Sarcophilus harrisii (Tasmanian devil): 100925158
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Entry
100925158 CDS
T02286
Name
(RefSeq) sodium channel protein type 5 subunit alpha isoform X1
KO
K04838
voltage-gated sodium channel type V alpha
Organism
shr
Sarcophilus harrisii (Tasmanian devil)
Pathway
shr04261
Adrenergic signaling in cardiomyocytes
shr04519
Cadherin signaling
Brite
KEGG Orthology (KO) [BR:
shr00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04519 Cadherin signaling
100925158
09150 Organismal Systems
09153 Circulatory system
04261 Adrenergic signaling in cardiomyocytes
100925158
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
shr04040
]
100925158
Ion channels [BR:
shr04040
]
Voltage-gated cation channels
Sodium channel, voltage-gated (Nav)
100925158
SSDB
Ortholog
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GFIT
Motif
Pfam:
Ion_trans
Na_trans_assoc
Na_trans_cytopl
IQ_SCN5A_C
PKD_channel
GPHH
IQ
CcmD_alt
Motif
Other DBs
NCBI-GeneID:
100925158
NCBI-ProteinID:
XP_031808347
LinkDB
All DBs
Position
1:13661561..13786499
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AA seq
1981 aa
AA seq
DB search
MANFLLPRGANSFRRFTRESLAAIEKQIAEKQARSVTQESRETPTEEEKPRPQLDLQASK
KLPDLYGNPPRDLIGEPLEDLDPFYSTQKTFIVLNKGKTIFRFSATNALYILSPFHPIRR
AAVKILVHSLFSMFIMCTILTNCVFMAQHEPPPWTKYVEYTFTAIYTFESLVKILARGFC
LNAFTFLRDPWNWLDFSVIVMAYTTEFVDLGNVSALRTFRVLRALKTISVISGLKTIVGA
LIQSVKKLADVMVLTVFCLSVFALIGLQLFMGNLRNKCVRDFVVLNGTNGTVVSEGQIWE
SVEEYISSPENYLLKNGTSDVLLCGNSSDAGTCPEGYRCLKAGENPDYGYTSFDSFGWAF
LALFRLMTQDCWERLYQQTLRSAGKIYMIFFMLVIFLGSFYLVNLILAVVAMAYEEQNQA
TIAETEEKEKRFQEAMEMLKKEHEALTARGMDTVSRSSFEMSPLAPKTAPDRRSRRRTRQ
SSGTDDCGEDRFPKSDSDDGPRRMTLLGINHRNSLKRRSSHGSVFTFRRRDLGSETDFAD
DEISTPGESESHRASLLVPWPARRPSAQSQSSPGVPTAPNLIHNGKRNSAVDCNGVVSLL
AMGVPEATSPGGGLLSPVILEKPRPPDTTSVSEEVSKKQLLIPQRLSLEYFEEPHERQRA
LSAVSVITSALEELEESHRKCPPCWNRFAQNYLIWECCPLWLAIKKNVKFVVMDPFTDLT
ITICIVLNTLFMALEHYNMTPDFEEMLQVGNLVFTGIFTAEMTFKIIALDPYYYFQQGWN
IFDSIIVILSLMELGLSRMGNLSVLRSFRLLRVFKLAKSWPTLNTLIKIIGNSVGALGNL
TLVLAIIVFIFAVVGMQLFGKNYSELRHRISDSGLLPRWHMMDFFHAFLIIFRILCGEWI
ETMWACMEVSGQSLCLLVFLLVMVIGNLVVLNLFLALLLSSFSADNLTAPDEDGEMNNLQ
LALARIQRGLRFVKRTTWDFCCSLLKRPRDMATRKKATGPPAVPPAPSGLPSCVAGHGST
ELEKVPETARKETRFDETKPGNPNSRGAGKEPGEFPGDPESSVHVPIAVAESDIEDHEED
EDNSLCTEMESSKQQRHDDDTYSEGSTADMTNTADLLEKIADLGEDVKDPEDCFTEGCVR
RCPCCTVDTTQFPGRVWWRLRKTCYRIVEHSWFETFIIFMILLSSGALAFEDIYLEERKT
IKVLLEYADKMFTYIFVLEMLLKWVAYGFKKYFTNAWCWLDFLIVDVSLISLVANTLGFA
EMGPIKSLRTLRALRPLRALSRFEGMRVVVNALVGAIPSIMNVLLVCLIFWLIFSIMGVN
LFAGKFGRCINQTEGDLPLNHTFVNNKSECELHNSTGELYWIKVKVNFDNVGAGYLALLQ
VATFKGWTDIMYAAVDSRGCEEQPQWEYNLYMYLYFVIFIIFGSFFTLNLFIGVIIDNFN
QQKKKLGGQDIFMTEEQKKYYNAMKKLGSKKPQKPIPRPLNKYQGFLFDIVTKQAFDVTI
MFLICLNMVTMMVETDDQSPEKISILAKINLLFVGIFTGECVIKVIALRHYYFTNSWNIF
DFVVVILSIVGTVLSDIIQKYFFSPTLFRVIRLARIGRILRLIRGAKGIRTLLFALMMSL
PALFNIGLLLFLVMFIYSIFGMANFAYVKWEAGIDDMFNFQTFANSMLCLFQITTSAGWD
GLLSPILNTGPPYCDPNLPNTNNSRGNCGSPAVGILFFVTYIIISFLIVVNMYIAIILEN
FSVATEESTEPLSEDDFDMFYEIWEKFDPEATQFIEYSALSDFADALSDPLRIAKPNQIS
LINMDLPMVSGDRIHCMDILFAFTKRVLGESGEMDALKIQMEEKFMAANPSKISYEPITT
TLRRKHEEVSAVVIQRAFRRHLLQRSLKHASFLYRQQTSDGTLSGDDAPEHEGLIAYMMN
ANFSRRSGPPDSVSSTSLPPSYDSVTRATSDNIQARMSEYSQTDDFVDYPTSPDRDRESI
V
NT seq
5946 nt
NT seq
+upstream
nt +downstream
nt
atggcaaacttcttgttacctcggggcgccaacagcttccgccggttcactcgcgaatct
ctggcagccattgagaagcagatcgcagagaagcaggcccggagcgtcacgcaggagagc
cgagagaccccgaccgaggaggagaagccgcggccccagctggacctgcaggcgtccaag
aagctgcccgacctctatggcaatccgcctcgggacctcatcggggagcccctggaggac
ttggaccctttctacagcacccaaaagaccttcatcgtactgaacaaagggaaaaccatc
ttccgatttagtgccacaaatgccttgtacatcctcagccccttccaccccatccggaga
gcagcagtaaaaattttggttcattctctgttcagtatgtttatcatgtgtaccatttta
accaactgtgtgttcatggcacaacatgagcccccgccgtggaccaagtatgttgagtac
acttttaccgccatttatacctttgagtcattggtaaaaatactagcgcgaggattttgt
ctaaacgcattcacctttctccgcgatccatggaactggctcgatttcagcgtgattgtc
atggcatacaccactgaatttgtggacctgggcaatgtctcagccttacgaaccttccgc
gttctccgggccctgaaaactatatcggtcatttcaggcctgaagaccatcgtgggggcc
ctgatccagtcagtaaagaagctcgctgacgtgatggtcctcactgtgttctgcctgagc
gtctttgctctcatagggctccagcttttcatgggcaatttgcggaacaaatgtgtgcgg
gactttgtggtcctgaatgggaccaatggcactgtggtgtccgaggggcaaatctgggag
tcggtagaggagtacatcagcagcccagaaaactatttgttgaagaacggaacctcagac
gtgttgctctgtgggaacagctcagatgctgggacatgtccagagggttaccgctgcctg
aaggctggagaaaaccccgactacggctacaccagctttgactcttttggctgggccttc
ctcgcgctcttccgcctgatgacccaagactgctgggagcgtctctaccagcagacgctg
agatctgccgggaagatctacatgatcttcttcatgctggtcatctttctgggctccttc
tacctggtgaacctgatcctagctgtggtggccatggcctacgaggagcagaatcaggcc
actattgctgagaccgaggagaaggagaagcgcttccaggaggccatggagatgcttaag
aaggagcatgaggctctgacagccaggggcatggacactgtgtccaggagttcctttgag
atgtctccccttgccccaaagacagcaccagacaggaggagtaggaggagaacgaggcaa
tcctcagggacagatgactgtggggaggacagatttcccaagtcggactcagatgatggc
cctcggagaatgacccttctgggaatcaaccacaggaattccctgaaacgccgatccagc
cacggcagcgtcttcaccttccgccgaagagacctgggctcggagaccgacttcgcggac
gatgagatcagcactcccggggagagcgagagccaccgggcatccctcctggtgccctgg
cccgcccggcggcccagtgcccagagccagtccagcccgggtgtccccactgcccccaat
ctcatccacaatggcaaaagaaacagcgcagtggactgcaacggtgtggtctccctcctg
gccatgggggtcccggaggccacgtccccggggggcggcttgctgtctcctgtgattctg
gagaagccccgacccccagacacgacctctgtgtcagaagaagtcagtaagaagcagctc
ctgataccccagcgcctgtccctggagtactttgaggagccgcacgagcggcagcgggcc
ttgagcgccgtcagtgtcatcaccagcgccctggaagagctggaggagtcccaccgaaag
tgccctccctgctggaatcgctttgctcagaactatctgatctgggagtgctgcccgctg
tggctggccatcaagaagaacgtcaagtttgtcgtgatggaccctttcaccgacctcacc
atcaccatctgcatcgtgctcaacaccctgttcatggcgctcgagcattacaacatgact
cccgatttcgaggaaatgctgcaggttggcaacctggtgttcactggcatcttcacggca
gaaatgaccttcaagatcattgccctggacccctactactacttccagcagggctggaac
atcttcgacagcatcattgtcatcctgagcctcatggagttgggcctgtcccgcatgggg
aatctgtcagtgctgcgctccttccggctgctgagggtcttcaaactggccaagtcctgg
cccaccctgaacacgctcatcaagatcatcggcaactcggtgggggcgctggggaacctg
actctggtgctggccatcattgtcttcatcttcgccgtggtgggcatgcagctgttcggg
aagaactactcggagctgaggcaccgcatcagcgactcgggcctgctgccccgctggcac
atgatggacttcttccacgccttcctcatcatcttccgcatcctgtgcggggagtggatc
gagaccatgtgggcctgcatggaggtgtccgggcagtccctgtgcctgctcgtcttcctg
ctcgtcatggtcatcggcaacctggtggtcctgaatctcttcctggccttgctgctcagc
tccttcagcgcagacaacctgacggccccagatgaggatggggagatgaataatctccag
ctggccctggcccggattcaaaggggccttcgctttgtcaagcgcaccacctgggacttc
tgctgcagcctgctcaaacggccccgtgacatggccaccaggaagaaagccacaggcccg
ccagccgtgcccccggcccccagtggcctgcccagctgcgtggctggccacggctccaca
gagctggagaaggtgcccgagactgcccgcaaggagacaaggtttgatgagacgaaacca
ggcaacccaaactccaggggtgcaggcaaggaaccaggagagttccccggggacccagag
tcatctgtgcacgtgcccattgctgtagccgagtcagatattgaggatcatgaggaggat
gaggataacagtctctgcaccgagatggagtccagcaaacagcagagacacgacgatgac
acgtactccgagggcagcacggcagacatgaccaacaccgccgacctcctggagaagatc
gccgacctcggggaggatgtgaaggaccctgaggattgcttcaccgaaggatgcgtccgg
cgctgtccctgctgcacggtggacacgacacagttccccggcagggtctggtggaggctc
cggaaaacctgctaccgcatcgtggagcacagctggttcgagaccttcatcatcttcatg
attttgctgagcagcggagccctggcctttgaagacatctacctagaggagcgcaagacc
atcaaagtccttctggagtacgccgacaagatgttcacgtacatcttcgtgctggagatg
ctgctcaagtgggtggcctacggcttcaagaagtacttcaccaacgcttggtgctggctg
gacttcctcatcgtggacgtctccctgattagcctcgtggcaaatactctaggctttgcg
gaaatgggtcccatcaagtctctgcggacgctgcgtgctctgaggcccctgagagccctg
tcccgatttgaaggcatgagggttgtggtgaatgccctggtcggggccatcccctccatc
atgaacgtcctgctcgtctgcctcatcttctggctcatcttcagcatcatgggggtgaac
ctctttgcgggcaagtttgggaggtgcatcaaccaaacggagggcgacttgcccttgaac
cacacctttgtgaacaacaagagtgagtgtgagctgcacaacagcaccggggaactgtac
tggatcaaggtgaaagtcaactttgacaacgtgggagccgggtacttggccctgctgcaa
gtggccacatttaaaggctggacggacatcatgtacgccgctgtggactccagggggtgc
gaagaacagcctcagtgggaatacaacctgtacatgtacctctactttgtgattttcatc
atctttggatctttcttcaccctgaacctctttattggtgttatcattgacaacttcaac
caacaaaagaaaaagttaggaggacaagatatcttcatgaccgaggaacagaagaagtat
tacaatgcaatgaaaaagctgggttccaagaagccccaaaaaccaatcccacggcccttg
aacaagtaccaaggcttcctctttgacatcgtcaccaagcaggccttcgatgtcaccatc
atgttcctcatctgcctgaacatggtgaccatgatggtggagacggacgaccagagccca
gaaaagatcagcatcctggccaagatcaacctgctctttgtgggcatcttcacgggagag
tgtgtcatcaaggtcatcgccctgcgccattactactttaccaacagctggaacatcttc
gactttgtggtcgtgatcctttccatcgtgggaaccgtcctctcggacatcatccagaag
tacttcttttccccgacgctgttcagagtcatccgcctggcccgcatcggccgcatcctg
cggctgatccgaggggccaaggggatccgcacgctgctcttcgccctcatgatgtccctc
cccgccctcttcaacatcggcctgctgctcttcctggtcatgttcatctactccatcttc
ggcatggccaactttgcctacgtcaagtgggaggccggcatcgacgacatgttcaacttc
cagacgttcgccaacagcatgctctgcctcttccagatcaccacgtcggccggctgggac
gggctgctcagccccatcctcaacacggggcccccgtactgcgaccccaacctgcccaac
accaacaactcccgtgggaactgcgggagcccggccgtgggcatcctcttcttcgtcacc
tacatcatcatctccttcctcatcgtggtcaacatgtacatcgccatcatcctggagaac
ttcagcgtggccaccgaggagagcacggagccgctgagcgaggacgacttcgacatgttc
tacgagatctgggagaagttcgacccggaggccacgcagttcatcgagtactcggccctg
tcggacttcgccgacgccctctccgaccccctgcgcatcgccaagcccaaccagatcagc
ctcatcaacatggacctgcccatggtcagcggggaccgcatccactgcatggacatcctc
ttcgccttcaccaagcgggtcctgggcgagtcgggggagatggacgcgctgaagatccag
atggaggagaagttcatggccgccaacccgtccaagatctcctacgagcccatcaccacc
acgctgcggcgcaagcacgaggaggtgtcggccgtggtcatccagcgcgccttccgcagg
cacctgctgcagcgctccctcaagcacgcctccttcctctaccgccagcagaccagcgac
ggcacgctgtccggcgacgacgccccggagcacgagggcctcatcgcctacatgatgaac
gcgaacttttcccggcgctcagggcccccggactccgtgtcctccacgtccctgccgccg
tcctacgacagcgtcaccagggccacgagcgacaacatccaggcgcggatgtccgagtac
agccagaccgacgacttcgtggactaccccacgtccccggacagggaccgggagtccatc
gtgtga
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