Sarcophilus harrisii (Tasmanian devil): 100927486
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Entry
100927486 CDS
T02286
Symbol
VLDLR
Name
(RefSeq) very low-density lipoprotein receptor isoform X1
KO
K20053
very low-density lipoprotein receptor
Organism
shr
Sarcophilus harrisii (Tasmanian devil)
Pathway
shr05017
Spinocerebellar ataxia
shr05417
Lipid and atherosclerosis
Brite
KEGG Orthology (KO) [BR:
shr00001
]
09160 Human Diseases
09164 Neurodegenerative disease
05017 Spinocerebellar ataxia
100927486 (VLDLR)
09166 Cardiovascular disease
05417 Lipid and atherosclerosis
100927486 (VLDLR)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
shr04131
]
100927486 (VLDLR)
Membrane trafficking [BR:
shr04131
]
Endocytosis
Clathrin-mediated endocytosis
Low-density lipoprotein receptor (LDLR) family proteins
100927486 (VLDLR)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ldl_recept_a
Ldl_recept_b
FXa_inhibition
cEGF
EGF_CA
EGF_LRP2
SGL
EGF
hEGF
Motif
Other DBs
NCBI-GeneID:
100927486
NCBI-ProteinID:
XP_031799879
Ensembl:
ENSSHAG00000001123
UniProt:
G3VDK5
LinkDB
All DBs
Position
1:296585882..296624526
Genome browser
AA seq
805 aa
AA seq
DB search
MGTSSLWGLWLLVAMWCLSGERSIVEGTRTKCESSQFQCSNGRCITLLWKCDGDEDCSDG
SDESSCVKKTCAESDFVCNNGQCVPNRWQCDGDPDCEDGSDERPEQCSNVTCSPEEFTCS
SGRCISKNFVCNGQDDCSDGSDELDCAPPTCGAHEFQCSTSSCIPISWVCDDDADCSDQS
DESLEQCGRQPVPHEKCPASEIQCGSGECIHMKWRCDGDPDCKDGSDEINCPSRTCRPDQ
FECEDGNCIHGSRQCNGVRDCIDGTDELNCKNANQCSGPGKFKCRSGECIDISKVCNQQQ
DCKDWSDEPLKECNINECLINNGGCSHICKDLIIGYECDCAAGFELIDRKTCGDIDECQN
PGICSQICINLKGGYKCECSRGYQMDLATGVCKAVGKEPSLIFTNRRDIRKIGLERKEYI
QLVEQLRNTIALDADIAAQKLFWADLSQKAIFSATIDARDKVGRHVKMIDNVYNPAAIAV
DWVYKNIYWTDVASKTISVATLDGTKRKILFNSDLREPASIAVDPLSGFVYWSDWGEPAK
IEKAGMNGLDRRPLVTVDIQWPNGITLDLVKSRLYWLDSKLHMLSSVDLNGQDRRIVLKS
LEFLAHPLAVTIFEDRVYWIDGENEAVYGANKFTGSELATLVNNLNDAQDIIVYHELIQP
AGKNWCEEDTENGGCEYLCLPAPQINDHSPKYACSCPNGYYLEGDGRACKRINVTTAISE
VNASPGGTSAAWAILPVLLLAMAATGGYFMWRNWQHKNMKSMNFDNPVYLKTTEEDLTID
IGRHSTSVGHTYPAISVVSTDDDLA
NT seq
2418 nt
NT seq
+upstream
nt +downstream
nt
atgggcacgtcctcgctctggggactctggctcctagtcgcaatgtggtgtttgtctgga
gagcgcagcattgtggaggggacaagaacaaaatgtgagtcatctcaattccagtgcagc
aacggccgctgtattactttgttgtggaagtgtgatggtgatgaagactgtagtgatggc
agtgatgagagttcatgtgtgaagaagacatgtgccgagtctgactttgtatgcaataat
ggccagtgtgtaccaaacagatggcagtgtgatggggacccagactgtgaagatggatct
gatgaaaggccagaacaatgtagcaatgtaacttgtagtccagaagaattcacttgttcc
agtggccgatgcatctctaaaaactttgtctgcaatggtcaggatgattgtagtgatggg
agtgatgagttggattgtgctcctcctacatgtggtgcccatgagttccagtgtagcact
tcttcctgtatccccattagttgggtctgtgatgatgatgctgattgctctgaccagtct
gatgagtcccttgagcagtgtggacgccaacctgtgcctcatgaaaagtgcccagccagt
gagatccaatgtggttcaggggagtgtatccatatgaagtggcgctgtgatggtgaccct
gactgcaaagatggaagtgatgagataaactgtccttcacgaacatgtcgtcctgaccag
tttgaatgtgaagatggcaactgtattcatggcagcagacagtgcaatggggtcagagat
tgtatagatggtacagatgaactcaattgcaaaaatgccaatcagtgctctggacctgga
aaattcaagtgcagaagtggggaatgtatagacatcagcaaagtgtgcaaccagcaacaa
gactgcaaggactggagtgatgaacctctaaaagagtgcaatataaatgaatgcttgatt
aacaatggtggatgctcccatatctgcaaagacctaattataggttatgaatgtgactgt
gctgctggatttgaactgatagataggaagacatgtggtgatattgatgaatgccaaaat
cctggaatctgcagtcaaatttgtatcaacttaaaaggcggttacaaatgtgaatgtagt
cgtggctatcaaatggatcttgccactggagtgtgcaaggcagtaggaaaggaaccgagt
ttaatcttcactaatcgtagggacatcagaaaaattggcctggaaaggaaagaatacatt
caacttgtagagcaactaagaaataccatagcactagatgctgacatagctgctcagaag
ttattttgggctgatctaagccaaaaagcaatcttcagtgccacaattgatgctcgtgac
aaagttggtagacatgttaaaatgatcgacaatgtctataatcctgcagccattgctgtt
gactgggtctacaagaatatctactggactgatgtggcttccaagactatttcagtggct
actttagatggaaccaagaggaagattctatttaattctgatttgcgagagcctgcctcc
atagctgtggacccattgtctggctttgtttactggtcagactggggagaaccagctaaa
atagaaaaagcaggaatgaatggacttgacaggcggccactggtgactgtagatattcaa
tggcctaatggaattacacttgaccttgtaaaaagtcgtctctattggctcgattctaaa
ctacacatgctgtccagtgtggatttgaatggtcaagatcgtagaatagtactcaagtct
cttgagttcctagcacatcctcttgctgtcacaatatttgaggaccgtgtctattggata
gatggtgaaaatgaagcagtgtatggtgccaacaagtttacagggtccgaattggctact
ctggttaacaacctaaatgatgctcaagatataattgtataccatgaactcatacaacca
gcaggtaaaaactggtgtgaagaagatactgaaaatggaggctgtgagtacctctgtcta
ccagcaccacagattaatgatcattctccaaaatatgcctgttcctgtcccaatgggtat
tatctggaaggtgatggcagggcatgtaaaagaatcaatgtgactactgcaatatcagaa
gtaaatgcttctccaggaggaacttcagctgcctgggccatccttcctgtcttgcttttg
gctatggctgccactggtggttactttatgtggaggaactggcaacacaagaacatgaaa
agcatgaattttgacaatccggtctacttgaaaaccacagaagaagatctcacgatagat
attgggagacatagtacttccgttggtcacacttatccagcgatatcagttgtaagtaca
gatgatgacctagcttga
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