Sarcophilus harrisii (Tasmanian devil): 100925678
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Entry
100925678 CDS
T02286
Symbol
SCN11A
Name
(RefSeq) sodium channel protein type 11 subunit alpha isoform X1
KO
K04843
voltage-gated sodium channel type XI alpha
Organism
shr
Sarcophilus harrisii (Tasmanian devil)
Brite
KEGG Orthology (KO) [BR:
shr00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
shr04040
]
100925678 (SCN11A)
Ion channels [BR:
shr04040
]
Voltage-gated cation channels
Sodium channel, voltage-gated (Nav)
100925678 (SCN11A)
BRITE hierarchy
SSDB
Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Ion_trans
Na_trans_assoc
IQ_SCN5A_C
PKD_channel
GPHH
Motif
Other DBs
NCBI-GeneID:
100925678
NCBI-ProteinID:
XP_031808311
UniProt:
G3W1W7
LinkDB
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Position
1:13330341..13437299
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AA seq
1827 aa
AA seq
DB search
MKIEEKMACPVIFPDARNFHHFTPDSLLMIEKLIAAEKLKKKAQEPSALETPPQPQLDLK
VSRKLPKIYGDIPPEVVGKPLEDLDPFYVNHKTFMVLNKKRTIYRFSAKPALFILGPFNA
VRRLAIYVSVHSLFSMFIICTVIVNCAFMAFLKDETTNKHAEYVFTAIYSFEALIKILAR
GLLLDEFSYLRDPWNWLDFFVITVAFLSLGIKQLESVSALRTFRVLRALKAISVISGLKV
IVGALLRSVKKLVDVMILMVFSLSIFALVAQQLFMGSLRNRCIHRSCLNDGYDTKKPESC
SFLREDIPFLENCSENKSGSSSEKKLCGTWRNTSCCSDFVCCKTKLNPDYSFTNFDHFGW
AFLSMFRVMTQDSWERLYQQTLRVSGQFAVFFFMIVIFLGSFYLINLTLAVVTMSYEEQN
KNVAAETEAKEKMFREALQLLKQEQETLVAMGIDRSSLNSLETSSVSCQKRSFFGNKRRK
SFLVGNSGEDQAPFSDPDESVQRKQQLLNQTKRLSQNLSMDYWDGHNDTFQRQRALSAVS
IVTITMQEYEKSQQKCLPCQNNFFSKYCIWECCPLWLRIKKIVELVIMDPFADLAITICI
IVNTVFMAMEHYEENNDFERMLNAGNYVFTGIFVAEMFFKIIALDPYYYFLRPWNIFDTI
IAVLSLVEIIISLVVKSNMSILRSLRLLRVFKLAKSWPTLNTLIKIIGHSVGALGNLTLV
LTIIVFIFSVVGMQLFGNPENKTLSCLNFTRPEPQRWHMRDFFHSFLVVFRILCGEWIEN
MWECMCDFPQVLCILVYLLILVIGNLVVLNLFIALLLNSFSSEEREGNGCGEVRKTKLQL
AFDRFHRAFHFVKHAIWHFCSSPFRKQMFRKPKDVSKKQKVQNEDAIPLESGIKREQANH
EQLCPKDKKSSLEYTGLDFIYQNSNTRHLSFNKAPLAEEEEDDDDDIHSLVEDEFQDIGE
TEFFKQVEKQCMSPGAMSREVDVFSEDGTEKKENFEVTSFLSDCSTIDLKDLILFIPEMI
SQKGPERCWPKGCYKLFPCFALNVKKSPGIIWLKLRVTCYRIIKHNWFESFIIFMILLSS
GALIFEDCSLPSKKNIKELLSFADKVFTYIFILEMFLKWVAYGFKKYFMNAWCFLDFVIV
NVSLISLIAESAKSHLSINVKSLRTLRALRPLRALSQFEGMRVVVNALMGAIPAIFNVLL
VCLIFWLIFCMLGVNLFAGKFGKCVNIKTEEIINASEIHNITLCKSGNYNDVCWINSKVN
FDNVGIGYLALLQVATFKGWMDIMYTAVDSPGRGKQPVFETNIYAYLYFVGFIIFGSFFT
LNLFIGVIIDNFNQQQKKLGGQDIFMTEEQKKYYNAMKKLGSKKPQKPIPRPLNKCQAFV
FDVVTNQAFDIFIITLICLNMVTMMAETDSPEGPNLQKAQFLETLNSFFVVIFTVECLLK
IFALRQFYFANGWNLFDCVVVVLSVISLLISQLEKHKTIPFPPVLFRVIRLARIGRILRL
VRAAKGIRTLLFALMMSLPSLFNIGLLLFLVMFIYAIIGMTNFSHVKYEAGIDDIFNFQD
FGSSMLCLFQITTSAGWDALLSPMLTSGNSSCKPQNSRYNKSSCSSESSYCSKSDSKPNS
ESVTSVMAIAFFVSYIIISFLIVVNMYIAVILENFNTATEESEDPLSEDDFDIFYEIWEK
FDPEATQFIEYSALSDFADSLPDPLRVAKPNRNQLLMMDLPMVSGNRLHCMDILFAFTTR
VLGDSEGMDCLKSQMEEKFMEANPNKKLYEPIVTTTKRMEEERCAAVIQKAYRHYLLKTS
AKKKPQQMVCNGAVATLEVPDGKVHFD
NT seq
5484 nt
NT seq
+upstream
nt +downstream
nt
atgaaaatagaagaaaagatggcctgccctgtgatcttcccagatgctcgcaacttccat
catttcactccggattccctgcttatgatcgagaaacttattgccgcagagaaactgaag
aagaaagcccaagagccatcagctttagaaacccctcctcagcctcagcttgacctaaaa
gtatccaggaagttgcccaagatttatggggacattcctccagaggttgtggggaagcct
ctggaagaccttgaccctttctatgtgaaccacaagacattcatggtgttgaacaaaaag
aggacaatctaccgcttcagtgccaaacccgccttattcattcttgggccttttaatgcc
gtcaggagactggccatttacgtctcagttcattcattattcagcatgttcatcatatgc
acggttattgtcaattgtgccttcatggcattcctaaaagatgagacaacgaataaacac
gctgaatatgtttttactgccatctacagttttgaagcattgattaaaatattggcaaga
ggacttcttctggatgagttcagttatcttcgagatccatggaactggttggatttcttt
gtcatcacagtggcatttctatcactagggataaaacaactagaaagcgtgtcagctctg
agaacatttcgagtgctcagagctttgaaagccatctcagtcatttcaggtttgaaggtc
attgttggggccctactgcgctcagtgaagaaattggtggatgtgatgattctgatggtc
ttttctttgagcatttttgccctggtggctcagcagctattcatggggagtctcaggaat
agatgcatccacaggtcctgtttgaatgatggttatgacactaaaaaacctgaaagttgt
tcatttctcagagaggatattccatttctagaaaactgcagtgaaaataaaagtggaagc
tcttctgaaaaaaaattatgtggcacctggaggaatacctcatgttgctctgattttgta
tgctgtaaaacgaagctcaatcctgattatagttttacaaactttgaccattttggttgg
gcctttctcagcatgttccgtgtgatgactcaggattcctgggaacgcctgtatcagcag
acccttcgagtttctggacagtttgctgtattcttttttatgatcgtcatcttccttggc
tctttttacctgattaacctgaccttggctgtcgtcacaatgtcatatgaagagcaaaat
aaaaatgtggcagctgagacggaagcaaaagaaaaaatgttcagagaagctctgcagctg
ctaaagcaggagcaggagactttagttgctatgggaattgataggagttcacttaattcc
cttgaaacatcatctgtttcttgccaaaagagaagcttcttcggtaacaagagaaggaaa
tccttccttgtaggaaattctggagaagatcaagctccattctctgatcctgatgaaagt
gtccaaagaaagcagcagttattgaaccaaaccaagcgcctgtcacagaacctgtctatg
gattattgggacggccacaacgacacctttcagagacaacgagccctgagtgccgtcagc
atcgtcaccatcactatgcaggagtatgaaaagtcacagcagaaatgccttccctgccag
aataactttttctccaagtattgcatttgggagtgttgtcccctgtggcttcgcattaaa
aagatcgtggaacttgtcatcatggatcccttcgctgacctggccatcacaatctgcatc
attgtcaacactgtattcatggcaatggagcactatgaagagaataacgactttgagaga
atgctcaatgcaggaaactatgtatttactggaatttttgtagcagaaatgttcttcaaa
atcattgccctggatccatattattattttcttcgaccctggaacatttttgacactatc
atcgcagttctgagtcttgtggaaataatcatttcacttgttgttaaatcaaatatgtca
atattacgttctttaagactgctgagagttttcaagttagccaaatcctggccaacactg
aatactcttattaagattattggccactcagtcggcgccctgggtaacctcactctggtc
ttgaccatcatcgtcttcatcttctcagttgttggcatgcagctttttgggaatcctgaa
aataaaactctttcatgtcttaacttcacgcggcccgagccacagcgctggcacatgaga
gacttcttccactcttttctggttgtgttccgcattctgtgtggcgaatggatcgaaaac
atgtgggagtgtatgtgtgacttccctcaggtgctgtgcattctcgtctacttgctgatt
ttggtgataggaaacttggtggtactcaatcttttcattgccctgctgctcaactccttc
agcagtgaggaaagagaagggaatggatgtggagaggtgaggaagaccaagctgcagctt
gcttttgatcggttccatcgggcttttcattttgtgaaacacgccatttggcatttttgt
agcagtcctttcaggaagcaaatgtttagaaagccaaaggatgtgtccaaaaaacagaag
gttcagaatgaagatgctattccactggagtcaggaataaaacgagagcaagcaaaccat
gaacaactttgccctaaggacaagaagagttctcttgaatacacaggcctggactttata
taccagaattcaaataccaggcacctgtcatttaataaagccccacttgctgaagaagaa
gaagatgatgatgatgatattcactctctagttgaagatgagttccaggatatcggggaa
acagagtttttcaaacaggtggaaaagcagtgtatgagcccgggagccatgagcagagaa
gtcgatgtgttttctgaagatggcactgaaaagaaagagaattttgaagtcaccagcttt
ctatctgattgcagcaccattgatctgaaggatctcattttgttcattcctgaaatgatt
tctcaaaaaggacctgagagatgttggcccaaaggttgctacaaattatttccctgcttt
gcattgaatgtaaaaaagtctcctggaatcatttggctgaagctgagggtaacctgctac
agaatcatcaagcacaactggtttgagagtttcattatcttcatgattcttctgagtagt
ggagctctgatatttgaagattgttcccttccatcaaagaaaaacattaaggaattgctg
agctttgctgataaggtttttacctacattttcatcctggagatgtttttaaaatgggtg
gcctatggatttaagaagtatttcatgaatgcatggtgttttcttgacttcgttattgta
aatgtctctctgataagccttattgctgagagtgcaaaatcacacttgtctattaatgtt
aaatcccttcggacactgagagccttgaggccattgcgggcactgtcccagtttgaaggg
atgagggttgttgtcaatgctcttatgggggccattcctgccatctttaacgtcctgctg
gtctgtctcattttctggctcatcttctgtatgctaggggtaaatctttttgctgggaaa
tttggaaaatgcgtcaacatcaagacagaagaaattatcaacgcctctgagattcacaac
ataacattgtgcaaaagtggaaactacaatgacgtatgctggattaacagtaaagtcaac
tttgataatgtcggaattggttacttggctcttctccaggtggccacatttaaaggttgg
atggatattatgtatacagctgtcgattcaccagggagagggaagcagccagtctttgag
acaaatatatatgcgtatctctactttgtcggttttatcatttttggctcattcttcact
ttgaatcttttcattggtgttatcatcgacaactttaaccaacagcaaaaaaagttaggt
ggccaagatatcttcatgacagaggagcagaaaaaatattacaatgcaatgaaaaaactg
ggatcaaagaagccccaaaaacctattccaaggcctttgaataaatgccaagcttttgta
tttgatgtagtcacgaaccaagcttttgatattttcatcataactctcatttgccttaat
atggtcaccatgatggcagaaacggactctcccgaaggacccaatctgcaaaaggcacaa
tttctggaaaccctcaactccttctttgttgttatcttcacagtcgagtgtctcttgaaa
atctttgctctgagacaattctacttcgctaatggttggaacttatttgattgtgtggtc
gtggtcctctctgttattagccttttgatttctcaactggaaaagcataagacaattcca
ttccctccagtgctcttcagagttatccgcttggctcggattggccgaatactcagactc
gttcgagcagctaaaggaatcaggactcttctttttgcactgatgatgtcacttccttcc
ctattcaacattgggcttctgctctttctggtcatgtttatctatgccattattggtatg
acgaatttttcccacgtgaaatatgaggcagggattgacgatatattcaacttccaagac
ttcggcagcagcatgctctgcctcttccagatcactacgtcagcaggctgggatgccctt
ttaagtcctatgttgacttcaggaaattcctcttgcaagccacagaattctcgttataat
aaaagttcttgtagttcagaaagttcatattgttccaaaagtgacagtaaaccaaatagt
gagtctgtgacctctgtcatggcaattgccttctttgtcagttatatcattatctccttc
cttattgttgtgaacatgtacattgctgtgattttagaaaatttcaacacagccactgaa
gaaagtgaggatcccttaagtgaggatgattttgacatattctatgaaatttgggaaaaa
tttgatcccgaagcaacacaattcatcgaatactcggctctctcagactttgccgattcc
ttgccagatcccttacgtgtggccaaaccaaatagaaatcagcttctaatgatggatctg
cccatggtcagtggcaatcggctccactgcatggatatactgtttgctttcaccacgaga
gtgctgggtgactccgaggggatggattgccttaaaagccagatggaagagaaattcatg
gaggctaatcctaacaagaagttatatgaaccgattgtgaccaccacaaagcgcatggaa
gaagaacggtgtgcagctgtcatccagaaggcctatcgacactacttgctgaagaccagt
gccaagaaaaaaccacagcagatggtttgcaatggagccgttgctaccttggaagtacct
gatggcaaagtccactttgactga
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