Sarcophilus harrisii (Tasmanian devil): 100925885
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Entry
100925885 CDS
T02286
Symbol
PNLDC1
Name
(RefSeq) poly(A)-specific ribonuclease PNLDC1 isoform X1
KO
K01148
poly(A)-specific ribonuclease [EC:
3.1.13.4
]
Organism
shr
Sarcophilus harrisii (Tasmanian devil)
Pathway
shr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
shr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
100925885 (PNLDC1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
shr03019
]
100925885 (PNLDC1)
Enzymes [BR:
shr01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
100925885 (PNLDC1)
Messenger RNA biogenesis [BR:
shr03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
100925885 (PNLDC1)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CAF1
Motif
Other DBs
NCBI-GeneID:
100925885
NCBI-ProteinID:
XP_031793395
Ensembl:
ENSSHAG00000015192
UniProt:
G3WR41
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All DBs
Position
4:complement(131377331..131397631)
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AA seq
582 aa
AA seq
DB search
MELGADGFEQKLPLLEELILGSDFLGLDIEFTGLRSIFPKGQQTSLFDSPAEWYLKTKQS
IQQFTVCQIGLSMFSSMGRKSNKYIAHSYNFFLFPTTLGIMDSEFSFQASSILFLNQYGF
DYNKFLKNGIPYMNEEQEKKIKQDLLTGNWKVRSTLDKDQMKVVIDEVTRWLEMAQEGDW
MTLPDITGFQAFEVQLVLRQALPTVWTLMKDRGVLVKKVSRQYRWCLENSSRDHDDCRRE
KILLSARGFAVFFQMLVKAKKPLVGHNMMMDLLHLHEKFYRPLPESYEQFKLNIHSLFPV
LIDTKNVTKEIWKELSFPRASNLLEVYEVLNSDLNPTKNSCPVIIHASECIKYVETKYPH
EAAYDAFLCGSVLLKVAHLLLYRSTGTSLLGQKLSLSPFLTRLLPRISLPIFFPPAYRPL
CWLPLLRLIQSKADSGGIKLEPTFPQYLDVLGPYVNQVNLIRACISKINFSGPDSPSSRP
PTLILKVKRWPGVDEEQIYYEFKDLCKFDVRRFTRNQFLLMTNKFKDVRIVLQEYRYHPD
LQVTLYRYWRHSPNINCILQISGIVTAWAFLAFILGGSPSNV
NT seq
1749 nt
NT seq
+upstream
nt +downstream
nt
atggagctgggcgccgacggctttgagcagaagctgcccttgctggaggagctcatcttg
ggctcggacttcttgggtttggacatagaattcacaggcttgaggtccatctttccaaaa
ggccagcaaacaagtctctttgactcaccagcagagtggtatctaaagaccaagcagagc
attcagcagtttacagtgtgtcagattggattgtcaatgttttcaagtatgggaagaaag
tcaaacaagtatatagcccattcatataacttctttctcttccccaccacacttgggatt
atggattcagagttctccttccaggcctctagtattctatttttgaatcagtatggtttc
gattataataagtttctcaaaaatgggatcccatatatgaatgaagaacaggagaaaaag
attaagcaagatcttctaacagggaattggaaagttcgtagtacattggacaaagaccaa
atgaaggtggtgattgatgaggtaactcggtggttggagatggcacaagaaggcgattgg
atgactcttcctgatataactgggttccaggcttttgaggtacagttggtactgaggcag
gctctccccacagtttggacccttatgaaagacagaggggtgctagtaaagaaagtgagc
cgtcaataccgctggtgtctggagaactcctctcgtgaccatgatgactgcaggagggag
aagatcctcctctctgcccggggttttgctgtctttttccagatgctggtaaaagccaaa
aagcctttggtgggacataatatgatgatggatcttctgcatcttcatgaaaagttctac
agacctctcccagaatcctacgagcagtttaagttgaacatccatagcttgtttcctgtc
ctcatagataccaagaatgtgacaaaagagatctggaaggaactcagtttcccaagagct
tcaaatcttttggaggtttatgaagtcctaaacagtgacttgaatcctaccaagaattct
tgtccagtgatcatccatgcaagcgagtgtatcaaatatgttgagaccaaataccctcat
gaagcagcatatgacgccttcctttgtggatcagttctcttgaaggtggcacacttacta
ctatatagatcaactgggacctctttgcttggacaaaaactcagcttgtctccttttctc
acaagactgctaccaaggatttctctccccatcttctttcctcctgcttacagacccctc
tgctggctaccactgctcagattaatccagtccaaagcagacagtggtggtataaaactg
gagcccaccttccctcaatatcttgatgtgctgggtccctatgtgaaccaggtgaacctt
atccgagcatgtatctctaaaatcaatttctctggcccagattctcccagcagccggcca
cccacccttatcctcaaagtcaagaggtggcctggagtagatgaagaacagatctattat
gaattcaaagacctctgtaaattcgatgtccggcgattcacccggaaccagtttttgctt
atgaccaacaagttcaaggatgtcagaattgtgttgcaagaatacagatatcaccctgac
ctgcaagtgaccctgtatcgatactggaggcattcacctaatatcaactgcattctacaa
atctctggaattgttactgcttgggcctttctggcttttattctcggaggatctccatcg
aatgtatag
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