Sarcophilus harrisii (Tasmanian devil): 100925536
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Entry
100925536 CDS
T02286
Symbol
PRPF40B
Name
(RefSeq) pre-mRNA-processing factor 40 homolog B isoform X1
KO
K12821
pre-mRNA-processing factor 40
Organism
shr
Sarcophilus harrisii (Tasmanian devil)
Pathway
shr03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
shr00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
100925536 (PRPF40B)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
shr03041
]
100925536 (PRPF40B)
Spliceosome [BR:
shr03041
]
Complex A
U1 snRNP components
U1 related factors
100925536 (PRPF40B)
Complex B
100925536 (PRPF40B)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
FF
WW
WW_TCERG1
FF_RHG35_4th
DUF4936
DUF6887
Motif
Other DBs
NCBI-GeneID:
100925536
NCBI-ProteinID:
XP_031793802
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All DBs
Position
5:complement(93461330..93482487)
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AA seq
887 aa
AA seq
DB search
MSVPDSGPRPLATPAPFPPGPPMMPPPFMPPPGIPPPFPPMGLPPMNQRPPAIPPIPPGM
MPPMLPPMGGPPPITQIPGMVPPMMPGMLMPAVPVTAATAPGVDTASSVVAGADPMRVLW
SEHVAPDGRIYYYNADDKQSVWEKPSILKSKAELLLSQCPWKEYKSDTGKPYYYNNQSKE
SRWTRPKDLDELEALVKQEAAGKQQQQQQPQPQLQPEPPPATPGPAPASTGLIEPEPGGH
EDCELSESTQPLDQGLLHPEESTSSAARRQEEEEPKLEPERSSFSWSNREKAKQAFKELL
RDKAVPSNASWEQAMKMVVTDPRYSALPKLSEKKQAFNAYKAQREKEEKEEARLRAKEAK
QTLQHFLEQHDRMTSTTRYRRAEQTFGELEVWAVVPERDRKEIYDDVLFFLAKKEKEQAK
QLRRRNIQALKSILDGMSSVSYQTTWSQAQQHLMDNPSFAQDHQLQTCSLRADMDKEDAL
ICFEEHIRALEREEEEERERARLRERRQHRKNREAFQTFLDELHETGQLHSMSTWMELYP
AVSTDVRFANMLGQPGSTPLDLFKFYVEDLKARFHDEKKIIKDILKDRGFSVEVNTAFED
FAHVISFDKRAAALDAGNIKLTFNSLLEKAEAREREREKEEARRLRRREAAFRSMLRQAA
PALEPGTCWEEVRERFVCDSAFEQITLESERIRLFREFLQSECQHFHIKGKKHGKKGKKH
HRKRSHSPSGSESEEDEQPPLLRPTKRRKWNPSESGSEPSSSFDSAESGGGPLGGRGSPS
SRPPLGADHGFRKSKKPKKKGKKKRHKSNSPESEIEREKEKGSKEVEEKEQERDKEREAR
RPEPRNRSPGLGLKKEKTGWDTSESELSEGELERRRRTLLQQLDDQQ
NT seq
2664 nt
NT seq
+upstream
nt +downstream
nt
atgtcggttcctgattctggccccaggcccttggcaacacctgcccctttcccaccgggg
ccccccatgatgcctcctcccttcatgccccctccagggattcctccacctttcccccca
atggggctgcctcccatgaaccagagaccacctgccatccctcccatcccccctggcatg
atgcccccaatgctcccaccaatgggggggccaccaccaattacacagataccagggatg
gtaccacccatgatgccagggatgctgatgccggcggtgcctgtcactgcagcgacggcc
ccaggtgtggacaccgccagctctgttgtagctggagcagaccctatgagggttttgtgg
agtgaacatgtggctcctgatgggcgaatctactactacaatgcagatgacaagcagtct
gtatgggagaagcccagcatcctcaagtccaaagctgagttgctgttgtctcagtgcccc
tggaaagagtacaagtcagacactggcaaaccctactactacaacaaccagagtaaggag
tcccggtggacccggcctaaggacctggatgaactggaggctttggtcaaacaggaggct
gcagggaagcagcagcagcagcagcagccgcagccacagctgcagcccgagccacctcct
gctactcctggaccagccccagcctccacaggcctcattgaacctgaacctggtgggcat
gaagactgtgaactgtcagaatctacccagcctctagatcaggggcttttacatccagag
gagagcaccagcagtgcggccaggcggcaggaggaggaagagccaaagctcgagccagag
aggtcaagcttcagctggagcaaccgagaaaaggcaaagcaggcattcaaggaattgcta
agggacaaggctgtcccttccaatgcttcatgggaacaagccatgaagatggtggttact
gacccccgctacagtgctctgccaaaactaagtgagaaaaagcaggccttcaatgcttac
aaagcacagcgggagaaagaagaaaaggaagaggcccgtttgagggccaaagaggccaag
cagactcttcagcactttctggaacagcatgaccgtatgacctctaccacccgataccgg
agagcagagcaaacatttggggagctggaagtttgggctgtagtacctgaaagagaccgt
aaagaaatatatgatgatgtcctcttcttcctcgctaagaaggagaaggaacaggctaag
caactacgtcgccgcaatatccaggctctaaagagcatcctggatggaatgagcagtgtc
agctaccaaactacttggtcccaagctcaacagcacctcatggacaaccccagctttgcc
caggaccaccagctgcagacctgctccctgcgggcagacatggacaaggaggatgcgctg
atctgctttgaggagcacatccgagcactggagcgagaggaagaggaggaacgtgagagg
gcacgacttcgggagaggcgccagcatcgcaagaatcgagaagccttccagaccttcctg
gacgagctgcacgagacagggcagctgcactccatgtctacctggatggagctgtaccca
gcggtcagcaccgatgtccgctttgccaacatgctgggccagccgggctccacccctctg
gatctcttcaagttttatgtagaggatctgaaggccagattccatgatgagaagaagatc
attaaggacatcctgaaggatcggggtttcagtgtggaagtgaatacagcctttgaagac
tttgcacatgtcatcagctttgacaagagggctgctgcactggatgctggcaatatcaag
ctgaccttcaacagcttactagagaaggcagaggcacgagagcgggaaagggagaaagaa
gaagcacggaggcttcgacgtagggaggctgcctttcggagcatgttgaggcaagctgcc
cctgccttagagcctggcacttgctgggaagaggtccgagagcgctttgtgtgtgactct
gcctttgaacagatcacattggagtcagagcgaatacgcctcttccgagagtttttgcag
agtgagtgtcagcattttcacatcaaaggcaaaaaacatggcaaaaagggcaagaaacat
catcgaaagcgatcccattcaccctcgggctctgaatccgaggaagatgagcaaccaccc
cttcttcggcccaccaaacgaagaaaatggaatccttcagaatcgggctctgaaccttca
tcttcattcgattcagctgagagtgggggtggccctcttgggggcaggggctctccctcc
agccgcccccctcttggagcagatcatggctttcggaagtctaagaagccgaagaagaaa
ggcaagaagaagaggcacaagtcgaacagtcctgagagtgaaatagaacgagagaaagag
aaaggaagcaaggaagtggaagagaaagaacaagaacgggacaaagagagggaggcccgg
aggccagagccccgaaatcggtcccctggccttggacttaagaaagagaagacaggctgg
gacacatcagaaagtgagctgagtgaaggggaactcgaacggcgccgccggacacttctg
cagcagctggatgatcagcagtga
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