (Nav)
100925158
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ion_trans
Na_trans_assoc
Na_trans_cytopl
PKD_channel
GPHH
IQ
CcmD_alt
Motif
Other DBs
NCBI-GeneID:
100925158
NCBI-ProteinID:
XP_031808347
LinkDB
All DBs
Position
1:13661561..13786499
Genome browser
AA seq
1981 aa
AA seq
DB search
MANFLLPRGANSFRRFTRESLAAIEKQIAEKQARSVTQESRETPTEEEKPRPQLDLQASK
KLPDLYGNPPRDLIGEPLEDLDPFYSTQKTFIVLNKGKTIFRFSATNALYILSPFHPIRR
AAVKILVHSLFSMFIMCTILTNCVFMAQHEPPPWTKYVEYTFTAIYTFESLVKILARGFC
LNAFTFLRDPWNWLDFSVIVMAYTTEFVDLGNVSALRTFRVLRALKTISVISGLKTIVGA
LIQSVKKLADVMVLTVFCLSVFALIGLQLFMGNLRNKCVRDFVVLNGTNGTVVSEGQIWE
SVEEYISSPENYLLKNGTSDVLLCGNSSDAGTCPEGYRCLKAGENPDYGYTSFDSFGWAF
LALFRLMTQDCWERLYQQTLRSAGKIYMIFFMLVIFLGSFYLVNLILAVVAMAYEEQNQA
TIAETEEKEKRFQEAMEMLKKEHEALTARGMDTVSRSSFEMSPLAPKTAPDRRSRRRTRQ
SSGTDDCGEDRFPKSDSDDGPRRMTLLGINHRNSLKRRSSHGSVFTFRRRDLGSETDFAD
DEISTPGESESHRASLLVPWPARRPSAQSQSSPGVPTAPNLIHNGKRNSAVDCNGVVSLL
AMGVPEATSPGGGLLSPVILEKPRPPDTTSVSEEVSKKQLLIPQRLSLEYFEEPHERQRA
LSAVSVITSALEELEESHRKCPPCWNRFAQNYLIWECCPLWLAIKKNVKFVVMDPFTDLT
ITICIVLNTLFMALEHYNMTPDFEEMLQVGNLVFTGIFTAEMTFKIIALDPYYYFQQGWN
IFDSIIVILSLMELGLSRMGNLSVLRSFRLLRVFKLAKSWPTLNTLIKIIGNSVGALGNL
TLVLAIIVFIFAVVGMQLFGKNYSELRHRISDSGLLPRWHMMDFFHAFLIIFRILCGEWI
ETMWACMEVSGQSLCLLVFLLVMVIGNLVVLNLFLALLLSSFSADNLTAPDEDGEMNNLQ
LALARIQRGLRFVKRTTWDFCCSLLKRPRDMATRKKATGPPAVPPAPSGLPSCVAGHGST
ELEKVPETARKETRFDETKPGNPNSRGAGKEPGEFPGDPESSVHVPIAVAESDIEDHEED
EDNSLCTEMESSKQQRHDDDTYSEGSTADMTNTADLLEKIADLGEDVKDPEDCFTEGCVR
RCPCCTVDTTQFPGRVWWRLRKTCYRIVEHSWFETFIIFMILLSSGALAFEDIYLEERKT
IKVLLEYADKMFTYIFVLEMLLKWVAYGFKKYFTNAWCWLDFLIVDVSLISLVANTLGFA
EMGPIKSLRTLRALRPLRALSRFEGMRVVVNALVGAIPSIMNVLLVCLIFWLIFSIMGVN
LFAGKFGRCINQTEGDLPLNHTFVNNKSECELHNSTGELYWIKVKVNFDNVGAGYLALLQ
VATFKGWTDIMYAAVDSRGCEEQPQWEYNLYMYLYFVIFIIFGSFFTLNLFIGVIIDNFN
QQKKKLGGQDIFMTEEQKKYYNAMKKLGSKKPQKPIPRPLNKYQGFLFDIVTKQAFDVTI
MFLICLNMVTMMVETDDQSPEKISILAKINLLFVGIFTGECVIKVIALRHYYFTNSWNIF
DFVVVILSIVGTVLSDIIQKYFFSPTLFRVIRLARIGRILRLIRGAKGIRTLLFALMMSL
PALFNIGLLLFLVMFIYSIFGMANFAYVKWEAGIDDMFNFQTFANSMLCLFQITTSAGWD
GLLSPILNTGPPYCDPNLPNTNNSRGNCGSPAVGILFFVTYIIISFLIVVNMYIAIILEN
FSVATEESTEPLSEDDFDMFYEIWEKFDPEATQFIEYSALSDFADALSDPLRIAKPNQIS
LINMDLPMVSGDRIHCMDILFAFTKRVLGESGEMDALKIQMEEKFMAANPSKISYEPITT
TLRRKHEEVSAVVIQRAFRRHLLQRSLKHASFLYRQQTSDGTLSGDDAPEHEGLIAYMMN
ANFSRRSGPPDSVSSTSLPPSYDSVTRATSDNIQARMSEYSQTDDFVDYPTSPDRDRESI
V
NT seq
5946 nt
NT seq
+upstream
nt +downstream
nt
atggcaaacttcttgttacctcggggcgccaacagcttccgccggttcactcgcgaatct
ctggcagccattgagaagcagatcgcagagaagcaggcccggagcgtcacgcaggagagc
cgagagaccccgaccgaggaggagaagccgcggccccagctggacctgcaggcgtccaag
aagctgcccgacctctatggcaatccgcctcgggacctcatcggggagcccctggaggac
ttggaccctttctacagcacccaaaagaccttcatcgtactgaacaaagggaaaaccatc
ttccgatttagtgccacaaatgccttgtacatcctcagccccttccaccccatccggaga
gcagcagtaaaaattttggttcattctctgttcagtatgtttatcatgtgtaccatttta
accaactgtgtgttcatggcacaacatgagcccccgccgtggaccaagtatgttgagtac
acttttaccgccatttatacctttgagtcattggtaaaaatactagcgcgaggattttgt
ctaaacgcattcacctttctccgcgatccatggaactggctcgatttcagcgtgattgtc
atggcatacaccactgaatttgtggacctgggcaatgtctcagccttacgaaccttccgc
gttctccgggccctgaaaactatatcggtcatttcaggcctgaagaccatcgtgggggcc
ctgatccagtcagtaaagaagctcgctgacgtgatggtcctcactgtgttctgcctgagc
gtctttgctctcatagggctccagcttttcatgggcaatttgcggaacaaatgtgtgcgg
gactttgtggtcctgaatgggaccaatggcactgtggtgtccgaggggcaaatctgggag
tcggtagaggagtacatcagcagcccagaaaactatttgttgaagaacggaacctcagac
gtgttgctctgtgggaacagctcagatgctgggacatgtccagagggttaccgctgcctg
aaggctggagaaaaccccgactacggctacaccagctttgactcttttggctgggccttc
ctcgcgctcttccgcctgatgacccaagactgctgggagcgtctctaccagcagacgctg
agatctgccgggaagatctacatgatcttcttcatgctggtcatctttctgggctccttc
tacctggtgaacctgatcctagctgtggtggccatggcctacgaggagcagaatcaggcc
actattgctgagaccgaggagaaggagaagcgcttccaggaggccatggagatgcttaag
aaggagcatgaggctctgacagccaggggcatggacactgtgtccaggagttcctttgag
atgtctccccttgccccaaagacagcaccagacaggaggagtaggaggagaacgaggcaa
tcctcagggacagatgactgtggggaggacagatttcccaagtcggactcagatgatggc
cctcggagaatgacccttctgggaatcaaccacaggaattccctgaaacgccgatccagc
cacggcagcgtcttcaccttccgccgaagagacctgggctcggagaccgacttcgcggac
gatgagatcagcactcccggggagagcgagagccaccgggcatccctcctggtgccctgg
cccgcccggcggcccagtgcccagagccagtccagcccgggtgtccccactgcccccaat
ctcatccacaatggcaaaagaaacagcgcagtggactgcaacggtgtggtctccctcctg
gccatgggggtcccggaggccacgtccccggggggcggcttgctgtctcctgtgattctg
gagaagccccgacccccagacacgacctctgtgtcagaagaagtcagtaagaagcagctc
ctgataccccagcgcctgtccctggagtactttgaggagccgcacgagcggcagcgggcc
ttgagcgccgtcagtgtcatcaccagcgccctggaagagctggaggagtcccaccgaaag
tgccctccctgctggaatcgctttgctcagaactatctgatctgggagtgctgcccgctg
tggctggccatcaagaagaacgtcaagtttgtcgtgatggaccctttcaccgacctcacc
atcaccatctgcatcgtgctcaacaccctgttcatggcgctcgagcattacaacatgact
cccgatttcgaggaaatgctgcaggttggcaacctggtgttcactggcatcttcacggca
gaaatgaccttcaagatcattgccctggacccctactactacttccagcagggctggaac
atcttcgacagcatcattgtcatcctgagcctcatggagttgggcctgtcccgcatgggg
aatctgtcagtgctgcgctccttccggctgctgagggtcttcaaactggccaagtcctgg
cccaccctgaacacgctcatcaagatcatcggcaactcggtgggggcgctggggaacctg
actctggtgctggccatcattgtcttcatcttcgccgtggtgggcatgcagctgttcggg
aagaactactcggagctgaggcaccgcatcagcgactcgggcctgctgccccgctggcac
atgatggacttcttccacgccttcctcatcatcttccgcatcctgtgcggggagtggatc
gagaccatgtgggcctgcatggaggtgtccgggcagtccctgtgcctgctcgtcttcctg
ctcgtcatggtcatcggcaacctggtggtcctgaatctcttcctggccttgctgctcagc
tccttcagcgcagacaacctgacggccccagatgaggatggggagatgaataatctccag
ctggccctggcccggattcaaaggggccttcgctttgtcaagcgcaccacctgggacttc
tgctgcagcctgctcaaacggccccgtgacatggccaccaggaagaaagccacaggcccg
ccagccgtgcccccggcccccagtggcctgcccagctgcgtggctggccacggctccaca
gagctggagaaggtgcccgagactgcccgcaaggagacaaggtttgatgagacgaaacca
ggcaacccaaactccaggggtgcaggcaaggaaccaggagagttccccggggacccagag
tcatctgtgcacgtgcccattgctgtagccgagtcagatattgaggatcatgaggaggat
gaggataacagtctctgcaccgagatggagtccagcaaacagcagagacacgacgatgac
acgtactccgagggcagcacggcagacatgaccaacaccgccgacctcctggagaagatc
gccgacctcggggaggatgtgaaggaccctgaggattgcttcaccgaaggatgcgtccgg
cgctgtccctgctgcacggtggacacgacacagttccccggcagggtctggtggaggctc
cggaaaacctgctaccgcatcgtggagcacagctggttcgagaccttcatcatcttcatg
attttgctgagcagcggagccctggcctttgaagacatctacctagaggagcgcaagacc
atcaaagtccttctggagtacgccgacaagatgttcacgtacatcttcgtgctggagatg
ctgctcaagtgggtggcctacggcttcaagaagtacttcaccaacgcttggtgctggctg
gacttcctcatcgtggacgtctccctgattagcctcgtggcaaatactctaggctttgcg
gaaatgggtcccatcaagtctctgcggacgctgcgtgctctgaggcccctgagagccctg
tcccgatttgaaggcatgagggttgtggtgaatgccctggtcggggccatcccctccatc
atgaacgtcctgctcgtctgcctcatcttctggctcatcttcagcatcatgggggtgaac
ctctttgcgggcaagtttgggaggtgcatcaaccaaacggagggcgacttgcccttgaac
cacacctttgtgaacaacaagagtgagtgtgagctgcacaacagcaccggggaactgtac
tggatcaaggtgaaagtcaactttgacaacgtgggagccgggtacttggccctgctgcaa
gtggccacatttaaaggctggacggacatcatgtacgccgctgtggactccagggggtgc
gaagaacagcctcagtgggaatacaacctgtacatgtacctctactttgtgattttcatc
atctttggatctttcttcaccctgaacctctttattggtgttatcattgacaacttcaac
caacaaaagaaaaagttaggaggacaagatatcttcatgaccgaggaacagaagaagtat
tacaatgcaatgaaaaagctgggttccaagaagccccaaaaaccaatcccacggcccttg
aacaagtaccaaggcttcctctttgacatcgtcaccaagcaggccttcgatgtcaccatc
atgttcctcatctgcctgaacatggtgaccatgatggtggagacggacgaccagagccca
gaaaagatcagcatcctggccaagatcaacctgctctttgtgggcatcttcacgggagag
tgtgtcatcaaggtcatcgccctgcgccattactactttaccaacagctggaacatcttc
gactttgtggtcgtgatcctttccatcgtgggaaccgtcctctcggacatcatccagaag
tacttcttttccccgacgctgttcagagtcatccgcctggcccgcatcggccgcatcctg
cggctgatccgaggggccaaggggatccgcacgctgctcttcgccctcatgatgtccctc
cccgccctcttcaacatcggcctgctgctcttcctggtcatgttcatctactccatcttc
ggcatggccaactttgcctacgtcaagtgggaggccggcatcgacgacatgttcaacttc
cagacgttcgccaacagcatgctctgcctcttccagatcaccacgtcggccggctgggac
gggctgctcagccccatcctcaacacggggcccccgtactgcgaccccaacctgcccaac
accaacaactcccgtgggaactgcgggagcccggccgtgggcatcctcttcttcgtcacc
tacatcatcatctccttcctcatcgtggtcaacatgtacatcgccatcatcctggagaac
ttcagcgtggccaccgaggagagcacggagccgctgagcgaggacgacttcgacatgttc
tacgagatctgggagaagttcgacccggaggccacgcagttcatcgagtactcggccctg
tcggacttcgccgacgccctctccgaccccctgcgcatcgccaagcccaaccagatcagc
ctcatcaacatggacctgcccatggtcagcggggaccgcatccactgcatggacatcctc
ttcgccttcaccaagcgggtcctgggcgagtcgggggagatggacgcgctgaagatccag
atggaggagaagttcatggccgccaacccgtccaagatctcctacgagcccatcaccacc
acgctgcggcgcaagcacgaggaggtgtcggccgtggtcatccagcgcgccttccgcagg
cacctgctgcagcgctccctcaagcacgcctccttcctctaccgccagcagaccagcgac
ggcacgctgtccggcgacgacgccccggagcacgagggcctcatcgcctacatgatgaac
gcgaacttttcccggcgctcagggcccccggactccgtgtcctccacgtccctgccgccg
tcctacgacagcgtcaccagggccacgagcgacaacatccaggcgcggatgtccgagtac
agccagaccgacgacttcgtggactaccccacgtccccggacagggaccgggagtccatc
gtgtga
DBGET
integrated database retrieval system
