Sarcophilus harrisii (Tasmanian devil): 100926964
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Entry
100926964 CDS
T02286
Symbol
COL5A1
Name
(RefSeq) collagen alpha-1(V) chain isoform X1
KO
K19721
collagen type V/XI/XXIV/XXVII, alpha
Organism
shr
Sarcophilus harrisii (Tasmanian devil)
Pathway
shr04820
Cytoskeleton in muscle cells
shr04974
Protein digestion and absorption
Brite
KEGG Orthology (KO) [BR:
shr00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
100926964 (COL5A1)
09150 Organismal Systems
09154 Digestive system
04974 Protein digestion and absorption
100926964 (COL5A1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
shr00536
]
100926964 (COL5A1)
Glycosaminoglycan binding proteins [BR:
shr00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
100926964 (COL5A1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
COLFI
Laminin_G_2
Laminin_G_3
Laminin_G_1
Motif
Other DBs
NCBI-GeneID:
100926964
NCBI-ProteinID:
XP_012409446
Ensembl:
ENSSHAG00000016990
LinkDB
All DBs
Position
2:487498617..487794609
Genome browser
AA seq
1837 aa
AA seq
DB search
MDAHTRWKRRSWIRDWPLLVATFLLSALWPSHAAQPADLLKVLDFHNLPDGITKTTGLCA
SRKSSKGPDVAYRVTKDAQLSAPTKQLYPASSFPEDFSILTTVKAKKGNQAFLVSIYNEQ
GIQQIGLEMGRSPVFLYEDHMGKPGPEDYPLFRGINLSDGKWHRIAISVQNKNVTLVLDC
KKKTTKFLDRSDHPIIDVNGIIVFGTRILDEEVFEGDIQQLLIIPDARAAYDYCEHYSPD
CDTAVPDTPQSQDPNPDEYYPEGDGDGETYYYEYPYYEDPDDPAKAPTPTKKPVEAAGEA
TEIAEEQTPPPTDAPPVPETNERDDKEDPNLGGSDYDYGPINEEYYTPPPYEDIYDGVDD
PDQPTDTVGGAEIPTSTVIITNSTNTGPFPDPDQGKDDDIDNDFAVETIKDLDNYYDPYF
DPTISPSEIGPGMPANQDTIYEGIGGPRGEKGQKGEPAIIEPGMLIEGPPGPEGPAGLPG
PPGTAGPTGQVGDPGERGPPGRPGLPGADGLPGPPGTMLMLPFRFGGGGDAGSKGPMVSA
QESQAQAILQQARLALRGPAGPMGLTGRPGPVGPPGSGGLKGETGDMGPQGPRGVQGPPG
PAGKPGRRGRAGSDGARGMPGQTGPKGDRGFDGLAGLPGEKGHRGDPGPSGPPGSPGDDG
ERGDDGEVGPRGLPGEPGPRGLLGPKGPPGPPGPPGVTGMDGQTGPKGNVGPQGEPGPPG
QQGNPGAQGLPGPQGAIGPPGEKGPLGKPGLPGMPGADGPPGHPGKEGPPGEKGGQGPPG
PQGPIGYPGPRGVKGADGIRGLKGTKGEKGEDGFPGFKGDMGIKGDRGEIGPPGPRGEDG
PEGPKGRGGPNGDPGPLGPAGEKGKLGVPGLPGYPGRQGPKGSIGFPGFPGANGEKGGRG
TPGKPGPRGQRGPTGPRGERGPRGITGKPGPKGNSGGDGPSGPPGERGPNGPQGPTGFPG
PKGPPGPPGKDGLPGHPGQRGETGFQGKTGPPGPPGVVGPQGPTGETGPMGERGHPGPPG
PPGEQGLPGLAGKEGTKGDPGPAGIPGKDGPPGLRGFPGDRGLPGPVGALGLKGNEGPPG
PPGPAGSPGERGPAGAAGPIGLPGRPGPQGPPGPAGEKGAPGEKGPQGPAGRDGIQGPVG
LPGPAGPVGPPGEDGDKGEIGEPGQKGSKGDKGEQGPPGPTGPQGPIGQPGPSGGDGEPG
PRGQQGLFGQKGDEGPRGFPGPPGPVGLQGLPGPPGEKGETGDVGQMGPPGPPGPRGPSG
PPGADGPQGPPGGIGNPGAVGEKGEPGESGEPGLPGEGGLPGPKGERGEKGESGPSGAAG
PPGPKGPPGDDGPKGSPGPVGFPGDPGPPGEPGPAGQDGPPGDKGDDGEPGQTGSPGPTG
EPGPSGPPGKRGPPGPAGPEGRQGEKGAKGEAGLEGPPGKTGPIGPQGAPGKPGPDGLRG
IPGPVGEQGLPGSPGPDGPPGPMGPPGLPGLKGDSGPKGEKGHPGLIGLIGPPGEQGEKG
DRGLPGPQGSSGPKGEQGITGPSGPLGPPGPPGLPGPPGPKGAKGSSGPTGPKGEAGHPG
PPGPPGPPGEVIQPLPIQASRTRRNIDASQLLDDGNGENYMDYADGMEEIFGSLNSLKLE
IEQMKHPLGTQHNPARTCKDLQLCHPDFPDGEYWVDPNQGCSRDSFKVYCNFTAGGETCI
FPDKKSEGARITSWPKENPGSWFSEFKRGKLLSYVDSEGNPVGVVQMTFLRLLSASARQN
ITYNCYQSVAWQDATTGSYDKAIRFLGSNDEEMSYDNSPYIRALMDGCATKKGYQKTVLE
INSPKVEQVPIVDIMFNDFGEASQKFGFEVGPACFMG
NT seq
5514 nt
NT seq
+upstream
nt +downstream
nt
atggacgcccacacacggtggaaacggcgaagctggatacgcgactggccgctcctggtc
gccaccttcctcctctccgccctctggccgagtcacgcagctcaaccagcagatctctta
aaggtattagatttccacaatttgcctgatgggataacaaaaacaacaggtttgtgtgca
agcagaaaatcttccaaaggaccagatgttgcttaccgagttacaaaggatgctcaactc
agtgcacccaccaagcagctgtatcctgcttcatcatttcctgaggacttctccatttta
accactgtaaaagccaaaaaaggcaatcaggccttcttggtctccatttataatgaacag
gggatccaacagattggcctggagatgggcaggtctcccgtcttcctctatgaggaccac
atggggaaacctggaccagaggactatccactcttcaggggcattaacttatcagatggc
aagtggcacagaatagctattagtgttcaaaacaaaaatgtgacattggtattggattgt
aaaaagaagacaaccaagttcttggaccggagtgaccaccccatcattgatgtcaatggg
atcattgtgtttggtaccaggatcttggatgaggaagtgtttgagggtgatatccaacag
ctccttatcatccctgacgccagagcggcttatgattactgcgaacattacagcccggat
tgtgatactgctgttccagacaccccacagtctcaggaccccaatccagatgaatattat
ccagaaggagatggagatggtgagacatattactatgaatatccgtactatgaagaccct
gatgacccagcgaaagccccaacccccactaaaaagcctgttgaagctgctggagaagct
acggaaattgctgaggagcagactccaccaccgacagatgcaccacccgtccctgaaacc
aatgaaagggatgacaaagaagacccaaacctaggagggagtgactatgattatggaccc
atcaatgaagaatactacacaccacccccttatgaagacatctacgatggagttgatgac
cctgaccagcccactgacactgttggaggagctgagattcctactagcactgttatcatc
accaactccactaatactggaccatttccagacccagatcaagggaaagatgatgacata
gacaatgattttgctgtggaaactattaaggaccttgataattactatgatccctatttt
gatcccaccatctccccgtcagagattggaccagggatgcctgcaaaccaagataccatc
tatgaagggattggaggacctcgaggtgagaaaggacaaaaaggagagcctgcaatcatt
gagccgggaatgcttatcgaaggcccccctggtccagaaggccctgctggtcttccagga
cctccggggactgctggcccaacgggtcaagtgggtgatcccggagaaaggggtcctccc
ggccgcccaggccttcctggagccgatggtctgccaggacctccggggaccatgcttatg
ctgcctttccgatttggagggggaggtgatgcagggtcaaaaggaccaatggtctcagca
caggagtcacaagcccaagccattctacagcaggccaggttggcactaaggggaccagca
ggcccaatgggtcttactgggaggccaggtcctgtgggtcctcctgggagtggtggttta
aaaggagagacaggagatatgggacctcagggtcctcgtggtgttcaaggcccacctgga
ccagcaggaaagcctgggagaaggggaagagctggaagtgatggtgctaggggaatgcct
ggacaaactggacccaagggtgaccgtggttttgatgggctggctggtttgcctggagag
aagggacataggggtgatcctggtccttcaggccccccaggttctccaggagatgatggt
gaaagaggtgatgatggagaggttggacccagaggtctacctggagagcctggacctcgt
ggtttgcttggacccaagggcccacctggtccacctggaccccctggtgtgacgggtatg
gatggacaaactggcccaaagggaaatgtgggtcctcagggtgaacccggacccccagga
caacagggtaatccaggtgcccagggtcttccaggtcctcaaggtgcaattggcccacca
ggagaaaaaggtcccttaggtaaacctggacttccaggaatgcctggtgcagatggacct
cctggacatcctggcaaagaaggccctccaggggagaaaggtggtcagggtccacctggt
cctcagggtccaattggatatccaggtcctcgaggagtaaagggggcagatggaatccgt
ggtttgaaaggcaccaaaggcgaaaagggtgaagatggctttcctggatttaaaggtgac
atgggcattaagggagatcgaggtgagatagggccacctggacctagaggagaagatggc
ccagaaggcccaaaaggtcgtggtggtcctaatggtgacccaggtccccttggtcctgct
ggagaaaagggaaaacttggagtcccaggcttaccaggctaccctggaagacaaggtcca
aagggttcgattggttttcctggcttccctggagcaaatggagagaagggaggaagggga
acacctggaaaaccaggaccaagagggcaacgaggtccaacgggcccacgtggtgaaaga
ggtccaagagggatcactggcaagcctggacctaagggcaattctggtggtgatggccca
tctggtcctcctggagaacggggaccgaatggacctcaagggcccacaggatttcctgga
ccaaagggtcctcctggtcctccagggaaggatggacttcctgggcaccctggacagaga
ggtgaaactgggtttcaaggcaagactggtcctccaggccccccaggtgttgttggtccc
cagggtcccactggagaaactggcccaatgggagaacgtggccatcctggaccccctggc
cctccaggtgaacagggtctcccaggccttgccggaaaggaaggaactaagggtgatcca
ggccctgctggaatccctgggaaagatggtcctccagggttaagaggatttcctggtgat
cgaggtctccctggcccagtgggagctcttggattgaaaggaaatgaaggtcctcctggt
cctccaggtccagcagggtctccaggtgaaaggggcccagctggtgctgccggaccgatt
ggccttcctgggagacctggaccacaaggaccacctggacctgctggtgagaaaggtgcc
cctggtgagaaaggtcctcaagggccagctggccgagatggtattcagggtcctgtaggg
ctccctggcccagcgggtcctgtaggccctcctggagaagatggcgataagggtgaaatt
ggtgaaccagggcagaagggaagcaaaggagataaaggtgaacagggcccaccaggtcct
acaggtcctcaagggcccattggacagcctggtccctctggaggtgatggagagccaggt
ccacggggtcagcaaggtctttttggtcagaaaggtgatgaaggtccaagaggttttcct
ggtcctccaggcccagttggattgcagggcttaccaggacccccaggtgagaaaggagaa
actggagacgtcggtcagatgggccctcctggtccccctggtccccgaggaccatctggt
cctccaggagctgatggtccacaaggtcctccaggaggaataggaaatcctggagcagtg
ggagagaagggtgagcctggtgaatctggtgaacctggccttccaggtgaaggtggtctt
ccgggaccgaaaggagaaagaggagaaaagggtgaatcaggtccctctggtgctgcagga
cctcctgggcccaaaggcccacctggtgatgatggaccaaaaggaagccccggccctgtt
ggtttccctggtgatcctggtccccctggagagcctggtcctgcgggtcaagatggtcca
ccaggcgataaaggagatgatggtgaacctggtcaaactggatccccgggccctactggt
gaaccagggccatctggacctccaggcaaaaggggtcctcctggcccagctggcccagaa
ggaagacaaggagagaaaggagccaagggtgaagctggcttggagggcccacctggaaag
actggtccaattggtccccaaggtgcaccaggcaaacctggtcctgatggccttcgaggg
attccaggccctgtgggagaacaaggtctaccaggatctcctggcccagatggtcctcct
ggtcccatgggtcccccaggtcttccaggtctaaaaggagattcaggtcctaaaggtgaa
aagggtcatccaggtttgattggtcttattggacctcctggtgaacaaggtgaaaaaggc
gaccgaggtcttcctggacctcagggttcttcaggtcctaaaggagaacagggtataact
ggtccttctggtccccttggtcctcctggacctcccggtttaccaggccctcctggtccc
aaaggtgctaaaggttcttcaggtccaacaggtcccaaaggagaagctggccatcctggt
cctcctggtccacctggtcctccaggtgaagtcattcagccattgcccattcaggcttct
aggacccgacggaacattgatgccagccagttgcttgatgatggcaatggtgagaactac
atggattatgctgatggcatggaagagatctttggctcactcaactctttgaaactggaa
attgagcagatgaagcatcctttaggcactcagcacaatcctgctcgtacttgcaaggac
ttacaactctgccatcctgactttcctgatggtgaatactgggttgatcctaaccaagga
tgctccagggattctttcaaagtttactgcaatttcacagctggtggagaaacttgcatc
ttccccgataagaaatcagaaggagccagaattacttcctggcccaaggaaaacccaggc
tcctggttcagtgaattcaagcgtggtaaactgctctcctatgtggactcagaggggaat
ccagtcggagtggtacaaatgacattcctcaggctcctcagtgcttcagctcgtcagaac
atcacttacaactgctaccagtcagtcgcctggcaagatgccaccacgggcagctatgac
aaagccattcgcttcttgggctccaatgatgaagagatgtcctacgacaacagtccctac
atccgagctctcatggatggctgtgcaaccaagaaaggctaccagaagaccgttcttgaa
atcaactcccccaaagtggaacaagtgcctatcgtggacattatgtttaatgacttcggt
gaagcctcacagaaatttggatttgaagtgggaccagcttgcttcatgggttaa
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integrated database retrieval system
