Sarcophilus harrisii (Tasmanian devil): 100925654
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Entry
100925654 CDS
T02286
Symbol
NUP188
Name
(RefSeq) nucleoporin NUP188 homolog isoform X2
KO
K14311
nuclear pore complex protein Nup188
Organism
shr
Sarcophilus harrisii (Tasmanian devil)
Pathway
shr03013
Nucleocytoplasmic transport
shr05014
Amyotrophic lateral sclerosis
Brite
KEGG Orthology (KO) [BR:
shr00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
100925654 (NUP188)
09160 Human Diseases
09164 Neurodegenerative disease
05014 Amyotrophic lateral sclerosis
100925654 (NUP188)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
shr03019
]
100925654 (NUP188)
Messenger RNA biogenesis [BR:
shr03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
100925654 (NUP188)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Nup188_N-subdom_III
Nup188_N
Nup188_SH3-like
Motif
Other DBs
NCBI-GeneID:
100925654
NCBI-ProteinID:
XP_023350005
Ensembl:
ENSSHAG00000018897
UniProt:
A0A7N4V2F5
LinkDB
All DBs
Position
2:480145518..480188369
Genome browser
AA seq
1745 aa
AA seq
DB search
MAAAAGGLCVRSSRELWTILLGRSALRELNQIESELNKHWQRLLEGLSYYKPPSASSAEK
VKANKDVAPPLKELGLRISKFLGLDEEQSVQLLQCYLQEDYRGTRDSLKTVLQDERQSQA
LILKIADYYYEERTCILRCVLHLLTYFQDERHPYRVEYSECVDKLEKELVTKYRQQFEEL
YKTEAPTWETHGNLMTERQVSRWFVQCLREQSMLLEIIFLYYAYFEMVPGDLLLLTKMFK
AQGFGCRQTNRHLVDESMDPFVDRIGYFSALILVEGMDIDSLHKCALDDRTELHQFAQDG
LVCQNMDHLMLTLGDIPHHAPVLLAWALLRHTLNPEETSSVIRRMGSTAIQLNVFQYLTR
LLRSLASGGNNCTTSTACMCVYGLLSFVLTSLELHTLGNQQDVIDTACEVLADPSLPELF
WGTEPTSGLGIILDSVCGMFPHLLSPLLQLLRALVSGKSTAKKVYSFLDKMSFYNELYKH
RPHDVISHEDGTLWRRQTPKLLYPLGGQTNLRIPQGTVGQVMLDDRAYLVRWEYSYSSWT
LFTCEIEMLLHVVSTADVIQHCQRVKPIIDLVHKVISTDLSIADCLLPITSRIYMLLQRL
TTVISPPVDVIASCVNCLTVLAARNPAKVWTDLRHTGFLPFVAHPVSNMSQMISAEGMNA
GGYGNLLMNSEQPQGEYGVTIAFLRLITTLVKGQLGSTQSQGLAPCIMFVLKEMLPSYHK
WRYNAHGVREQIGCLILELIHAILNLCHESDIHNSHSPSLQSLCICSLANTEAGQAVINI
MGIGVDTIDMVMAAQPRCDGAEGQGQGQLLIKTVKLAFSVTNNVIRLKPPSNVVSPLEQA
LTQHGAHGNNLIAVLAKYIYHKHDPALPRLAIQLLKRLATVAPMSVYACLGSDAAAIRDA
FLTRLQSKIEDMRIKVMILEFLTVAVETQPGLIELFLNLEVKDGSDGSKEFSLGEWSCLQ
VVLELIDSKQQDRYWCPPLLHRAAIAFLHALWQDRRDSAMLVLRTKPKFWENLTSPLFGT
LSPPSETSEPSVLETCALIMKIICLEIYYVVKGSLDQSLKDTLKKFSSEKRFAYWSGYIK
SLADHMAETEGSGCTSLVEYQMLISAWRMLLIIATSHADIMHLNDTVVRRHLFLDVLAGT
KALLLVPTSVNCLRLGSMLCTLLLILLRQWTRDLGSVDEILSSLMEILEGILQADQQLME
KAKAKVFSALLTVLQMKELKVSDITQYSQLVLNVCETLQEEVIALFDQTRHSLASGSVSE
DKDSMETDDYSRLRHKDQRDGVCVLGLHLAKELCEVDEDGDSWLQVTRRIPILPTLFTTL
EVSLRMKQNLHFTEASLHLLFTLARTQQGAAAVAGAGITQSICLPLLSVYQLSTNGTVQT
SGASRKSLDAPSWPGVYRLSMSLMERLLKTLRYNFLTEALDFVGVHQERILQCLNAVRTV
QSLACLEEADHTVGFILQLSNFMKEWQFHLPQLLRDIQVNLCYLCQACTSLLHSRKMLQH
YLQNKNGSDAMPSAVTPRVQRPSQPVSSKQPNPDGEAAEQKALRMVQYSLLKILSKTLAA
LRHFTPDVCQILLDQSLDLAEYNILFALSFTTPTFDSDVAPSFGTLLATVNVALNMLGEL
DKKKEPLSQAVGLSTQVEGIRTLKSLLMFTMENCFYLLISQAVRYLRDPAVHPRDKQRMK
QELSSELSTLLSSLSRYFRRGAPTSPAAGVLPSPQGKPASTSKAGPESQEPLIQLVQAFV
QHVQR
NT seq
5238 nt
NT seq
+upstream
nt +downstream
nt
atggcggctgccgccggcgggctctgtgtgaggagcagtagagaactgtggaccattctg
cttggaagatcagctcttagagagctaaatcagatcgagtcagagttgaataaacactgg
cagcggctgctagagggactttcatactacaaacctcccagtgcaagttcagcagaaaaa
gtgaaagctaataaagatgtggctccaccactgaaggagctggggttgaggatcagcaaa
tttttgggccttgatgaagagcagagtgtgcagttacttcagtgttaccttcaagaggac
tatagagggaccagggactcactaaagacagtactgcaagatgagagacagagccaggct
ctaatactaaagattgcagattattactatgaagagaggacctgtattctacgttgcgtt
ttacatttactcacttatttccaggatgagaggcatccctacagggttgagtactccgaa
tgtgttgataaattggagaaggagctagtcactaagtaccggcaacagtttgaggagctc
tacaaaacagaagcgccaacatgggaaacacatggaaatctcatgactgagcgtcaagtg
tcccgatggtttgttcagtgcctgcgggagcagtcaatgctgctggaaataattttcctt
tattatgcctactttgaaatggttcctggtgacctgctgctattaactaagatgttcaaa
gcacaagggtttggatgtaggcagaccaatagacatttggtagatgaaagcatggatcct
tttgtggatcggattggctatttcagtgcccttatcctggtggagggaatggatattgac
tcattacataaatgtgctttggatgataggacagagctccatcagtttgcccaggatggg
cttgtatgtcagaatatggatcacctgatgttgaccttaggggacatccctcatcatgcc
cctgtgcttttggcttgggctttactccgccacaccttaaacccagaagaaacaagtagt
gtcatcaggaggatgggcagcacagccatccagctcaatgtattccagtacctgacacga
ctgcttcgatcactagccagtggaggaaataattgtacaaccagtactgcttgcatgtgc
gtctatggactgctttcttttgttctcacctcactggagttacacactttaggcaatcag
caagatgtcattgatacagcatgtgaagttctagcagacccttctcttccagaactcttt
tggggaacggaaccaacttctggactagggatcatcctggacagtgtgtgtggaatgttc
ccccatctcctgtctcctcttttgcaattgctcagagctcttgtgtcagggaaatctaca
gccaaaaaggtatatagtttcctggataaaatgtctttctacaatgagctttataaacat
aggcctcatgatgtgatctcacatgaagatgggaccctctggcggaggcagacaccaaaa
ctcctttaccctctcgggggtcagactaatcttcgtatacctcagggcacagtgggtcag
gtaatgctggatgaccgtgcttacctagtgcgctgggaatactcctacagcagctggact
ctgttcacttgtgagattgaaatgctactgcatgttgtatcaacagcagatgtaattcag
cattgccagcgggtcaaacctatcattgacctggttcacaaagtcatcagcactgatttg
tccatagctgattgtcttctgccaatcacatcacgaatctacatgttactgcagaggtta
acaactgtaatctctcctcctgtggatgtcattgcttcctgtgtcaattgcttaacggta
ttagctgcccggaatccagctaaagtctggactgatcttcgccacacaggttttctgcca
tttgtagcccatccagtatccaatatgagtcagatgattagtgctgaggggatgaatgca
gggggctatggaaacctcttgatgaatagtgagcagccacagggtgaatatggagttacc
attgcctttttgcgcttaatcaccactcttgtcaaggggcagcttggtagcacccagagc
caagggctggccccttgcatcatgtttgtgttgaaggagatgcttcccagctatcataag
tggcgttacaatgcccatggagtgagagagcaaattggctgtctgatccttgagctgatc
catgcaattctgaatctgtgccatgagtctgacattcacaacagccattcccctagttta
cagtctctgtgcatctgcagcctggccaacaccgaagctggccaagcagtcattaacatc
atgggcattggtgtagataccattgacatggtgatggcagctcagcccagatgtgatggg
gcagagggccaggggcaaggccagctacttatcaagactgtgaaactggcgttttcagtg
accaacaatgtcattaggctgaaacctccttctaatgtggtatctcccctggaacaggca
ctcactcaacatggtgcccatgggaacaaccttattgctgttttggccaaatacatctat
cacaaacatgaccctgctttgccacgacttgctatccagctactgaaacgcttggcaacg
gttgccccgatgtctgtgtatgcttgccttggcagcgatgcagctgctatccgggatgcc
tttctgaccaggctgcaaagcaaaattgaggatatgcgtatcaaagtcatgatcttagag
tttcttactgttgctgtggagacccaacctggcctcattgagctctttctgaaccttgaa
gtaaaggatgggagtgatggctccaaggaattcagtcttggggaatggagctgtctccag
gtagtacttgagttaattgattcaaaacagcaagatagatattggtgtccacccctgcta
caccgtgctgcgatagcttttctacatgctctgtggcaggaccgccgggacagtgccatg
ctggttctcaggaccaaaccaaagttttgggagaatttgaccagcccgttatttgggact
ctttctcctccctcagaaacatccgagcccagtgtcctggagacctgtgccttaattatg
aagatcatttgtttggaaatatattatgtagttaagggttcactggaccagtccctaaaa
gacacactcaagaaattctccagtgagaaacgttttgcctattggtcaggttatatcaaa
tctttggcagatcacatggcagagacagaaggaagtggctgcacctctttggtggagtac
cagatgttgatctctgcctggcggatgcttctcattattgccaccagccatgcagatata
atgcatttgaatgatactgttgttcgacgtcacttatttcttgatgttcttgctgggact
aaagctttattgttggtcccaacatcagtgaactgcctgaggctgggatccatgctatgt
actctgctgcttatcttgcttcgacagtggacaagagatttgggttctgtggatgaaatc
cttagctccttgatggagattctagagggaatcctacaggcagaccagcagctgatggaa
aaggctaaggccaaagtgttctcagccctccttactgtcctccagatgaaagaattgaaa
gtgagtgatatcacacaatactcccagttggtgctaaatgtctgtgagacccttcaggaa
gaagtgattgccctctttgaccagacccgtcacagcctggcctctggcagtgtgtcagag
gacaaggacagcatggagacagatgactactcacggcttcggcacaaggaccagcgggat
ggggtatgtgttctgggcctacacttggccaaagaattatgtgaagtggatgaggatgga
gactcttggcttcaggttacccgtaggatccctattctgcctactctgttcaccaccctg
gaggtgagcctgagaatgaagcaaaacctgcactttactgaagcctcgctgcaccttctg
tttaccttggcccgaacccagcagggtgcagcagctgtggctggagctggcattacccag
agcatctgcttgccccttttaagtgtgtaccaactcagcaccaatggaacagtacagact
tctggtgcctctcgaaagtcccttgatgccccttcttggcctggagtctaccgcctgtcc
atgtccttgatggaacgtctgctgaaaaccctacgttataatttcctgactgaagccctg
gactttgtgggtgttcatcaagagcgaattctgcagtgcctcaatgcagtaaggacagtg
cagagtctggcctgtctcgaggaagctgatcacactgtaggctttatcctgcagctctcc
aacttcatgaaggagtggcagtttcatctgccacagctcctgagagacatacaggtaaac
ctgtgttacctatgtcaggcttgtacctcccttctgcacagccgcaagatgctgcagcac
tatttacagaacaaaaatggaagcgacgccatgccctcagctgtgactcctcgagtccaa
cgcccctcccagcccgtgtcctcgaagcagcctaatcccgatggtgaggctgctgaacaa
aaggctctgcgcatggtccagtatagcctcctgaagattctcagcaagacgctggctgcc
ctgcgtcacttcacccctgatgtctgccagatccttttggaccagtccctagatcttgct
gaatacaacatcctttttgccctgagcttcacaaccccaaccttcgactctgatgtggct
ccctcttttgggactctcctagcaacagtgaatgtggccctcaacatgttgggagagttg
gacaagaaaaaggaacccctgtcccaggctgtggggctgagcacacaggtggaggggatc
agaacactgaagtccctcctgatgtttacgatggaaaattgcttctacttgctcatctcc
caggctgtacgctacctgagggacccagctgtacaccccagggacaaacaacgaatgaag
caggagctcagctcagaattgagtacattgctctccagcctttcccgttacttccgccgt
ggagcccccacttccccagctgctggagtccttccttcacctcaaggcaagccagcctca
acttccaaagcaggccctgaaagccaggaacctctgattcagctagtccaggcctttgtc
cagcacgtacagagatag
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integrated database retrieval system
