Sarcophilus harrisii (Tasmanian devil): 100927218
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Entry
100927218 CDS
T02286
Symbol
PRPF4
Name
(RefSeq) U4/U6 small nuclear ribonucleoprotein Prp4
KO
K12662
U4/U6 small nuclear ribonucleoprotein PRP4
Organism
shr
Sarcophilus harrisii (Tasmanian devil)
Pathway
shr03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
shr00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
100927218 (PRPF4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
shr03041
]
100927218 (PRPF4)
Spliceosome [BR:
shr03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6 snRNP specific factors
100927218 (PRPF4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_Prp19
WD40
WD40_CDC20-Fz
WD40_WDHD1_1st
Beta-prop_EML_2
Beta-prop_CAF1B_HIR1
EIF3I
WDR55
Beta-prop_WDR90_POC16_2nd
Beta-prop_TEP1_2nd
WD40_MABP1-WDR62_2nd
Beta-prop_WDR75_1st
ANAPC4_WD40
PRP4
Beta-prop_EML
WD40_MABP1-WDR62_1st
WDR90_beta-prop_4th
NBCH_WD40
Beta-prop_TEP1_C
Beta-prop_EIPR1
Beta-prop_DCAF4
Beta-prop_SCAP
Beta-prop_IFT122_1st
Beta-prop_Vps41
WD_LRWD1
Beta-prop_IFT140_1st
WD40_like
Beta-prop_WDR35_TULP_N
Beta-prop_WDR11_1st
Motif
Other DBs
NCBI-GeneID:
100927218
NCBI-ProteinID:
XP_003757357
Ensembl:
ENSSHAG00000017658
UniProt:
G3WZG5
LinkDB
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Position
2:complement(478347199..478363209)
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AA seq
523 aa
AA seq
DB search
MASSRASATATKTPSRTPEDTASPVVKKPHIYYGSLEEKEKERLARGESGMLGKEGIKAG
IEAGNINITSGEVFEIEEHISERQAEVLAEFERRKRARQINVSTDDSEVKACLRALGEPI
TLFGEGPAERRERLRNILSVVGTDALKKTKKDDEKSKKSKEEYQQTWYHEGSNNLKTARL
WIANYSLPRAMKRLEEARLHKEIPETSRTSQKQELHKSLRSLNNFCSQIGDDRPISYCHF
SPNSKLLATACWSGLCKLWSVPDCSLLHTLRGHNTNVGAIVFHPKSTVSLDKKDVNLASC
AADGSVKLWSLESDEPVADIEGHSVRVARVMWHPSGRFLGTTCYDRSWRLWDLEAQEEIL
HQEGHSMGVYDIAFHQDGSLAGTGGLDAFGRVWDLRTGRCIMFLEGHLKEIYGINFSPNG
YHIATGSGDNTCKVWDLRQRRCVYTIPAHQNLVTGVKFEPIHGNFLLTGAYDNTAKIWTH
PGWSPLKTLAGHEGKVMGLDISSDGQLIATCSYDRTFKLWMAE
NT seq
1572 nt
NT seq
+upstream
nt +downstream
nt
atggcttcttctcgcgcttcggccacggcaaccaaaacccctagcaggactcctgaagat
actgcctcccctgtggtgaagaagcctcatatctactatggcagtttggaagagaaagag
aaggagcgtcttgccagaggggaatcagggatgttggggaaagaaggaattaaagctgga
attgaggctggaaatattaacataacatctggggaggtttttgaaattgaagaacatatc
agtgaaaggcaagcagaagtattggctgagtttgagcgacggaagcgagccaggcaaatc
aatgtttccacggatgactcggaagttaaggcttgccttcgagctttgggtgaaccaatc
acactctttggtgaaggccctgctgaaaggagagagagattgagaaatattctctctgtg
gttggcacagatgccttaaaaaagaccaaaaaggatgatgaaaaatcgaaaaagtccaaa
gaggagtatcaacaaacttggtaccatgaaggatccaacaacctgaagactgctaggctg
tggattgctaattattcactacccagagcaatgaagcgcttggaagaagcccgtctccat
aaagagattccagagacatctaggacatcccaaaagcaggaattacataaatctcttcgg
tctttgaataacttctgcagccagattggagatgatcgtcccatctcctattgtcatttt
agtcccaattccaaactcctggccacagcgtgttggagcgggctgtgcaaactctggtct
gtccctgattgcagcctcctgcataccctaagaggccacaacactaatgttggagcaatt
gtttttcaccccaaatccactgtttccttggataagaaagatgtcaacctggcctcttgt
gctgctgatggctctgtgaaactctggagtctggagagtgatgagcctgtggcagatatt
gaaggccattcggtacgtgtagcaagagtgatgtggcatccttcaggacgttttctgggc
accacctgctacgaccgttcatggcgcctgtgggacttggaggcccaggaagagattcta
catcaggagggccacagcatgggcgtgtatgacattgccttccatcaggatggttctttg
gctggcactgggggactggatgcatttggtcgtgtatgggacctgcgtacaggtcgatgc
atcatgttcctagagggccacctgaaggagatttatgggatcaacttttccccaaatggc
taccacattgcaactggtagtggcgacaacacatgcaaagtgtgggacctcaggcagcgg
cgttgtgtctataccatccctgctcaccagaacttggtgactggagtcaagtttgagcct
atccatgggaacttcttgcttactggtgcctatgacaacacagccaagatctggacacac
cctggctggtctccactgaagaccctggctggccacgaggggaaagtgatgggtctggac
atttcttcagatggtcagctcatagccacctgttcctatgataggaccttcaaactttgg
atggctgaatag
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integrated database retrieval system
