Sarcophilus harrisii (Tasmanian devil): 100927976
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Entry
100927976 CDS
T02286
Symbol
THOC2
Name
(RefSeq) THO complex subunit 2 isoform X1
KO
K12879
THO complex subunit 2
Organism
shr
Sarcophilus harrisii (Tasmanian devil)
Pathway
shr03013
Nucleocytoplasmic transport
shr03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
shr00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
100927976 (THOC2)
09122 Translation
03013 Nucleocytoplasmic transport
100927976 (THOC2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
shr03019
]
100927976 (THOC2)
03041 Spliceosome [BR:
shr03041
]
100927976 (THOC2)
Messenger RNA biogenesis [BR:
shr03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
TREX complex
100927976 (THOC2)
Spliceosome [BR:
shr03041
]
Complex C
Other components
EJC/TREX
100927976 (THOC2)
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
100927976 (THOC2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Tho2
THOC2_N
Thoc2
Motif
Other DBs
NCBI-GeneID:
100927976
NCBI-ProteinID:
XP_023362665
Ensembl:
ENSSHAG00000015987
UniProt:
A0A7N4V335
LinkDB
All DBs
Position
X:complement(29100929..29183089)
Genome browser
AA seq
1666 aa
AA seq
DB search
MPCGRCSPLTLFPSLYIRAPAPRERKMAAATTSGPTSVVPNEWIKNWDKVGKLEFVQLCR
ALCENKTREHLIFRDLQQVIYELSYHVIRGNLKHDQASNVLNDIIDYREDMPSILADVFC
ILDIETSCLEEKSKRDHFTQLVISCLYLVSDTILKERLDPETLESLGLIKQSQQFNQKSV
KIKTKLFYKQQKFNLLREENEGYAKLIAELGQDLSGSMTSDLILENIKSLIGCFNLDPNR
VLDVILEVYECRPEYDEFFVPLIESYMCMCEPQTLCHILGFKFKFYQEPNGETPASLYRV
AAILLQYDLIDLDDLYVHLLPVDNTILDEHKQEIVEAKQIVRKLTMVVLSSEKMDERDKE
KEKEEEKTDKPPDNQKLGLLEALLKISDWQHAQNIMDQMPPFYASSHRPIAIALCQLIHV
TVDPLYRRVGVPKGAKGSSIALSQNQRAPKQAESFEDMRKEVFNMLCHLGPHLSHDPILF
AKVVRLGKAFMKEFQVDGNKPEEKERMETLLSCLLTITDQVLLPSLSLMDCNACMSEELW
GMFKSFPYQYRYRLYGQWKNETYNSHPLLVKVKAQTIDRAKYIMKRLTKENVKPSGRQIG
KLSHSNPTILFDYILSQIQKYDNLITPVVDSLKYLTSLNYDVLAYCIIEALANPEKERMK
HDDTTISSWLQSLASFCGAVFRKYPIELAGLLQYVANQLKAGKSFDLLILKEVVQKMAGI
EITEEITMEQLEAMTGGEQLKAEGGYFGQIRNTKKSSQRLKDALLDHDLALPLCLLMAQQ
RNGVIFQEGGEKHLKLVGKLYDQCHDTLVQFGGFLASNLSTEDYIKRVPSIDVLCNEFHT
PHDAAFFLSRPMYAHHISSKYDELKKAEKGSKQQHKVHKYITSCELVMAPVHEAVVSLHL
PKVWDDISPQFYATFWSLTMYDLAVPRNSYEREVNKLKIQMKAVDDNQEMPPNKKKKEKE
RCTALQDKLLEEEKKQIEHVQRVLQRLKLEKDNWLLAKSTKNETITKFLQLCIFPRCIFS
AIDAVYCARFVELVHQQKTLNFSTLLCYDRVFSDIIYTVASCTENEGSRYGRFLCCMLET
VTRWHSDRTIYEKECGNYPGFLTILRATGFDGGNKADQLDYENFRHVVHKWHYKLTKASV
HCLETGEYTHIRNILIVLTKILPWYPKVLNLGQALERRVHKICQEEKEKRPDLYALAMGY
SGQLKSRKPYMIPENEFHHKDPPPRNAVAAAVQNGPGGVGLSTSLTINAAKLEESTTEET
DKVKEKSQGAVKIASKAASTTPKATTSNGNSASNSKVTKESEKEKSGKEKEREKKEKTPA
ATPEAKALGKDGKEKPKEERANKDDKSKEIKEKTPKSDKEKEKFKKDEKSSKDEKFKTVV
INTESKSSVEKDRDKEPSRERDVAKETKSKENVKGGEKIPVAGSLKSPVPRSETSESERE
QKRRKLDSHSSPSHSSTVKIYSQKRSSWFVSRLQPYFQVSRDSENYSSSPVISIHFLQDN
LSELKESSTKHYINHTTPVLSKSKEREMEKKDLDKLRERSREREKKEDKDRKDRKREHSN
NDREAPQDSSTKRRKEENGTTGASKHSKSESPSDSPRSNEKDKNKSKSSGKEKGSDAIKM
DKMEKSSSGSKKDSRHDKEKTEKKEKRDSTGGKEEKKHHKSSDKHR
NT seq
5001 nt
NT seq
+upstream
nt +downstream
nt
atgccttgtgggcggtgctcccctttgaccctctttccctcactatacatccgggctcca
gctcctcgagagaggaagatggcggcggcaacgacgagcggaccgacttcggtggttccc
aacgagtggataaaaaactgggacaaagtgggcaagctcgaatttgtgcagctatgccga
gccctctgtgaaaataaaacccgtgaacatttgatttttagagatctgcagcaagttatc
tatgaactatcatatcatgtcataagaggaaatctaaagcatgatcaagcatcaaatgtt
cttaatgatataattgactatcgtgaggatatgccttccatcctagctgatgtattctgc
atcttagatattgagacaagttgtttagaagaaaaaagcaagagagaccattttacacag
ctggtgatatcctgtttgtatttagtttcagacacaatcttaaaggagcgtttggatcca
gaaacattggaatctttaggacttattaagcagtcccaacaattcaatcaaaaatcagtt
aaaatcaagacaaaacttttttataagcagcaaaaattcaatctcttaagagaagagaac
gaaggttatgcaaaactgattgcagaactgggacaggatttgtctggaagtatgactagt
gacttaatcttagaaaatatcaaatctttaataggatgctttaatctggacccgaacaga
gtcctggatgtcattttagaagtttacgaatgcagaccagaatatgatgagttttttgta
cctttaatagaatcctatatgtgtatgtgtgagcctcaaacgctgtgtcatattctagga
ttcaagttcaagttttatcaggaaccaaatggagagacgccagcatctttatatagagta
gcagcaatacttctgcagtatgatcttattgatttagacgatctttatgttcatcttctt
ccagtggataataccattcttgatgagcacaaacaagaaattgtggaagccaagcaaatt
gttagaaaacttaccatggttgtcttgtcctctgaaaagatggacgagagagacaaagaa
aaggaaaaagaggaggagaaaacagataagccacctgacaaccagaaacttggcttattg
gaagctctgttaaagattagtgattggcaacatgcacaaaacattatggatcagatgccc
ccattctatgcttcttctcacaggccaatagccattgctctttgtcagcttattcatgta
actgttgaccccctttaccgaagagttggagtacctaaaggtgctaaaggatcatctatt
gctctgtcacaaaaccagcgagcgccaaaacaggcagagagttttgaagatatgagaaaa
gaagtattcaatatgctctgtcatcttggccctcacctttctcatgatcccattttgttt
gcaaaagtggtacgcttggggaaagcttttatgaaagagtttcaggttgatggaaacaaa
ccagaagaaaaagagagaatggaaactttgcttagttgcttgctgactattactgaccag
gtgctacttccttctctttctttgatggattgcaatgcttgtatgtctgaagaactatgg
ggaatgtttaagtcgtttccttatcaatataggtatcgtctatatggtcagtggaagaat
gaaacttataacagtcacccgcttttggtaaaagttaaagctcaaacgatagacagagcc
aaatatataatgaaacgattgacaaaggaaaacgtgaagccttctggaagacaaattgga
aaattgagccacagcaatccaaccattttgtttgattacattttatcacaaatacaaaag
tatgataatttaataacaccagtagttgattcattgaaatacctcacttcattgaactat
gacgtgttggcctattgcatcattgaagctttggctaatccagagaaagaaagaatgaaa
catgatgatacaactatctcaagctggcttcaaagcttagctagtttttgtggtgcagtt
tttcgtaaatatccaattgaacttgctggtcttcttcagtacgtggcaaatcaattaaaa
gctggaaaaagctttgacctgcttattttgaaagaggtagtacaaaaaatggcaggaatt
gaaattactgaagaaataacaatggaacaattagaggccatgactggtggggaacaactt
aaagctgagggtggctattttggacagatcagaaacactaaaaaatcctctcagaggtta
aaggatgcattgttggaccatgatcttgcccttcctctatgcttacttatggctcagcag
agaaatggtgtaatctttcaggaaggaggagagaaacacttaaagcttgtgggaaaatta
tatgaccagtgtcatgataccctggtacagtttggtggatttttagcatctaatctaagc
acagaggattatataaagagagtgccttcaattgatgtgctttgcaatgagttccacaca
cctcatgatgcagcatttttcctttctaggcctatgtatgcacaccatatctcatcaaag
tatgatgagcttaaaaaagctgagaagggaagtaagcagcaacataaggttcataaatac
atcacatcgtgtgagttagtgatggctccagtccatgaggcagtggtttctttgcatttg
ccaaaagtgtgggatgacatcagcccccaattctatgccacattttggtcattgacaatg
tatgaccttgcagttccacgaaatagctacgaaagagaagtcaacaaactgaaaatccag
atgaaagcagttgatgataatcaggaaatgcctccaaataaaaagaaaaaggagaaggaa
cggtgtactgcccttcaggacaaacttcttgaagaagagaagaaacagatagaacatgtc
cagagagttctgcagagattaaaattggaaaaagacaactggcttttagcaaaatctaca
aaaaatgagactatcacaaaattcctgcaactctgtatatttcctcgctgcattttttca
gcaattgatgcagtttactgtgctcgttttgtagaattggtacatcagcagaaaacactt
aatttttccacacttttgtgttatgaccgagttttctctgatataatttacacagtggca
agctgtactgaaaatgaaggtagtcgctatggaagatttctctgttgcatgttagaaact
gtgactaggtggcatagtgatagaacaatatatgaaaaggaatgtggtaactatccaggt
ttccttactattttacgggcaactggatttgacggtggaaacaaagctgatcagttagac
tatgaaaattttcgacatgttgtacacaagtggcattataaactaacaaaggcatcagtg
cattgccttgaaacgggtgaatatactcatatcaggaacattctcattgtactgaccaaa
atacttccatggtatcctaaagttttgaacctgggccaggctttggaacgaagggtccat
aaaatctgtcaagaagagaaagagaagagacctgacctatatgcattggctatgggctat
tctgggcagttgaaaagtagaaagccatacatgatacctgaaaatgaattccaccacaaa
gatcctcccccaaggaatgctgttgctgccgctgtacaaaatgggcccggtggtgttggc
ctgtctacatcactcacaataaatgcagctaaattggaagaaagcactactgaggagact
gataaagtaaaagagaagtctcagggtgctgtgaaaattgctagtaaagctgccagtaca
acacctaaagcgactacaagtaatggaaacagtgcttctaatagcaaagttactaaagaa
agtgaaaaagagaaaagtgggaaagaaaaagaaagagaaaaaaaagaaaagactccagct
gccactccagaggccaaggcacttggtaaagatggtaaagaaaaaccaaaggaagaacgg
gcaaataaagatgacaaatctaaagagatcaaggaaaaaacacccaagtctgacaaggag
aaggaaaaattcaagaaggatgaaaaatcttctaaagatgaaaaattcaagacagttgtt
atcaacactgaatcaaagtcaagtgtagaaaaggatagagacaaggaaccatccagagag
agagatgtagcgaaggaaacgaaatccaaggaaaatgttaaaggaggagaaaagatacca
gttgctgggtccttgaagtcacctgttccccgatcagaaacatcagagtctgaacgggaa
caaaaacgccgcaaacttgatagccactcttctccatcacattcctcaacagtaaagatt
tattcccagaaaaggagtagctggtttgtttcaaggttacaaccatacttccaagtttct
cgggattctgagaactattccagctcacctgtcatctccattcattttctacaggacaac
ctcagcgagctcaaggagtcttccacaaagcactacattaatcacactactccagtacta
tccaagagtaaggagagagaaatggaaaagaaagatttggacaagttaagggaaagatcc
agagagagagagaagaaagaggacaaggacaggaaagatcgaaaaagggagcattcaaac
aatgaccgtgaagcaccccaggactcctccaccaagaggcgtaaagaggaaaatggaaca
actggtgcttcaaaacatagtaaaagtgaaagtccatcagattctcctcgttcaaatgag
aaggacaaaaacaaatctaaatcttcaggcaaagaaaaaggcagcgatgccattaaaatg
gacaaaatggagaaaagctcttctggtagtaaaaaggactctcgacatgataaggaaaaa
acagagaaaaaagagaaacgggacagtacaggaggaaaggaggaaaagaagcatcataag
tcttcagacaagcacagataa
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integrated database retrieval system
