Sarcophilus harrisii (Tasmanian devil): 100927773 Help Entry 100927773         CDS       T02286                                  Symbol LIG1 Name (RefSeq) DNA ligase 1 isoform X1   KO K10747   DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7] Organism shr  Sarcophilus harrisii (Tasmanian devil) Pathway shr03030   DNA replication shr03410   Base excision repair shr03420   Nucleotide excision repair shr03430   Mismatch repair Brite KEGG Orthology (KO) [BR:shr00001]  09120 Genetic Information Processing   09124 Replication and repair    03030 DNA replication     100927773 (LIG1)    03410 Base excision repair     100927773 (LIG1)    03420 Nucleotide excision repair     100927773 (LIG1)    03430 Mismatch repair     100927773 (LIG1)  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03032 DNA replication proteins [BR:shr03032]     100927773 (LIG1)    03400 DNA repair and recombination proteins [BR:shr03400]     100927773 (LIG1) Enzymes [BR:shr01000]  6. Ligases   6.5  Forming phosphoric-ester bonds    6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)     6.5.1.1  DNA ligase (ATP)      100927773 (LIG1)     6.5.1.6  DNA ligase (ATP or NAD+)      100927773 (LIG1)     6.5.1.7  DNA ligase (ATP, ADP or GTP)      100927773 (LIG1) DNA replication proteins [BR:shr03032]  Eukaryotic type   DNA Replication Elongation Factors    Other elongation factors     100927773 (LIG1)  Prokaryotic type    Elongation factors (archaeal)     Other elongation factors      100927773 (LIG1) DNA repair and recombination proteins [BR:shr03400]  Eukaryotic type   SSBR (single strand breaks repair)    BER (base exicision repair)     Long Patch-BER factors      100927773 (LIG1)    NER (nucleotide excision repair)     Other NER factors      100927773 (LIG1)    MMR (mismatch excision repair)     Other MMR factors      100927773 (LIG1) BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C RNA_ligase PucR DDR Motif Other DBs NCBI-GeneID:  100927773 NCBI-ProteinID:  XP_031819249 Ensembl:  ENSSHAG00000006383 LinkDB All DBs Position 3:600446392..600454150 Genome browser AA seq 1081 aa AA seqDB search MLRAGWPVAAAGSGRKRSEDLCACASRSGARWGGGGDLTPELWVEPRQLPMPRLPLGPYI PAPLGPWAALEAVTLTVGRPGRPLLPPSSVAAEPVVTCPTLDCKLREGGRPLSALAHSRR QQREAPGAAMQRSIKSFFQPMSGDKVKKQEEPPKSSREREPASKAALKERNGVESESESP VKRVVRRAPRVLGSEGEEDDEEPEEAARAAPREEEPSRPSPASCSRSPSDSSPSSVSPAG IPKRRTARKQVPKRKLQELPEDPEGSEPKRHKGEGGKSAGRSPEQPPPVPEAEGEEQPPR EASEEAAEEAREGEVPARVPEGPTQAPEEPAQAPVQAPKASAGARTKTPKASAKASAKVP KAHTKAPAPAPEAPPETPTKAPSAAPKPFSSFFAPRKPAATKQAPPEAEAGKAAAEALGT PLDPAAYNPSKSGYHPVDDACWKPGQRVPYLAVARTFEKIEEVSARLRMVEMLSNLLRSV VALSPADLLPVLYLSLNQLGPPQQGLELGVGDGVLLKAVAQATGRQLDTIRAEMAERGDV GLVVEASRSTQRTMLPLPHLTAAGVLSKLRDIARLTGSAATSKKIEIIKGLFVACRHSEA RFIARALSGRLRLGLAEQSVLAALAQAVSLTPPGQEFPPAVVDAGKGKAAEARKSWLEEK GLILKQTFCEVPDLDLIIPALLKHGLDQLPQHCQLTPGVPLKPMLAHPTRGIGEVLKRFE ESAFTCEYKYDGQRAQIHVLDNGDVKIFSRNQEDNTGRYPDVISRVPKMKRPSVVSCILD SEAVAWDRAKKQIQPFQVLSTRKRKEVDESDIQVQVCLYAFDLIYLNGQSLVREPLSRRR QLLRENFIETEGEFVFATSLDTEDTEQIADFLEQSVKDSCEGLMVKTLETNATYEIAKRS HNWLKLKKDYLEGVGDTLDLVVIGAYLGRGKRAGRYGGFLLAAFDEDSEEFQAICKLGTG FSDEELEEHYQNLQALVIPAPRSYVRAEGAVPPDHWLEPTTVWEVKCADLSVSPIYSAAR GLVESDKGISLRFPRFVQVRKDKKPEEATSSAQVACLYMKQQQIQNQQDLETSDFDPEEF Y NT seq 3246 nt NT seq  +upstreamnt  +downstreamnt atgctccgggccggctggcctgtggccgccgctggcagcgggaggaagaggagcgaggac ctctgcgcatgcgccagccggagcggcgcgaggtgggggggagggggagatttgacgccc gagctgtgggtggagcctcgtcagcttccaatgccccgtctgcccctcgggccgtatatc cccgcccctctcgggccctgggccgccctagaggccgtgaccctcacagtgggtcggcca ggtcgccccttgctccctccctccagcgtcgctgctgagcctgtagtcacgtgccccacc ttggactgtaagctccgtgagggcgggcgtcccttgtctgccctggcacacagcaggagg cagcagagagaagcccccggagccgccatgcagcgatccatcaagtcgtttttccagcct atgagcggtgacaaagtgaagaagcaggaggagccccccaaaagcagcagggaaagagag ccagcctccaaggctgctctgaaggagaggaatggcgtggagtcggagagcgagtcacca gtgaagcgggtggtgaggagggcgccccgagtcctgggcagcgaaggcgaggaggacgac gaggagcccgaggaggcggctcgggcggccccccgagaagaggagcccagcagaccctcc ccggccagctgcagccgctccccctcagactcgtcccccagcagcgtctctccggcgggg atccccaagcgccgcacagctcggaaacaggtgccgaagcggaagctgcaggagctgcct gaggacccggagggcagtgagcccaagaggcataagggggagggaggtaagagtgcggga aggagcccagagcagccccctccagtccctgaggctgagggggaggagcagcctcccaga gaggcctcggaggaggccgctgaagaggcaagggaaggagaggtgcccgcccgggtaccc gaggggcccacgcaggcgcccgaagagcctgcccaggcccctgtccaggcacccaaggca tccgccggggcacgcaccaagacacccaaggcttccgccaaggcttccgccaaggtgccc aaagctcacaccaaggcacctgcgccagcacctgaggcaccccccgagacccccaccaag gcgcccagcgcagcccccaagcccttcagcagcttttttgccccccgaaaaccagcagca acaaagcaggccccgccagaggctgaggcggggaaggccgcagcagaggcgttgggcacg cccctagacccagctgcctacaacccatctaagagtggctatcaccccgtcgatgatgcc tgctggaagccagggcagagggtcccctacctcgctgtggcacgaacctttgagaaaatc gaggaagtctccgctcggctccggatggtggagatgctgagcaacctcctgcgctctgtg gttgccctgtcccccgccgaccttctccccgtcctctacctgagtctgaaccagctgggc cccccccagcagggcctggagctcggtgtgggggatggcgtcctcctcaaggcggtggct caagccacagggcggcagctagacaccatccgggctgagatggcagaacggggggacgtg gggctggtggtggaggccagccgcagcacccagcgcaccatgctgccactgccccatctg acggccgctggcgtgctgagcaagctccgggacatcgcccgcctcacgggcagtgctgcc acatcaaagaagattgaaatcatcaaaggcttgtttgtggcctgccgccactcggaggcc cgcttcatcgccagggctctgagcgggcggctgcgcctgggactcgccgagcagtcggtg ctggctgcgctcgcccaggccgtgagcctcacgccccccggccaagagttcccccccgcc gtggtggatgctgggaagggcaaggcggcagaagccagaaagtcttggctcgaggagaaa ggactgatcctgaagcagaccttctgcgaggtgcccgacttggacctgatcatccctgcc ctgctcaagcacggcctggaccagctgccccagcactgccagctgaccccaggggtgccc ctgaagcccatgctggcccaccccacccggggcatcggggaggtgctgaagcgcttcgag gagtcggccttcacatgtgaatacaagtatgacgggcagagagcacagatccacgtcctg gacaacggggacgtgaagatatttagccgcaaccaggaggacaacacgggccgatacccg gacgtcatcagccgcgtccccaagatgaagcgtccctccgtcgtctcctgcatcctggac tcggaggccgtggcctgggatcgggcaaagaagcagattcagcccttccaggtgctcagc acccgaaagcgcaaggaagtagacgagtcagacatccaggtccaagtatgtctgtatgcc tttgacctcatctacctcaacgggcagtccctggtgcgggagccgctgtcccggaggcgg cagctgctccgggagaacttcatcgaaacggagggtgagttcgtttttgccacgtctctg gacacggaggatacggagcagatcgccgacttcctggagcagtcagtgaaagattcctgc gagggcctcatggtcaagacccttgaaaccaacgccacctatgagattgccaagaggtcc cacaactggctcaagttgaagaaggactatctggaaggcgttggtgacaccctggacctg gtggtgattggggcctatctgggccggggaaagcgggccgggcgctacgggggcttcctg ctggcggcctttgacgaggacagtgaagaattccaggccatctgcaagctgggcactggc ttcagtgacgaagaattggaggaacattatcaaaacctccaggcgctcgtgattcctgct cctcgttcctatgtccgggctgaaggggccgtaccccctgaccactggctggagccgacc actgtgtgggaggtcaaatgtgctgatctctcagtctccccgatctattcagcagcccga ggattggtggagagcgacaagggcatctccctgcgcttcccccgatttgtccaagttcga aaagacaagaagcccgaagaggcaacttccagtgcccaggtggcctgcctgtacatgaaa cagcaacagatccagaaccagcaggacttggagacctcggactttgatcctgaagagttc tattag

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