Sarcophilus harrisii (Tasmanian devil): 100925595
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Entry
100925595 CDS
T02286
Symbol
PRPF40A
Name
(RefSeq) pre-mRNA-processing factor 40 homolog A isoform X2
KO
K12821
pre-mRNA-processing factor 40
Organism
shr
Sarcophilus harrisii (Tasmanian devil)
Pathway
shr03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
shr00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
100925595 (PRPF40A)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
shr03041
]
100925595 (PRPF40A)
Spliceosome [BR:
shr03041
]
Complex A
U1 snRNP components
U1 related factors
100925595 (PRPF40A)
Complex B
100925595 (PRPF40A)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
FF
WW
WW_TCERG1
FF_RHG35_4th
WW_2
Motif
Other DBs
NCBI-GeneID:
100925595
NCBI-ProteinID:
XP_003763917
Ensembl:
ENSSHAG00000009029
LinkDB
All DBs
Position
3:424015394..424067610
Genome browser
AA seq
1037 aa
AA seq
DB search
MQATPSEAEAGGESPQSCVQAARSDWTAGKPVSLLAPLIPPRSSGQPLPFGPSGRQPLRS
LLVGMCSGSGRRRSSLSPTMRPGTGVERGGLMVSEMENRPPPRGPGNGERRLSSSSLCSS
PWASADGYLRRRPSMGHPGMHYPPMGMHPMGQRGNMQPVPHGMMQQMMPPMGGPPMGQMP
GMMSSVMPGMMMTHMSQASIQPALPPGVNNMDVAVGATSGTQKSMWTEHKSPDGRTYYYN
TETKQSTWEKPDDLKTPAEQLLSKCPWKEYKSDSGKPYYYNSQTKESRWAKPKELEDLEG
YQNTIVAGSLITKSNLHAMIKAEESSKEESTTTSTAPVPTTEITTTMSTMAAAEAAAAVV
AAAAAAAAAAAAANASANAAISTPSIVASSAPIVTEPEVTSIVATVIDNDNTVTISTEEQ
AQLVTPIVHEQSAEVSSNVPEEVSKQETSVDYTPKKEEEDSQPAKKTYTWNTKEEAKQAF
KELLKEKRVPSNASWEQAMKMIINDPRYSALAKLSEKKQAFNAYKVQTEKEEKEEARSKY
KEAKESFQRFLENHEKMTSTTRYKKAEQMFGEMEVWNAISERDRLEIYEDVLFFLSKKEK
EQAKQLRKRNWEALKNILDNMANVTYSTTWSEAQQYLMDNPTFAEDEELQNMDKEDALIC
FEEHIRALEKEEEEEKQKSLLRERRRQRKNRESFQIFLDELHEHGQLHSMSSWMELYPTI
SSDIRFTNMLGQPGSTALDLFKFYVEDLKARYHDEKKIIKDILKDKGFLVEVNTTFEDFV
AVISSTKRSTTLDAGNIKLAFNSLLEKAEAREREREKEEARKMKRKESAFKSMLKQAAPP
IELDAVWEDIRERFVKEPAFEDITLESERKRIFKDFMHVLEHECQHHHSKNKKHSKKSKK
HHRKRSRSRSGSDSDDDDSHSKKKRQRSESRSASERSSSAESERSYKKSKKHKKKSKKRR
HKSDSPESDTEREKDKKEKERENEKDRTRQRSESKHKSPKKKTGKDSGNWDTSGSELSEG
ELEKRRRTLLEQLDDDQ
NT seq
3114 nt
NT seq
+upstream
nt +downstream
nt
atgcaggcgacgccgagcgaggccgaggccgggggcgaatcgccgcagagctgcgtgcaa
gccgcgcgctctgattggacggcggggaagccagtcagcttattggccccgctgatcccg
ccccgcagctccgggcagcctctaccctttggccccagcgggcgccagccactcagatcg
ctccttgttggaatgtgtagcggcagcggccgccgccggagcagcctcagcccgacgatg
aggccggggacgggagtcgagcgtggaggcctcatggtgagtgaaatggagaaccgtcct
ccaccgcggggtcccgggaacggggagcggagactgtccagctcaagcctctgctccagc
ccatgggcctctgcggacggctacctgaggagacggccctcgatgggacatcctggtatg
cattatccacccatgggaatgcaccctatgggtcagagaggaaacatgcaacctgtacct
catggaatgatgcagcaaatgatgccccctatgggaggtcctccaatgggacaaatgcct
ggaatgatgtcttcagtcatgcctgggatgatgatgactcatatgtctcaggctagcatt
cagcctgctttaccgccaggagtaaacaatatggatgtagcagtaggtgcaacatctggc
acacaaaaatcaatgtggactgaacataaatctcctgatggaagaacttattattataac
acagaaacaaagcagtctacctgggaaaaacctgatgatctcaaaacacctgctgagcaa
ttattatctaaatgcccctggaaggagtacaaatctgactctggaaagccttattattat
aattctcaaacaaaggaatctcgttgggccaaacctaaggaactcgaggatcttgaagga
taccagaataccattgttgctggaagtcttattacaaaatcaaacctgcatgctatgatc
aaagcagaagaaagcagtaaagaagaatcaaccacaacatctactgccccagttcctaca
acagagattacaactacaatgagcactatggctgcagctgaagctgcagcagctgttgtt
gctgcagcagctgctgcagctgctgcagccgctgcagccaatgccagtgctaacgctgcc
atatcaactccttccattgttgcttcaagtgccccaattgtcactgagcctgaagttact
tccattgttgctactgtcatagataatgacaatacagtaacaatttcaactgaggaacaa
gcacaacttgttacacctattgttcatgaacaaagtgcagaagtatctagtaatgtacca
gaggaagtatcaaagcaagagacttcagttgattatactcccaaaaaggaggaagaagat
agtcagcctgctaaaaaaacatatacttggaatacaaaagaagaagcaaagcaagctttt
aaagagttactaaaagaaaagcgagtaccgtctaatgcttcatgggagcaagcaatgaag
atgattattaatgatccccgatacagtgccctggcaaagcttagtgaaaaaaagcaagcc
tttaatgcatataaagtgcagacagagaaagaagaaaaagaagaagcaagatcaaaatat
aaggaagctaaagaatccttccaacggtttcttgaaaaccatgaaaaaatgacttctaca
accagatataaaaaagctgaacaaatgtttggagagatggaagtatggaatgcaatatct
gagcgagatcgtcttgaaatttatgaagatgtcttattctttctttccaaaaaagaaaag
gaacaagcaaaacagttgcgaaagagaaattgggaggccttaaaaaatatacttgacaac
atggctaatgttacctactctactacttggtctgaagcccagcaatatttgatggataac
cctacttttgcagaagatgaggaacttcagaacatggataaagaagatgcattgatatgc
tttgaagaacatatccgggctttagaaaaagaagaggaagaagaaaagcaaaagagtttg
ttacgagaaaggaggcggcagcgtaaaaatagagaatcttttcagatatttttagatgag
ttgcatgaacacggacagttgcattctatgtcatcttggatggagttatatccaacaatt
agttctgatattagatttaccaacatgcttggtcagcctggatcaacagcacttgatctt
ttcaagttttatgttgaggatctaaaagcacgttatcatgatgaaaagaagataataaaa
gacatcctaaaggataaaggatttctggttgaagtaaatactacctttgaagattttgtt
gcagtaatcagttcaactaaaagatcaacaacattagatgctgggaacatcaaattggct
tttaatagtttgttagaaaaagcagaagcccgtgaacgggaaagagaaaaggaggaggct
cgtaagatgaaacgaaaagagtctgcattcaagagtatgttgaaacaggctgcccctcca
atagaattggatgcagtctgggaagatattcgagaaagatttgtaaaggaacccgcattt
gaagacattactctagagtctgaaagaaaaagaatatttaaggatttcatgcatgtgctt
gagcacgaatgtcaacatcatcattcaaagaacaagaaacattcaaaaaaatctaaaaaa
catcacaggaaacggtcacgttctcgatcgggctcagattcagatgatgatgatagccat
tcaaagaaaaagaggcaacggtcagaatcccgctctgcttcagaacgttcttctagtgcg
gagtctgagagaagttacaagaaatcaaaaaagcataagaagaaaagtaagaagagaaga
cacaaatctgattctccagagtctgatactgaacgagaaaaggataaaaaagaaaaagaa
cgagaaaatgaaaaggatagaactaggcagagatcagaatcaaaacacaaatcacctaaa
aagaagactggaaaagattctggtaattgggatacttctggcagtgaactgagtgaaggg
gaattagaaaagcggagaaggaccctcttggaacaactggatgatgatcaataa
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