Sarcophilus harrisii (Tasmanian devil): 100925909
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Entry
100925909 CDS
T02286
Symbol
VPS16
Name
(RefSeq) vacuolar protein sorting-associated protein 16 homolog isoform X2
KO
K20180
vacuolar protein sorting-associated protein 16
Organism
shr
Sarcophilus harrisii (Tasmanian devil)
Pathway
shr04140
Autophagy - animal
shr04148
Efferocytosis
shr05132
Salmonella infection
Brite
KEGG Orthology (KO) [BR:
shr00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
100925909 (VPS16)
04148 Efferocytosis
100925909 (VPS16)
09160 Human Diseases
09171 Infectious disease: bacterial
05132 Salmonella infection
100925909 (VPS16)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
shr04131
]
100925909 (VPS16)
Membrane trafficking [BR:
shr04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
100925909 (VPS16)
Hops complex
100925909 (VPS16)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Vps16_N
Vps16_C
Motif
Other DBs
NCBI-GeneID:
100925909
NCBI-ProteinID:
XP_012408437
Ensembl:
ENSSHAG00000003874
LinkDB
All DBs
Position
6:192535933..192562867
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AA seq
815 aa
AA seq
DB search
MDWDLKEPLRDCLVAAAPYGGPIALLRNPWKKEKSPSIRPLLQIYSSSGVALASLLWKSG
PVVLLGWSAEEELLCVQEDGSVLVYGLHGDFRRHFSMGNEVLQNRVLDARVFHTEFGSGI
AILTGAHRFTLSANVGDLKLRRMPEVPGLQALPSCWTVLFQDRVTLVLLAIGPDLFLLDN
TACSGVVPPGLTPGVGGFLQMAVSFNYRYLALFTDTGHIWMGLASLKEKLYEFNCNIRAP
PKQIAWCNRPKGKQKAVVVAWERRLLVAGNAPESIQFVLEEDSYLVPELDGVRIFSRNVH
EFLHEVPVASEEIFRIASMAPGALLLEAQKEYEKESQKADEYLREIQEREQLPQAVRQCI
EAAGHEHQPEMQKSLLRAASFGKCFIDKFPPDTFVRMCQDLRVLNAVRDYPIGIPLTYTQ
YKQLTIEVLLDRLVLRRLYPLAIQICEYLRLPEVQGVSRILAHWACYKVQQKDVSDEDVA
RAINQKLGDTPGVSYSDIAARAYGCGRTELAIKLLEYEPRSGEQVPLLLKMKRSKLALSK
AIESGDTDLVFTVVLHLKNELNRGDFFMTLRNQPVALSLYRQFCKHQELETLKDLYNQDD
NHQELGNFHIRASYAAEERIEGRVAALQTAADEYYKAKNEFAAKATEEQMRLLRLQRRLE
DELGGHFLDLSLHDTVTSLLLGGNNKRAEQLARDFRIPDKRFWWLKLTALADREDWEELE
KFSKSKKSPIGYLPFVEVCMKRHNKFEAKKFAARVSPEQKVKAFLLIGDVAQAADVAIEH
RNEAELSLVLSHCTGASDGATADKIQRARALAQRK
NT seq
2448 nt
NT seq
+upstream
nt +downstream
nt
atggactgggacctgaaggaaccactcagagactgcctggtagctgcagctccatatggg
ggccccattgctctgttgagaaacccttggaagaaggagaagtcacccagcattcgacca
ttgcttcagatttattcatcctctggagtggctttggccagcttgttgtggaagagtggg
ccagtggtcttattgggctggtcggccgaggaagagctgttgtgtgtgcaggaagatggc
tctgtgctggtctatgggctgcatggggacttccggagacacttcagcatgggcaatgag
gtgctccagaaccgggttctcgatgcccgcgtgttccacacagagtttgggtcagggatc
gccatcctcactggtgcccatcgtttcactctcagtgccaatgtgggggacctgaagctt
cgtaggatgcctgaggtgccagggctgcaggctctgccctcgtgctggacagttctgttc
caagaccgagtgaccctcgtgctactagccattggtcctgacctcttcctgttggacaac
acagcctgctcgggggtggtacctcctggtttgactccgggagtggggggcttccttcag
atggccgtgtccttcaattatcggtacctggcattgttcactgacacaggccacatttgg
atgggcctggcttctcttaaggagaagctctatgagttcaactgcaacattcgtgcccca
cccaagcaaatagcctggtgtaatcgtccaaagggcaagcagaaggctgtcgtggtggcc
tgggagcgacggcttctggtggctggcaatgcacccgaaagcattcagttcgtactagaa
gaggattcatacctagtgcctgagctggatggagtccggatcttttcacgaaatgtccat
gagtttttgcatgaagttcctgtggccagtgaagagatctttaggattgcttcgatggcc
ccaggagctcttctactagaagctcagaaggaatatgagaaggagagccagaaggcagat
gaataccttcgggagatccaggagagggagcagctgcctcaggcagtccgacagtgcatc
gaggctgccggccacgagcaccagccggagatgcagaaaagcctgctcagggcagcctct
tttggaaagtgtttcattgacaagtttcccccggacaccttcgtgcgcatgtgtcaggac
ttgagggtgctcaatgccgtccgcgactaccccattggaatccccctcacctatacccaa
tacaagcagctcacaattgaggttttgctggacaggctggtactgcggcgactttaccct
ctggccatccagatctgcgaataccttcggctccctgaagttcagggtgtcagccgcatc
ctggcccactgggcttgttacaaggtgcagcagaaggacgtgtcagatgaagatgttgct
cgtgccattaaccagaagcttggggatacgccaggagtctcctactcagatattgccgcc
cgcgcctatggctgcgggcgcactgagcttgcgatcaagctattggagtatgagccgcgc
tctggggagcaggtgccccttctgctgaagatgaagaggagcaaattggccctgagtaaa
gccattgagagtggggacacagacttagtgtttacagttgtcttgcacctaaagaatgag
ctgaatcgtggagatttcttcatgactctcaggaaccagcccgtggccctgagtctgtac
cggcagttctgtaagcaccaggagctggagacactgaaggatctttacaaccaagatgac
aatcatcaagaacttggcaacttccacatccgggccagctatgctgctgaggagcggatt
gagggcagggtggcagcccttcagactgcagctgacgagtactacaaggccaagaacgag
tttgctgctaaggccacggaggagcagatgcggcttctgcggctgcagcggcgactggaa
gacgagctgggggggcacttcctggacctgtccttgcacgacacagtgacctccctcctc
cttgggggcaacaacaagcgtgctgagcagctggcccgggacttccgaatccccgacaaa
aggttctggtggttaaagctgactgcgctggccgaccgggaggactgggaagaactagaa
aagttttccaagagcaagaaatcgcccattgggtatctgccctttgtggaggtgtgtatg
aagcggcacaacaaattcgaagccaagaagtttgcggcccgagtgagccccgagcagaaa
gtcaaggctttcctcctcatcggggatgtggcgcaggctgcggacgtggccattgaacat
cggaatgaggccgagctcagcctcgtcctgtcccattgcaccggggcttcggatggagcc
acagccgacaagattcagcgtgcccgggccctggcccagaggaagtga
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