Sarcophilus harrisii (Tasmanian devil): 100927308
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Entry
100927308 CDS
T02286
Symbol
CPSF3
Name
(RefSeq) cleavage and polyadenylation specificity factor subunit 3 isoform X1
KO
K14403
cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-]
Organism
shr
Sarcophilus harrisii (Tasmanian devil)
Pathway
shr03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
shr00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
100927308 (CPSF3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
shr03021
]
100927308 (CPSF3)
03019 Messenger RNA biogenesis [BR:
shr03019
]
100927308 (CPSF3)
Transcription machinery [BR:
shr03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
100927308 (CPSF3)
Messenger RNA biogenesis [BR:
shr03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
100927308 (CPSF3)
U7-dependent histone pre-mRNA processing factors
100927308 (CPSF3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CPSF73-100_C
Beta-Casp
Lactamase_B_6
Lactamase_B
RMMBL
Anti-Pycsar_Apyc1
Lactamase_B_2
Lactamase_B_3
Beta_lactamase3
Motif
Other DBs
NCBI-GeneID:
100927308
NCBI-ProteinID:
XP_003757924
Ensembl:
ENSSHAG00000007024
UniProt:
G3VY42
LinkDB
All DBs
Position
2:195052666..195106195
Genome browser
AA seq
684 aa
AA seq
DB search
MSAIPAEESDQLLIRPLGAGQEVGRSCIILEFKGRKIMLDCGIHPGLEGMDALPYIDLID
PAEIDLLLISHFHLDHCGALPWFLQKTSFKGRTFMTHATKAIYRWLLSDYVKVSNISADD
MLYTETDLEESMDKIETINFHEVKEVAGIKFWCYHAGHVLGAAMFMIEIAGVKLLYTGDF
SRQEDRHLMAAEIPNIKPDILIIESTYGTHIHEKREEREARFCNTVHDIVNRGGRGLIPV
FALGRAQELLLILDEYWQNHPELHDIPIYYASSLAKKCMAVYQTYVNAMNDKIRKQININ
NPFVFKHISNLKSMDHFDDIGPSVVMASPGMMQSGLSRELFESWCTDKRNGVIIAGYCVE
GTLAKHIMSEPEEITTMSGQKLPLKMSVDYISFSAHTDYQQTSEFIRALKPPHVILVHGE
QNEMARLKAALIREYEDNDEVHIEVHNPRNTEAVTLNFRGEKLAKVMGFLADKKPEQGQR
VSGILVKRNFNYHILSPCDLSNYTDLAMSTVKQIQAIPYTGPFSLLFYQLQKLTGDVEEI
DIQQKPALKVFKNITVIQEPGMVVLEWLANPSNDMYADTVTTVILEVQSNPKIQKGAVPK
VSKKIEMHIYSKRLEIMLQDIFGEDCVSVKEGSILSVTVDGKTANISLETRTVECEEGSE
DDESLREMVELAAQRLFEALTPVH
NT seq
2055 nt
NT seq
+upstream
nt +downstream
nt
atgtcggcgatcccggcggaggagagtgaccagctgctgatccgcccgcttggggctgga
caagaagtaggaagatcatgtattattctggaattcaaaggaagaaaaataatgttggat
tgtggaattcatcctggcttagaaggaatggatgctcttccttacattgatttgatagat
cctgctgagattgatcttctcttaattagtcatttccatttagatcactgtggtgcctta
ccttggtttcttcagaagacaagtttcaagggaagaacatttatgactcatgctacaaaa
gctatttatagatggcttctttctgattatgtcaaagttagtaacatatcagcagatgac
atgctatatactgaaacagatttagaagagagcatggacaaaattgaaactataaacttt
catgaagtaaaggaagttgcaggaatcaaattttggtgttatcatgcaggccatgttctg
ggagcagccatgtttatgattgagattgcaggtgtaaagcttttatacacaggtgatttt
tcaagacaagaagataggcacttaatggcagctgaaattcctaatattaaaccagatatt
cttattattgaatctacatatgggactcacattcatgaaaaacgagaagagcgagaggca
agattctgtaacactgttcatgacattgtaaatagaggtggcagaggtcttattcctgtc
tttgctctgggacgagctcaagaacttcttttaattttagatgaatattggcagaatcat
ccagaactccatgacattccaatatactatgcatcatctttggctaagaagtgtatggcg
gtatatcagacctacgtgaatgccatgaatgacaaaatccgtaaacaaatcaatatcaac
aatccttttgtcttcaaacatattagtaatctcaagagcatggatcattttgatgacatt
ggtccaagtgttgtgatggcttcaccaggaatgatgcagagtggcttatccagagaatta
tttgaaagttggtgtactgataaaagaaatggtgtgattatagcaggatactgcgttgaa
ggaacacttgccaagcatatcatgtctgaacctgaagagattactaccatgtctggacag
aagctgcctctgaaaatgtctgtagattatatttctttctcagctcacacagattatcaa
caaaccagcgaatttattcgagctttgaagccaccccatgtgatactagtgcatggagag
cagaatgaaatggcaagattaaaagcagcattgataagagaatatgaagacaatgatgag
gttcacatagaagttcacaatcctcgaaatactgaagcagtgactttaaatttccgaggt
gaaaaactagccaaggttatgggcttcttagcagacaagaaacctgaacaaggacaacgt
gtctcaggaatcttggttaaaagaaattttaattatcacattctttcaccttgtgacctc
tctaattatacagatttagcaatgagtactgtaaaacagattcaagccattccctacact
ggtccttttagcttgctattttatcagctacagaaactgacaggtgatgtagaagaaatt
gacattcagcaaaaaccagctttgaaagtgttcaaaaatattactgtaatacaggaacca
ggcatggtagtgttagagtggttagcaaatccttccaatgatatgtatgcagatacagta
acaacagtgatccttgaagttcagtcaaaccctaaaatacagaaaggtgcagtaccaaag
gtatcaaaaaaaatagaaatgcacatttacagcaagagattggagattatgcttcaggac
atatttggggaagattgtgtaagtgttaaagaaggatccattctaagtgtcacagtggat
ggaaagactgccaatatatcgttggagacaagaacagttgaatgtgaagaaggaagtgaa
gatgacgagtcccttcgagaaatggtagaacttgctgcacaaagactttttgaggccctc
acaccagttcattaa
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