Sarcophilus harrisii (Tasmanian devil): 100927342
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Entry
100927342 CDS
T02286
Symbol
TRIM28
Name
(RefSeq) transcription intermediary factor 1-beta
KO
K08882
tripartite motif-containing protein 28 [EC:
2.3.2.27
]
Organism
shr
Sarcophilus harrisii (Tasmanian devil)
Brite
KEGG Orthology (KO) [BR:
shr00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01001 Protein kinases [BR:
shr01001
]
100927342 (TRIM28)
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
shr04121
]
100927342 (TRIM28)
Enzymes [BR:
shr01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
100927342 (TRIM28)
Protein kinases [BR:
shr01001
]
Serine/threonine kinases: Other
TIF1 family [OT]
100927342 (TRIM28)
Ubiquitin system [BR:
shr04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRIM/RBCC proteins
100927342 (TRIM28)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-B_box
ANCHR-like_BBOX
PHD
zf-RING_5
zf-RING_UBOX
PHD-1st_NSD
PHD_2
zf-RING_2
zf-C3HC4
DUF7615
YaaC
Motif
Other DBs
NCBI-GeneID:
100927342
NCBI-ProteinID:
XP_031819971
UniProt:
G3VQW4
LinkDB
All DBs
Position
3:complement(611139231..611144531)
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AA seq
865 aa
AA seq
DB search
MAASVAAGAGSPGSGDGPAGADKRGPGGPAGAASAASGGPSAPGPAASSAASAASSAAAS
SSAGAPSGPAAAAASASGASGSAAAASGAASGGGPSEAAELLEHCGVCRERLRPEREPRL
LPCLHSVCGQCLLLGPASAPGAAAGTAAGPAAANNGGDGAVVDCPVCKQQCFAKDIVENY
FMRDSGAKAAPDPKDANQCCTSCEDNAPATSYCVECSEPLCETCVEAHQRVKYTKDHTVR
STGPAKSRDGERTVYCSVHKHEPLVLFCESCDTLTCRDCQLNAHKDHQYQFLEDAVRNQR
KLLASLVKRLGDKHATLQKNTKEVRTSIRQVTDVQKRVQVDVKMAILQIMKELNKRGRVL
VNDAQKVTEGQQERLERQHWTMTKIQRHQEHILRFASWALESDNNTALLLSKKLIYFQLH
RALKMIVDPVEPQGDMKFQWDLNAWTKSAEAFGKIVSERSGPGSMAPPRAPGKPGGNQAM
DLQEGYGSYGPDDPYSAEPNVSGMKRSRSGEGEVSGLMRKVPRVSLERLDLDLTADSQPP
VFKVFPGTTNEDYNLIVIERGGQPGAPGGPPMPPMAMVKEEETEAAIGAPPGVEGLETKP
LLLPPLEASGPEGPHLASPSGSTSSGLEVLGGPEAAAAATAASGGPGAVDDSATVCRVCQ
KPGDLVMCSQCEFCFHLECHLPALQEVPGEEWSCSLCQEVVDCKDEVPLPGPESVALTPD
GNTCPAKLSPTNQQKCERVLLALLCHEPCRPLHRLATDPTPSAEQPGTLDLTLIRARLQE
KLSPPYSSPQEFAQDVGRMFKQFNKLTEDKADVQSIIGLQRFFETRMNEAFGDTKFSAIL
VEPLPPIPGPGLAPPELVGGPSDGN
NT seq
2598 nt
NT seq
+upstream
nt +downstream
nt
atggcggcgtctgtggcggcaggcgcgggcagccccgggtccggggacgggcccgcgggt
gccgacaagcgtgggcccggggggcccgcgggagcggcctcggccgcgtctggagggccc
tctgcgccagggcccgccgcgtcgtccgcggcctccgccgcttcgtccgccgcagcctcg
tcgtcagccggggcgccttcggggcccgcggccgccgccgcctcggcttcgggcgcctcc
gggtccgccgccgccgcctcgggcgccgcctcgggcggagggccgagtgaggcggccgag
ctgctggagcactgcggcgtgtgccgcgagcggctgcggcccgaacgggagccgcgattg
ctgccctgcctgcactcggtgtgcggccagtgcctgctcctcgggcccgcctccgcgccc
ggcgccgccgccggcaccgccgccgggcccgccgcagccaacaacgggggcgatggcgcg
gtagtggactgccccgtgtgcaaacagcagtgcttcgccaaggacatcgtggagaactac
ttcatgcgggacagcggcgccaaggcggccccggaccccaaggatgccaaccagtgctgt
accagctgcgaggataacgccccagccaccagctactgtgtggagtgctcggagccgctg
tgcgagacctgcgtggaggcccaccagcgggtcaagtacaccaaggaccacacggtccgc
tccacaggccccgccaagtcccgcgatggggaacggactgtctactgctcggtccacaag
cacgagcccctggtgctgttctgcgagagctgcgatactctcacttgccgggactgccag
ctcaatgcccacaaggaccatcagtaccagttcctggaggatgccgtcagaaaccagagg
aagctcctggcctccttggtcaagcgcctgggggacaagcacgccaccctgcagaagaac
accaaggaagtgcgcacctccatccgccaagtgacagatgtgcagaagcgggtacaggtg
gatgtaaagatggccatcctgcagatcatgaaggagctcaacaagcggggccgtgtgctg
gtcaacgacgcccagaaggtgacggagggccagcaggagcggctggagcgccagcactgg
accatgaccaagattcagcggcatcaggagcacatcctgcgctttgcctcctgggccctg
gagagcgacaacaacacggccctgctgctgtccaagaagctgatttacttccagctgcac
cgagctctcaagatgatcgtggaccccgtggagcctcagggcgacatgaagttccagtgg
gacctcaacgcctggaccaaaagtgccgaggccttcggcaagattgtttctgagagaagt
ggtcctggttccatggccccgccccgggcccctggaaagcctggagggaatcaggccatg
gacctgcaggagggctatgggagttacggcccagatgatccctacagcgctgaacccaac
gtgtctggaatgaagaggtcccggtccggtgagggggaagtgagcggcctcatgcggaag
gtgcccagggtgagcctggagcgcctcgatctggacctgaccgcggacagccagcccccc
gtcttcaaagtcttcccggggaccactaacgaggactacaacctcattgtcattgagagg
gggggccagcctggggccccagggggtcctcccatgccccccatggccatggtcaaggag
gaagagacagaagctgccatcggagcccccccaggggtggaggggctggagacaaaacca
ctgctgctgcctcccctggaggcctcgggccctgaaggcccccacctggcctcccccagc
ggcagcaccagctctggcctggaagtgttgggaggccccgaggcggccgcggcagccaca
gcggcctccggcggccccggagctgtggatgacagcgccactgtctgccgtgtctgccag
aagccgggtgacctggtgatgtgtagccagtgcgaattctgcttccatttggagtgtcac
ctgcctgccctgcaggaggtgccaggggaggagtggagctgttccctctgccaggaagtg
gtggactgtaaagatgaggttcctcttcccggccccgagagcgtggccttgacccctgat
gggaacacctgccctgccaagctgtcgcccactaaccagcagaaatgcgaacgtgtgctg
ctggccctgctctgccacgagccctgccgccccctgcaccggctggccacagatcccacg
ccctcggcggagcagcccgggaccctggacctcactctgatccgggcgcgcctccaggag
aagctatcgcccccctacagctccccccaggagtttgcccaggacgtgggccgcatgttc
aagcaattcaataagcttacagaggacaaagccgacgtgcagtccatcatcgggctccag
cgcttcttcgagactcgcatgaacgaggctttcggggacaccaagttctcggctattctg
gtggagccccttccgcccatcccaggccccggtctggcacctccagagctggtggggggc
cccagtgacggtaactga
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