Sarcophilus harrisii (Tasmanian devil): 100926029
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Entry
100926029 CDS
T02286
Symbol
SMARCB1
Name
(RefSeq) LOW QUALITY PROTEIN: SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1
KO
K11648
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1
Organism
shr
Sarcophilus harrisii (Tasmanian devil)
Pathway
shr03082
ATP-dependent chromatin remodeling
shr03250
Viral life cycle - HIV-1
shr04714
Thermogenesis
shr05225
Hepatocellular carcinoma
Brite
KEGG Orthology (KO) [BR:
shr00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
100926029 (SMARCB1)
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
100926029 (SMARCB1)
09150 Organismal Systems
09159 Environmental adaptation
04714 Thermogenesis
100926029 (SMARCB1)
09160 Human Diseases
09162 Cancer: specific types
05225 Hepatocellular carcinoma
100926029 (SMARCB1)
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
shr01009
]
100926029 (SMARCB1)
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
shr03021
]
100926029 (SMARCB1)
03036 Chromosome and associated proteins [BR:
shr03036
]
100926029 (SMARCB1)
Protein phosphatases and associated proteins [BR:
shr01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
100926029 (SMARCB1)
Transcription machinery [BR:
shr03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
100926029 (SMARCB1)
SWI/SNF complex
100926029 (SMARCB1)
Chromosome and associated proteins [BR:
shr03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
100926029 (SMARCB1)
PBAF complex
100926029 (SMARCB1)
SWI/SNF complex
100926029 (SMARCB1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF5
INI1_DNA-bd
DUF1679
TdIF1_2nd
Motif
Other DBs
NCBI-GeneID:
100926029
NCBI-ProteinID:
XP_031804961
LinkDB
All DBs
Position
1:complement(714860609..714867603)
Genome browser
AA seq
384 aa
AA seq
DB search
MMMMALSRQFRRRSRXVLEEDGEFYMIGSEVGNYLRMFRGSLYKRYPSLWRRLATVEERK
KIVASSHGKKSKPSAKGASYLTLATSVTLLKASEVEEILDGNDEKYKAVSISTEPPTYLR
EQKAKRNSQWVPTLPNSSHHLDAVPCSTTINRNRMGRDKKRTFPLCFDDHDPAVIHENAS
QPEVLVPIRLDMEIDGQKLRDAFTWNMNEKLMTPEMFSEILCDDLDLNPLTFVPAIASAI
RQQIESYPTDSLLEDQSDQRVIIKLNIHVGNISLVDQFEWDMSEKENSPEKFALKLCSEL
GLGGEFVTTIAYSIRGQLSWHQKTYAFSENPLPTVEIAIRNTGDADQWCPLLETLTDAEM
EKKIRDQDRNTRRMRRLANTAPAW
NT seq
1155 nt
NT seq
+upstream
nt +downstream
nt
atgatgatgatggctctgagcagacagtttcggcggagaagcaggtgagttctggaggag
gacggcgagttctacatgatcgggtcggaggtggggaactacttgcgcatgttccggggg
tctctgtacaagaggtacccctccctgtggaggcgccttgccaccgtggaggagaggaag
aaaattgtggcgtcatcacatggtaaaaaatccaaacctagcgctaagggtgcgtcttac
ctcaccctggccaccagtgtgaccctgctgaaagcctctgaggtcgaggagatactcgac
ggcaatgacgagaagtacaaggccgtgtccatcagcacggagcctcccacctacctcagg
gaacagaaggccaagaggaacagccagtgggtgcccacgttgccgaacagctcccaccac
ctggacgccgtgccctgttccaccaccatcaacaggaaccgcatgggccgagataagaag
aggacctttcctctctgcttcgatgaccacgaccctgcggtgattcacgagaacgcatcc
cagcccgaggttctggtccctattaggctggacatggagatagacgggcagaagctgagg
gatgctttcacatggaacatgaacgagaagctgatgacccccgagatgttctcagagatc
ctctgtgacgacctcgacctgaaccccctcaccttcgtccccgccatcgcctcggccatc
cggcagcagattgagtcctaccccaccgacagcctcctggaggaccagtcggaccagcga
gtcatcatcaagctgaacatccacgtgggcaacatctccctggtggaccagttcgagtgg
gacatgtcggagaaggagaactccccggagaagtttgcgctgaagctctgctccgagctg
ggcctggggggcgagttcgtcaccaccatcgcctacagcatccgtggccagctcagctgg
caccagaagacctacgccttcagtgagaaccctctgcccaccgtggagatcgccattcgc
aacaccggcgacgccgaccagtggtgccccctcctggaaaccctgacagacgccgagatg
gagaagaaaatccgggaccaggacaggaacaccaggaggatgaggcgcttggccaacact
gcgcccgcctggtag
DBGET
integrated database retrieval system
