Sarcophilus harrisii (Tasmanian devil): 100925417
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Entry
100925417 CDS
T02286
Symbol
SCN10A
Name
(RefSeq) sodium channel protein type 10 subunit alpha isoform X1
KO
K04842
voltage-gated sodium channel type X alpha
Organism
shr
Sarcophilus harrisii (Tasmanian devil)
Brite
KEGG Orthology (KO) [BR:
shr00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
shr04040
]
100925417 (SCN10A)
Ion channels [BR:
shr04040
]
Voltage-gated cation channels
Sodium channel, voltage-gated (Nav)
100925417 (SCN10A)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ion_trans
Na_trans_assoc
Na_trans_cytopl
PKD_channel
IQ_SCN5A_C
Lustrin_cystein
GPHH
GP41
DUF2540
IQ
CcmD_alt
Motif
Other DBs
NCBI-GeneID:
100925417
NCBI-ProteinID:
XP_031808329
Ensembl:
ENSSHAG00000006436
LinkDB
All DBs
Position
1:13495714..13597306
Genome browser
AA seq
2005 aa
AA seq
DB search
MENPFGSLETNNFHPFTPESLAAIERRIEEEKLQNKLKKEHEGEGEKDSNAKEEKPRPQL
DLKACNQLPKFYGELPPELVGEPLEDLDPFYKNHKTFIVLNKGRTIFRFSATWALGLLSP
FHPIRRTAIKVSVHSLFSFFIMMTIMVNCVFMTKTETPPTVEYVFTGIYTFESLIKILAR
GFCLNEFTYLRDPWNWLDFCVISLAYIAEVTDLRGVSALRTFRVFRALKTVSVIPGLKVI
VGALIHSVKKLADVMVLTLFCLSVFALVALQLFKGNLRHKCTKNCTFFNTTSDSYGENKT
WDFCKNDSDYLMLKPGTKDHLLCGNGSEVGSCPKGYFCLKIGDNPDYNYTSFDNFGLAFL
ALFRLMTQDYWERLYQQVSHRTLRASGKIYMLFFVLVIFLGSFYLVNLILAVVTMAYEEQ
NEATMAEVEAKEKKFQEALEMLKKEQEVLAAMGIDTSSLLSFEMSPRASKNAKERRNKMN
QMKSEDSIEDTSYPHQRKMSFLSINYGPNGNSGKRRYSYGNFNLKNQDGLDSVFTDDEKT
TSKDNESRRGSLLLAHMGRRLSMQNQRIASSQSPMPTSRQDGKEQSNPGECNGKPSLLGG
DPISGNVTSSGEIEISGKVDMTSEEARKKNTLAAHTLSAEYCDEPFRVKRAVSVVSIITS
VLEELEESEQRCPPCWIRFARKYLIWECCETWLKFKDLISKIVMDPFTELIVTLCIVANT
LFMSMEHYNMTPSFSWMLQTGNIFFTVIFTAEMVLKIIAFHPYYYFQRSWNIFDSVIVTL
SLVELGLPQKASLSVLRSFRLLRVFKLAKSWPTLNNLIKIIGNSVGALGNLTLILAIIVF
IFAVVGKQLFGDNYERLRSEETGQLPRWHMHDFFHSFLIVFRILCGEWIETMWDCMEVNG
PYMCLVVFLMVMMLGNLVVLNLFIALLLNSFSADNLASEDDGELNNLQIALARIQKFAHL
VGQAIRDFWGRKFWTSKAKEEKQKQMVKMALSESRAPNHMTTQLLTSVGRVKDNPAPNGL
ALELAMCPVNDPGNFMINSNTEISVPIATAESDLEDDDDDDEPNVALEMAPPNQEVPPQE
GRRLQESNHHLTSDTSSEDLALYLDKQWKDIQSVGSPTEKGDVSSCSEGSTVDIPDPEII
LKKITDLSESLEEPADCFTEDCIRRCPCCTVDTERLPGSFFWNLRKTCYHIVEHNWFESF
IIFMILLSSGALAFEDVYLENRRTLKAILDFADMVFTYIFILEMLLKWVAYGFKTYFTNA
WCWLDFLIVDVSMISLIATTLGYSDIGPIKSLRTLRALRPLRALSRFEGMRVVVDALVGA
IPSIMNVLLVCLIFWLIFSIMGVNLFSGKFGRCVNLTVGDFSPVNVSIANDKTQCNNQSA
SGLFWDTVKVNFNNVGIGYLALLQVATFKGWMDIMYAAVDSRKQEEQPLWEANLYMYLYF
VIFIIFGGFFTLNLFVGVIIDNFNQQKKKLGGQDIFMTEEQKKYYNAMKKLGSKKPQKPI
PRPLNKYQGFVFDIVTRQAFDVAIMVLICLNMITMMVETDDQSKEKTRILNRINQFFVAV
FTTECVLKVFALRHYYFINGWNIFDLIVVVLSIASLVFSGIMKSLENYFSPTLFRVIRLA
RIGRILRLIRAAKGIRTLLFALMMSLPALFNIGLLLFLVMFIYSIFGMANFAYVKQEAGI
DDMFNFQTFANSMLCLFQITTSAGWDGLLSPILNRGQPYCDPDLINSNKSKGNCGNPTIG
IAFFVSYIIVSFLIVVNMYIAVILENFNVATEESTEPLSEDDFDMFYETWEKFDPEATQF
ITFSALSDFADALTEPLRIPKPNQNTLIQMDLPLVTGDKIHCLDILFAFTKRVLGESGDM
DTLKAQMEEKFMAANPSKESYEPIATTLRSKQENVSASIIQRAYRNYLIQQSFRQVVDAR
PNNSGERVCERATEDEGLIEFMMKENSGLPDKSETASTMSFPPSYDSVTRGLSEEGQLDT
SDTGLKEEDAGYEQPSQVVDKASSI
NT seq
6018 nt
NT seq
+upstream
nt +downstream
nt
atggaaaatccctttggctccctggagacaaacaacttccacccttttactcccgaatct
ttggctgctattgaaaggcggattgaggaggagaaacttcagaacaagttgaagaaggaa
catgagggagagggagagaaagactcaaatgccaaagaagagaagccccgaccccagctg
gacttaaaggcctgcaaccaactgcccaagttctatggagaacttcccccagaattggtg
ggggagcccctggaggacctggaccctttttacaaaaatcacaagacatttatagtgcta
aacaaagggcggacaatcttccggttcagtgcgacctgggctttggggttactcagtcct
ttccatcccatcaggagaactgccatcaaagtatcggtccattccctgttcagtttcttc
atcatgatgacaattatggtcaactgtgtgttcatgaccaagacggaaactccaccaact
gttgagtatgtcttcacagggatttacacatttgaatctttaataaaaatattggctcga
ggattttgtctgaatgaattcacctaccttcgagatccatggaattggctggatttttgt
gtgatttccctggcgtacattgctgaagttacagatctacgtggggtttcagctctaaga
actttcagagtattccgggctctgaaaacagtttcagtgatcccaggcttaaaggtgatt
gtgggtgccctgatccattctgtgaagaagctggcagatgtgatggtgctgacactcttc
tgcctgagcgtcttcgccctcgtagccttgcagctctttaaggggaatctcaggcacaaa
tgcactaagaactgtacattttttaacacgaccagtgattcctacggtgaaaacaagaca
tgggatttctgcaaaaatgactctgattacttgatgttaaagcctggcacaaaagatcac
ctactctgtggcaatggctctgaagtagggagctgtcccaaaggctatttctgtctaaag
ataggagacaatccagattataactacaccagttttgacaactttggcttggctttcctg
gctctgttccgcttgatgacacaggattactgggagcggctctaccagcaggtctctcat
aggaccttgagagcatctgggaaaatttacatgctttttttcgtgcttgttatttttctg
gggtccttctatctggtcaatttgatcctggcagttgtgaccatggcttatgaagagcag
aatgaagccacgatggctgaagtagaagcaaaggaaaagaagtttcaggaggcccttgag
atgttgaaaaaagagcaagaggtcctggctgccatggggattgacacaagctcgcttctt
tcctttgaaatgtcacctcgagcctccaaaaatgccaaagaaagaagaaacaagatgaat
caaatgaaatctgaggactccatagaagataccagctaccctcaccagaggaagatgtct
ttccttagcatcaattatggtcccaatggcaattcaggcaagagaaggtacagctatgga
aactttaatctcaagaatcaagatggtctggattctgtctttactgacgatgagaaaacc
accagtaaggacaatgagagtcgtcgagggtcgttgcttttggcacatatggggcgacgc
ttgagtatgcaaaaccaaaggatcgcttcatctcagtctcccatgcccacctccaggcaa
gacggcaaagagcaaagcaaccctggggaatgcaatgggaagccttctttgcttggtgga
gaccccatatctgggaatgtcacatcttcgggggagatcgaaatatctggaaaagtagat
atgacttctgaggaagccagaaagaagaacaccttggcagcccacaccttgtctgcagag
tattgcgatgaaccattccgagtgaaaagggcagtgagtgtagtcagtatcattacctct
gtccttgaggaacttgaagaatctgagcagaggtgccccccttgttggatccgctttgct
cggaagtatctgatttgggaatgctgtgagacctggctgaaattcaaggatctgatctca
aagatcgtgatggaccctttcacggagctcatcgtcaccctctgcattgtggccaacact
ctgttcatgtccatggagcactataatatgaccccatccttttcttggatgctccaaaca
ggcaatatattcttcacagtgattttcaccgctgagatggtgctcaagatcatcgccttc
catccctactattacttccaaaggagctggaatatctttgatagcgtcatcgtcaccttg
agcctggtggagctgggtctgccccaaaaagcgagcttgtcggtgctccgctccttcaga
ttgctgagggtcttcaagctggccaagtcttggccaactttgaacaatctcatcaagatc
atcggcaactccgtgggagccttgggcaacctcaccctgatcctggccatcatcgtcttc
atcttcgcagtggtcggaaaacagctgtttggagacaactacgagcggttgcgtagtgaa
gagacggggcagctgcctcgttggcacatgcacgatttcttccactctttcctcatcgtg
ttccggatcctctgtggagaatggatagagaccatgtgggactgtatggaagtgaacggg
ccctacatgtgtctcgtcgtcttcttgatggtgatgatgctggggaacctggtggtcctc
aacttgttcattgctttgctactgaattctttcagtgccgacaatttagcctctgaagat
gatggggagctgaacaatctccagatagccctggccagaatccagaagtttgcgcatctt
gtagggcaggccattcgggacttttggggcagaaagttctggacttcgaaggccaaagag
gagaaacagaaacagatggtgaaaatggccctttcagaatcaagggccccaaaccacatg
accacccaacttctcaccagtgttggacgggtcaaagacaacccagctcccaatgggctg
gccttggagttggccatgtgccctgttaatgaccctgggaacttcatgatcaatagcaac
acggagatctcagtccctatagctacagcagaatctgatcttgaagatgatgatgatgat
gatgagccaaatgtggcgttagaaatggctcctccaaatcaggaagtcccaccgcaagaa
ggacgaaggctacaggagagcaatcatcacctcacatctgacacttcttctgaagatctg
gccttatacctcgataagcaatggaaggatatccaatctgttggcagccccacagagaaa
ggtgatgtctcgagttgctctgaaggcagcactgtggacatccctgatccagagataatt
ctaaagaaaatcacagatctcagtgagagcttggaggaacctgcagattgcttcacagag
gactgcattcggcgctgtccatgctgtacagtggacacagaaaggcttcctggatctttc
ttctggaacctgagaaaaacctgctaccatattgtagaacacaactggtttgagagtttt
atcattttcatgattctgctgagcagtggagccttggctttcgaagatgtttatctggaa
aacaggcgcacattgaaagctatcctcgattttgctgacatggtgttcacttacatcttt
atcctcgagatgctactgaagtgggtggcctatggcttcaagacttacttcaccaatgcc
tggtgctggctggacttcctcatcgtggatgtttcaatgataagcctcatagcaactact
cttggctactctgacattggtcccattaaatccctgcggaccctccgggcgctgaggccc
ctgagagcactgtcacgctttgaaggcatgagggtggtcgtagatgccctggttggtgca
atcccctccatcatgaatgtccttctggtctgcctcatcttctggctcatcttcagcatc
atgggagtgaacctgttttcaggaaaatttggcagatgcgttaacctcaccgtgggagac
ttctcccctgtgaatgtgtccatcgccaatgacaagacccaatgtaataaccagagtgct
tcaggtctcttctgggacactgtgaaagtcaactttaataatgtgggaataggttacctt
gctcttctgcaggtggcaacattcaaagggtggatggatatcatgtatgctgctgtggat
tcccggaagcaagaggagcagcccctgtgggaggccaacctgtacatgtacctgtatttt
gtcatcttcatcatctttgggggtttcttcacactgaacctcttcgttggagttataatc
gacaatttcaatcaacaaaagaaaaagttaggtggtcaagatatattcatgactgaagaa
caaaagaaatattataatgccatgaaaaaactgggatccaaaaagcctcaaaaaccaatc
ccaagaccactgaataaataccaaggcttcgtgtttgatatcgtgacccggcaagccttc
gatgtggccatcatggttctcatctgccttaatatgatcaccatgatggtggagacagat
gaccagagtaaagagaaaaccagaatccttaaccggatcaaccagtttttcgttgccgtc
ttcacgacagagtgtgttctgaaggtgtttgctctgagacattactacttcatcaatggg
tggaacatatttgatttaattgttgtggtcctctcaatcgcaagtttggtgttttctggc
atcatgaagtcactggaaaattatttttccccgacactgttccgagtcatccgcctggcc
cgcatcggccgcatcctgcggctgatccgagcggccaaggggatccgcacgctgctcttc
gccctcatgatgtccctccccgccctcttcaacatcggcctgctgctcttcctggtcatg
ttcatctactccatcttcggcatggccaactttgcctatgtgaagcaggaggccggcatc
gacgacatgttcaacttccagacgttcgccaacagcatgctctgcctcttccagatcacc
acgtcggccggctgggacgggctgctcagccccatcctcaacagggggcagccatattgt
gacccagatctaataaactccaataaatccaaaggaaactgtggaaatcccacaatcggg
atcgccttctttgtcagttacatcatcgtctccttcctcatcgtggtcaacatgtacatc
gccgtcatcctggagaacttcaacgtggccacggaggagagcacggagccgctgagcgag
gacgacttcgacatgttctacgagacctgggaaaagtttgacccagaggccacgcagttc
attacgttctcagccctctcagattttgcagatgctctgacagaacctctgcgcattcca
aaacctaaccagaatacgctcatccagatggacctgcctttggtcacgggggacaagatc
cactgcttagacatcttgtttgcctttaccaagagagtgctgggagaatctggggatatg
gacacactgaaagcccaaatggaggaaaagttcatggcggctaatccttctaaagagtcc
tatgaaccaatcgcaacgactctgagatcaaaacaggaaaatgtgtccgcttccatcatt
caaagggcctacagaaattacctcatccagcagtccttccggcaggtcgtcgatgcacgt
cctaataattctggggaacgggtgtgtgagagggccactgaagatgaaggcttgattgaa
ttcatgatgaaggaaaacagcgggcttccggacaagtcagaaactgcatcaaccatgtcc
ttccccccatcttacgacagtgtcaccagaggcctcagtgaggaaggacagctggacaca
tctgataccggcctaaaggaggaagatgctggctatgagcaaccttcccaggttgtggac
aaagcctcatcgatatag
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integrated database retrieval system
