Sarcophilus harrisii (Tasmanian devil): 100927131
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Entry
100927131 CDS
T02286
Symbol
DHX38
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16 isoform X1
KO
K12815
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX38/PRP16 [EC:
5.6.2.6
]
Organism
shr
Sarcophilus harrisii (Tasmanian devil)
Pathway
shr03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
shr00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
100927131 (DHX38)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
shr03041
]
100927131 (DHX38)
Enzymes [BR:
shr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
100927131 (DHX38)
Spliceosome [BR:
shr03041
]
Complex C
Other components
Step II factors
100927131 (DHX38)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
HA2_C
DEAD
AAA_22
HA2_N
AAA_19
T2SSE
nSTAND3
AAA_30
Flavi_DEAD
Microtub_bd
AAA_16
PhoH
SoDot-IcmSS
AAA_7
Sigma54_activ_2
Motif
Other DBs
NCBI-GeneID:
100927131
NCBI-ProteinID:
XP_031805890
Ensembl:
ENSSHAG00000016871
LinkDB
All DBs
Position
2:41156219..41180051
Genome browser
AA seq
1242 aa
AA seq
DB search
MPAFEREFPKPVMEDTSEDGEASIHRLEGIDQETQVGGLICKTKSASSEQHVFKAPAPRP
SLLGLDLLAALKRREREEKDDGEDKKKSRVSSYKDWEESKDDQKDSEEERSDQASRSSRK
DRHYRAARVETPSHPGGVSEEFWERSRQRERERREHGVYASSKEEKDRKKERTRDRDYDR
KRDRDERDRSRHSSRSDRDGGSERSSRRNEPESPRHRPRDAATPSRSNWEEEDSAYGSSR
RSQWESPSPVLSYRDSERSHRTSSTRDKERSVRSKCPDDTPLPTPSYKYNEWADDRRHLG
STPRLSRGRGRREDGEDGISFDTEEERQQWEDDQRQADRDWYMMDEGYDEFHNPLAYSSE
DYVKKREQHLHKQKQKRISAQRRQINEDNERWETNRMLTSGVVHRLEVDEDFEEDNAAKV
HLLVHNLVPPFLDGRIVFTKQPEPVIPVKDATSDLAIIARKGSQTVRKHREQKERKKAQH
KHWELAGTKLGDIMGLKKEEEPEKPLTEDGKVDYRTEQKFANHMKKKSEASSEFAKKKSI
LEQRQYLPIFAVQQELLTIVRDNSIVIVVGETGSGKTTQLTQYLHEDGYTDYGMIGCTQP
RRVAAMSVAKRVSEEMGGSLGEEVGYAIRFEDCTSENTVIKYMTDGILLRESLREADLDH
YSAIIMDEAHERSLNTDVLFGLLREVVARRSDLKLIVTSATMDAEKFAAFFGNVPIFHIP
GRTFPVDILFSKTPQEDYVEAAVKQSLQVHLSGAPGDILIFMPGQEDIEVTSDQIVEHLE
ELENAPALAVLPIYSQLPSDLQAKIFQKAPDGVRKCIVATNIAETSLTVDGIMFVIDSGY
CKLKVFNPRIGMDALQIYPISQANANQRSGRAGRTGPGQCFRLYTQSAYKNELLTTTVPE
IQRTNLANVVLLLKSLGVQDLLQFHFMDPPPEDNMLNSMYQLWILGAMDNTGGLTSTGRL
MVEFPLDPALSKMLIVSCDMGCSSEILLIVSMLSVPAIFYRPKGREEESDQIREKFAVPE
SDHLTYLNVYLQWKNNNYSTLWCNEHFIHAKAMRKVREVRAQLKDIMVQQRMSLASCGTD
WDIVRKCVCAAYFHQAAKLKGIGEYVNIRTGMPCHLHPTSSLFGMGYTPDYIVYHELVMT
TKEYMQCVTAVDGEWLAELGPMFYSIKHAGKSRQENRRRAKEEASAMEEEMALAEEQLRA
RRQEQEKRNPLGSVRSVKIYTPGRKEQGEPASPRRTPARFGL
NT seq
3729 nt
NT seq
+upstream
nt +downstream
nt
atgcccgcatttgagagagaattccctaagcctgtgatggaagacaccagtgaggatggc
gaggcttccattcatcgactagaaggcatcgaccaagagacccaggtcggcggccttatt
tgcaagaccaaaagcgcatcgagtgagcagcatgttttcaaagcccctgcacctcgtccc
tcattgctggggttagacctgttggctgcattaaaacggagggagcgagaggaaaaggat
gatggcgaagacaagaagaagtccagagtttcttcctacaaggattgggaggaaagcaag
gatgatcagaaggattctgaggaggaaaggagtgaccaggccagtcgaagcagcaggaaa
gacaggcattatcgagctgcccgcgtagagacaccatcccatcctggtggtgtaagtgaa
gagttctgggagcgaagcagacaaagagaacgggaaaggcgagaacatggtgtttatgcc
tcttccaaagaagaaaaggaccggaaaaaggagagaactcgggaccgagactatgaccgg
aagagagatagagatgaacgggataggagtcggcacagcagtagatcagaccgagatggt
ggttcagagcggagcagcaggaggaatgagccagagagtccaagacatcgacccagggat
gcagcaaccccttcccgttctaattgggaagaagaagatagtgcatatggtagctcccga
cgttctcagtgggaatcaccctccccggtactttcttatcgggattctgagaggagtcac
cgtacttcttccactcgtgataaggaaaggtctgtgaggagcaagtgcccagatgacaca
cctctacctaccccatcgtacaagtacaatgaatgggctgatgacagaagacacttaggg
tctactcctcggctttccagaggccgaggaaggcgggaagatggagaagatggaatctcc
tttgacaccgaagaggagcggcaacagtgggaagatgaccagaggcaagctgatcgggac
tggtacatgatggatgagggatatgatgagtttcataacccactggcttattcttcagaa
gactatgtgaagaaacgagagcagcatctccacaaacaaaaacaaaaacgcatttcagcc
cagcggagacaaatcaatgaggataatgagcgctgggagactaaccgcatgctgaccagt
ggtgtggtccatcgacttgaagtagatgaagattttgaggaagataatgcagccaaggtg
catctgctggtgcacaatttggtgccaccctttttggatgggcgcattgtttttactaaa
caaccagagcctgttattccagttaaggatgctacttctgacttggccattattgctcga
aaaggaagccagacagtacgcaagcacagggaacaaaaggaacgtaaaaaggcccagcac
aagcattgggaactggctggtaccaaattgggagatattatgggcctcaagaaagaagaa
gaaccagaaaaacctttgacagaagatggcaaagtagactacaggacggagcaaaaattt
gctaatcacatgaagaagaagagtgaagccagcagtgagtttgccaaaaagaagtccatt
ctggagcagaggcagtacctacctatctttgcagtgcagcaggagttgctcaccattgtc
agagacaacagcattgtcatagttgtgggggagacagggagtggaaagaccactcagcta
actcagtacttacatgaagatggttacacagactatggcatgattggctgcactcagccc
cggcgtgtagctgccatgtcagtagccaagagagttagtgaagagatgggaggaagcctt
ggagaggaggtgggttacgccatccgctttgaagattgtacttctgaaaacactgtgata
aagtacatgacagatgggatcctgcttagagagtcacttcgagaggccgacctggatcat
tatagtgccattatcatggacgaagcccacgagcgttcgctgaacacagatgtgctgttt
ggcttgcttcgagaggtagtagctcgacgctctgacctgaagcttattgtcacttcagcc
actatggatgcagagaaatttgctgctttctttggcaatgttcccatctttcacattcct
ggccgaaccttccctgttgatatcctcttcagcaagacccctcaggaggattacgtggaa
gctgcagtgaagcagtcgttgcaggtgcacctctctggggctcccggggacatcctcatc
ttcatgcctggacaagaggacattgaggtgacttctgatcagatcgtggaacatctggag
gaactggagaatgctccagccctggctgtgcttcccatctactcccagctgccctctgac
ctccaggccaagatcttccaaaaggctccagatggagtcaggaaatgtattgtggccacc
aacattgcagagacttccctgactgtggatggcatcatgtttgttattgattctggctac
tgcaaactaaaggtcttcaaccccaggattgggatggatgctctacaaatctaccccatt
agtcaggccaatgctaaccagcgatccgggagagctgggaggacgggcccaggtcagtgc
ttcaggctctatacccagagtgcttataaaaatgagctcttgaccacaacagtacctgaa
attcagagaactaatttggctaatgtcgtgctgctgctcaaatctttaggagtccaggac
ttgcttcagttccattttatggacccacccccagaagacaacatgttgaattctatgtac
caactctggatcctaggggctatggataacacaggtggtcttacatccactgggcggctg
atggtggagttccccctggacccagccctctctaagatgctgattgtctcctgtgacatg
ggttgtagttctgagattctgctgattgtttccatgctctcagtcccagccatattctat
agacctaagggccgagaagaggagagtgatcaaattcgggaaaaatttgcggtccctgag
agtgatcatttgacgtacttgaatgtatatctacaatggaagaacaataattactccact
ctgtggtgtaatgaacacttcatccatgccaaggccatgagaaaggttcgagaggtgcgg
gcccagctgaaggatatcatggttcagcagcggatgagcttggcttcctgtggcactgac
tgggacattgtcaggaagtgtgtctgtgcagcctattttcaccaggcagccaaactaaag
ggaattggagaatatgtaaatatccggacaggaatgccttgccatttgcatcctaccagc
tctctctttggaatggggtatactccagattacattgtatatcatgaattggtcatgact
acaaaggagtacatgcagtgtgtgactgctgtggatggggagtggctagcagagttgggc
cccatgttttatagcattaaacatgcaggcaaatcacgccaggagaaccgccgtcgggcc
aaagaggaagcatctgctatggaagaggagatggcattggctgaagagcagttacgagcg
cgacgacaggagcaggaaaagcgtaaccccctaggcagtgtaaggtctgttaagatctac
acgcctggacggaaggagcaaggggagcctgctagtcctcgccggaccccagcccgcttt
ggactctga
DBGET
integrated database retrieval system
